HEADER DNA BINDING PROTEIN 05-JUL-13 4LJL TITLE STRUCTURAL INSIGHTS INTO THE UNIQUE SINGLE-STRANDED DNA BINDING MODE TITLE 2 OF DNA PROCESSING PROTEIN A FROM HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PROCESSING CHAIN A (DPRA); COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 5-225; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26695; SOURCE 5 GENE: HP0333, HP_0333; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS DNA PROCESSING A DOMAIN, ROSSMANN FOLD, SSDNA BINDING, COMPLEX, KEYWDS 2 NATURAL RECOMBINATION MEDIATING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG REVDAT 4 12-NOV-14 4LJL 1 KEYWDS REVDAT 3 02-APR-14 4LJL 1 JRNL REVDAT 2 29-JAN-14 4LJL 1 JRNL REVDAT 1 01-JAN-14 4LJL 0 JRNL AUTH W.WANG,J.DING,Y.ZHANG,Y.HU,D.C.WANG JRNL TITL STRUCTURAL INSIGHTS INTO THE UNIQUE SINGLE-STRANDED JRNL TITL 2 DNA-BINDING MODE OF HELICOBACTER PYLORI DPRA. JRNL REF NUCLEIC ACIDS RES. V. 42 3478 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24369431 JRNL DOI 10.1093/NAR/GKT1334 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 34008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7668 - 5.0336 0.99 3066 171 0.1636 0.1704 REMARK 3 2 5.0336 - 3.9966 1.00 2937 143 0.1291 0.1740 REMARK 3 3 3.9966 - 3.4917 1.00 2879 162 0.1590 0.1908 REMARK 3 4 3.4917 - 3.1726 1.00 2834 163 0.1842 0.2349 REMARK 3 5 3.1726 - 2.9453 0.99 2868 134 0.1898 0.2260 REMARK 3 6 2.9453 - 2.7717 0.98 2798 142 0.1913 0.2645 REMARK 3 7 2.7717 - 2.6329 0.97 2752 129 0.1851 0.2590 REMARK 3 8 2.6329 - 2.5183 0.96 2724 133 0.1841 0.2541 REMARK 3 9 2.5183 - 2.4214 0.93 2636 144 0.1772 0.2347 REMARK 3 10 2.4214 - 2.3378 0.91 2542 136 0.1947 0.2702 REMARK 3 11 2.3378 - 2.2647 0.81 2333 123 0.1960 0.2395 REMARK 3 12 2.2647 - 2.2000 0.71 1949 110 0.1878 0.2574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 47.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.08330 REMARK 3 B22 (A**2) : 18.50930 REMARK 3 B33 (A**2) : -5.42600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3504 REMARK 3 ANGLE : 0.976 4742 REMARK 3 CHIRALITY : 0.066 553 REMARK 3 PLANARITY : 0.005 607 REMARK 3 DIHEDRAL : 13.643 1350 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'B' and (resseq 5:41) REMARK 3 ORIGIN FOR THE GROUP (A): -75.8261 37.0003 -8.7904 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.3263 REMARK 3 T33: 0.1485 T12: 0.1053 REMARK 3 T13: 0.0442 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 0.0063 L22: 0.0438 REMARK 3 L33: 0.1079 L12: -0.0011 REMARK 3 L13: 0.0060 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.2179 S13: -0.1044 REMARK 3 S21: 0.0762 S22: 0.0066 S23: 0.0470 REMARK 3 S31: 0.0253 S32: 0.0903 S33: -0.0117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'B' and (resseq 42:71) REMARK 3 ORIGIN FOR THE GROUP (A): -59.9335 25.2869 -20.7296 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.3207 REMARK 3 T33: 0.2831 T12: 0.2273 REMARK 3 T13: 0.0092 T23: -0.0390 REMARK 3 L TENSOR REMARK 3 L11: 0.0755 L22: 0.0225 REMARK 3 L33: 0.0839 L12: -0.0229 REMARK 3 L13: -0.0553 L23: 0.0366 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.1167 S13: -0.1253 REMARK 3 S21: -0.0313 S22: 0.0112 S23: 0.1004 REMARK 3 S31: -0.0045 S32: 0.1043 S33: 0.0313 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'B' and (resseq 72:136) REMARK 3 ORIGIN FOR THE GROUP (A): -70.9676 35.8755 -19.7679 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.2022 REMARK 3 T33: 0.1606 T12: 0.0729 REMARK 3 T13: 0.0003 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.2211 L22: 0.0412 REMARK 3 L33: 0.1333 L12: -0.0600 REMARK 3 L13: -0.0500 L23: -0.0098 REMARK 3 S TENSOR REMARK 3 S11: 0.0380 S12: 0.1242 S13: -0.1368 REMARK 3 S21: -0.0642 S22: -0.1013 S23: 0.0692 REMARK 3 S31: -0.0213 S32: 0.1652 S33: -0.0145 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'B' and (resseq 137:182) REMARK 3 ORIGIN FOR THE GROUP (A): -57.2465 35.0564 -10.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.1258 T22: 0.3481 REMARK 3 T33: 0.1481 T12: 0.1636 REMARK 3 T13: 0.0247 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.0483 L22: 0.0566 REMARK 3 L33: 0.0357 L12: -0.0258 REMARK 3 L13: 0.0100 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: -0.0935 S13: -0.0164 REMARK 3 S21: -0.0036 S22: -0.0534 S23: -0.0497 REMARK 3 S31: 0.0148 S32: 0.1575 S33: -0.0135 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'B' and (resseq 183:206) REMARK 3 ORIGIN FOR THE GROUP (A): -45.4148 28.1802 -16.1584 REMARK 3 T TENSOR REMARK 3 T11: 0.1667 T22: 0.4559 REMARK 3 T33: 0.3075 T12: 0.2512 REMARK 3 T13: -0.0348 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 0.0215 L22: 0.0166 REMARK 3 L33: 0.0164 L12: -0.0029 REMARK 3 L13: -0.0078 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0043 S12: 0.0087 S13: 0.0143 REMARK 3 S21: -0.0173 S22: 0.0228 S23: 0.0172 REMARK 3 S31: -0.0002 S32: 0.0266 S33: 0.0090 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'B' and (resseq 207:223) REMARK 3 ORIGIN FOR THE GROUP (A): -60.5232 13.6089 -10.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.5622 T22: 0.3640 REMARK 3 T33: 0.6737 T12: 0.1791 REMARK 3 T13: 0.0106 T23: 0.1912 REMARK 3 L TENSOR REMARK 3 L11: 0.0012 L22: 0.0134 REMARK 3 L33: 0.0060 L12: -0.0048 REMARK 3 L13: 0.0032 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.0017 S13: -0.0394 REMARK 3 S21: 0.0156 S22: 0.0066 S23: 0.0041 REMARK 3 S31: 0.0291 S32: 0.0119 S33: 0.0041 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resseq 5:41) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6331 10.9444 -20.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.2342 REMARK 3 T33: 0.1663 T12: 0.0261 REMARK 3 T13: 0.0068 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.0793 L22: 0.2211 REMARK 3 L33: 0.0893 L12: -0.0239 REMARK 3 L13: 0.0239 L23: -0.0685 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.0642 S13: -0.0380 REMARK 3 S21: 0.0401 S22: 0.0106 S23: -0.0526 REMARK 3 S31: -0.0558 S32: -0.0517 S33: -0.0074 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resseq 42:71) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2296 24.3756 -24.8704 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.3258 REMARK 3 T33: 0.1703 T12: 0.1819 REMARK 3 T13: 0.0012 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.0933 L22: 0.0379 REMARK 3 L33: 0.0766 L12: 0.0039 REMARK 3 L13: 0.0599 L23: -0.0198 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.1310 S13: 0.0539 REMARK 3 S21: -0.0322 S22: 0.0102 S23: 0.0205 REMARK 3 S31: -0.0530 S32: -0.1384 S33: 0.0427 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resseq 72:138) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5246 14.1623 -28.9734 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.2162 REMARK 3 T33: 0.1324 T12: 0.0714 REMARK 3 T13: -0.0058 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0418 L22: 0.1227 REMARK 3 L33: 0.0305 L12: -0.0570 REMARK 3 L13: -0.0149 L23: 0.0539 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: 0.1213 S13: 0.0339 REMARK 3 S21: -0.1601 S22: -0.0237 S23: -0.0145 REMARK 3 S31: -0.1007 S32: -0.1699 S33: 0.0109 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'A' and (resseq 139:182) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5792 13.0397 -16.7029 REMARK 3 T TENSOR REMARK 3 T11: 0.1830 T22: 0.2775 REMARK 3 T33: 0.1322 T12: 0.0943 REMARK 3 T13: -0.0119 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.0646 L22: 0.1665 REMARK 3 L33: 0.0651 L12: -0.0264 REMARK 3 L13: -0.0598 L23: 0.0592 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.0287 S13: -0.0049 REMARK 3 S21: -0.0798 S22: -0.0795 S23: 0.0339 REMARK 3 S31: -0.0990 S32: -0.2027 S33: -0.0069 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'A' and (resseq 183:206) REMARK 3 ORIGIN FOR THE GROUP (A): -40.1991 20.0001 -17.7049 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.4654 REMARK 3 T33: 0.2073 T12: 0.3462 REMARK 3 T13: 0.0044 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.0041 L22: 0.0059 REMARK 3 L33: 0.0046 L12: -0.0026 REMARK 3 L13: -0.0046 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.0172 S13: -0.0278 REMARK 3 S21: -0.0110 S22: -0.0004 S23: 0.0387 REMARK 3 S31: 0.0044 S32: -0.0143 S33: -0.0052 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: chain 'A' and (resseq 207:223) REMARK 3 ORIGIN FOR THE GROUP (A): -24.1721 33.4126 -12.7962 REMARK 3 T TENSOR REMARK 3 T11: 0.5018 T22: 0.3041 REMARK 3 T33: 0.2855 T12: 0.1848 REMARK 3 T13: -0.0267 T23: -0.1130 REMARK 3 L TENSOR REMARK 3 L11: 0.0137 L22: 0.0198 REMARK 3 L33: 0.0079 L12: 0.0032 REMARK 3 L13: -0.0040 L23: 0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: -0.0065 S13: 0.0220 REMARK 3 S21: 0.0142 S22: -0.0009 S23: -0.0093 REMARK 3 S31: -0.0425 S32: -0.0097 S33: -0.0030 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE RCSB ID CODE IS RCSB080710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 4LJK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 100 MM BIS-TRIS, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 85.54500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.54500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 224 REMARK 465 GLU B 225 REMARK 465 LEU B 226 REMARK 465 GLU B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 PRO A 224 REMARK 465 GLU A 225 REMARK 465 LEU A 226 REMARK 465 GLU A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 223 O HOH A 482 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 187 -10.01 74.12 REMARK 500 SER B 189 73.92 -159.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 473 DISTANCE = 5.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LJK RELATED DB: PDB REMARK 900 RELATED ID: 4LJR RELATED DB: PDB DBREF 4LJL B 5 225 UNP O25100 O25100_HELPY 5 225 DBREF 4LJL A 5 225 UNP O25100 O25100_HELPY 5 225 SEQADV 4LJL LEU B 226 UNP O25100 EXPRESSION TAG SEQADV 4LJL GLU B 227 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS B 228 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS B 229 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS B 230 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS B 231 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS B 232 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS B 233 UNP O25100 EXPRESSION TAG SEQADV 4LJL LEU A 226 UNP O25100 EXPRESSION TAG SEQADV 4LJL GLU A 227 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS A 228 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS A 229 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS A 230 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS A 231 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS A 232 UNP O25100 EXPRESSION TAG SEQADV 4LJL HIS A 233 UNP O25100 EXPRESSION TAG SEQRES 1 B 229 MET LYS SER HIS PHE GLN TYR SER THR LEU GLU ASN ILE SEQRES 2 B 229 PRO LYS ALA PHE ASP ILE LEU LYS ASP PRO PRO LYS LYS SEQRES 3 B 229 LEU TYR CYS VAL GLY ASP THR LYS LEU LEU ASP THR PRO SEQRES 4 B 229 LEU LYS VAL ALA ILE ILE GLY THR ARG ARG PRO THR PRO SEQRES 5 B 229 TYR SER LYS GLN HIS THR ILE THR LEU ALA ARG GLU LEU SEQRES 6 B 229 ALA LYS ASN GLY ALA VAL ILE VAL SER GLY GLY ALA LEU SEQRES 7 B 229 GLY VAL ASP ILE ILE ALA GLN GLU ASN ALA LEU PRO LYS SEQRES 8 B 229 THR ILE MET LEU SER PRO CYS SER LEU ASP PHE ILE TYR SEQRES 9 B 229 PRO THR ASN ASN HIS LYS VAL ILE GLN GLU ILE ALA GLN SEQRES 10 B 229 ASN GLY LEU ILE LEU SER GLU TYR GLU LYS ASP PHE MET SEQRES 11 B 229 PRO ILE LYS GLY SER PHE LEU ALA ARG ASN ARG LEU VAL SEQRES 12 B 229 ILE ALA LEU SER ASP VAL VAL ILE ILE PRO GLN ALA ASP SEQRES 13 B 229 LEU LYS SER GLY SER MET SER SER ALA ARG LEU ALA GLN SEQRES 14 B 229 LYS TYR GLN LYS PRO LEU PHE VAL LEU PRO GLN ARG LEU SEQRES 15 B 229 ASN GLU SER ASP GLY THR ASN GLU LEU LEU GLU LYS GLY SEQRES 16 B 229 GLN ALA GLN GLY ILE PHE ASN ILE GLN ASN PHE ILE ASN SEQRES 17 B 229 THR LEU LEU LYS ASP TYR HIS LEU LYS GLU MET PRO GLU SEQRES 18 B 229 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 229 MET LYS SER HIS PHE GLN TYR SER THR LEU GLU ASN ILE SEQRES 2 A 229 PRO LYS ALA PHE ASP ILE LEU LYS ASP PRO PRO LYS LYS SEQRES 3 A 229 LEU TYR CYS VAL GLY ASP THR LYS LEU LEU ASP THR PRO SEQRES 4 A 229 LEU LYS VAL ALA ILE ILE GLY THR ARG ARG PRO THR PRO SEQRES 5 A 229 TYR SER LYS GLN HIS THR ILE THR LEU ALA ARG GLU LEU SEQRES 6 A 229 ALA LYS ASN GLY ALA VAL ILE VAL SER GLY GLY ALA LEU SEQRES 7 A 229 GLY VAL ASP ILE ILE ALA GLN GLU ASN ALA LEU PRO LYS SEQRES 8 A 229 THR ILE MET LEU SER PRO CYS SER LEU ASP PHE ILE TYR SEQRES 9 A 229 PRO THR ASN ASN HIS LYS VAL ILE GLN GLU ILE ALA GLN SEQRES 10 A 229 ASN GLY LEU ILE LEU SER GLU TYR GLU LYS ASP PHE MET SEQRES 11 A 229 PRO ILE LYS GLY SER PHE LEU ALA ARG ASN ARG LEU VAL SEQRES 12 A 229 ILE ALA LEU SER ASP VAL VAL ILE ILE PRO GLN ALA ASP SEQRES 13 A 229 LEU LYS SER GLY SER MET SER SER ALA ARG LEU ALA GLN SEQRES 14 A 229 LYS TYR GLN LYS PRO LEU PHE VAL LEU PRO GLN ARG LEU SEQRES 15 A 229 ASN GLU SER ASP GLY THR ASN GLU LEU LEU GLU LYS GLY SEQRES 16 A 229 GLN ALA GLN GLY ILE PHE ASN ILE GLN ASN PHE ILE ASN SEQRES 17 A 229 THR LEU LEU LYS ASP TYR HIS LEU LYS GLU MET PRO GLU SEQRES 18 A 229 LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *321(H2 O) HELIX 1 1 PRO B 18 LEU B 24 5 7 HELIX 2 2 THR B 37 THR B 42 5 6 HELIX 3 3 THR B 55 ASN B 72 1 18 HELIX 4 4 GLY B 83 LEU B 93 1 11 HELIX 5 5 PRO B 109 ASN B 111 5 3 HELIX 6 6 ASN B 112 GLY B 123 1 12 HELIX 7 7 ILE B 136 SER B 151 1 16 HELIX 8 8 SER B 163 TYR B 175 1 13 HELIX 9 9 SER B 189 LYS B 198 1 10 HELIX 10 10 ASN B 206 TYR B 218 1 13 HELIX 11 11 PRO A 18 LEU A 24 5 7 HELIX 12 12 THR A 37 THR A 42 5 6 HELIX 13 13 THR A 55 ASN A 72 1 18 HELIX 14 14 GLY A 83 LEU A 93 1 11 HELIX 15 15 PRO A 109 ASN A 111 5 3 HELIX 16 16 ASN A 112 GLY A 123 1 12 HELIX 17 17 GLY A 138 SER A 151 1 14 HELIX 18 18 SER A 163 TYR A 175 1 13 HELIX 19 19 SER A 189 LYS A 198 1 10 HELIX 20 20 ASN A 206 TYR A 218 1 13 SHEET 1 A 9 SER B 12 THR B 13 0 SHEET 2 A 9 TYR B 32 GLY B 35 -1 O CYS B 33 N SER B 12 SHEET 3 A 9 LEU B 124 SER B 127 -1 O SER B 127 N TYR B 32 SHEET 4 A 9 THR B 96 LEU B 99 1 N MET B 98 O LEU B 124 SHEET 5 A 9 ALA B 74 SER B 78 1 N SER B 78 O LEU B 99 SHEET 6 A 9 LEU B 44 ILE B 48 1 N VAL B 46 O VAL B 75 SHEET 7 A 9 VAL B 153 ILE B 156 1 O ILE B 155 N ALA B 47 SHEET 8 A 9 LEU B 179 VAL B 181 1 O PHE B 180 N ILE B 156 SHEET 9 A 9 GLN B 202 GLY B 203 1 O GLN B 202 N LEU B 179 SHEET 1 B 9 SER A 12 LEU A 14 0 SHEET 2 B 9 LEU A 31 GLY A 35 -1 O CYS A 33 N SER A 12 SHEET 3 B 9 LEU A 124 SER A 127 -1 O SER A 127 N TYR A 32 SHEET 4 B 9 THR A 96 LEU A 99 1 N MET A 98 O LEU A 124 SHEET 5 B 9 VAL A 75 SER A 78 1 N SER A 78 O LEU A 99 SHEET 6 B 9 LYS A 45 ILE A 48 1 N VAL A 46 O VAL A 77 SHEET 7 B 9 VAL A 153 ILE A 156 1 O ILE A 155 N ALA A 47 SHEET 8 B 9 LEU A 179 VAL A 181 1 O PHE A 180 N ILE A 156 SHEET 9 B 9 GLN A 202 GLY A 203 1 O GLN A 202 N LEU A 179 CISPEP 1 LEU B 93 PRO B 94 0 2.87 CISPEP 2 TYR B 108 PRO B 109 0 -1.47 CISPEP 3 LEU A 93 PRO A 94 0 5.23 CISPEP 4 TYR A 108 PRO A 109 0 2.84 CRYST1 171.090 107.860 37.470 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026688 0.00000 MASTER 457 0 0 20 18 0 0 6 0 0 0 36 END