HEADER CHAPERONE 04-JUL-13 4LJ9 TITLE CLPB NBD2 R621Q FROM T. THERMOPHILUS IN COMPLEX WITH AMPPCP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN CLPB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEOTIDE BINDING DOMAIN 2, UNP RESIDUES 520-854; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: CLPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AAA+ PROTEIN, NUCLEOTIDE BINDING DOMAIN, MOLECULAR CHAPERONE, KEYWDS 2 DISAGGREGASE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR C.ZEYMER,T.R.M.BARENDS,N.D.WERBECK,I.SCHLICHTING,J.REINSTEIN REVDAT 3 15-NOV-17 4LJ9 1 REMARK REVDAT 2 09-APR-14 4LJ9 1 JRNL REVDAT 1 12-FEB-14 4LJ9 0 JRNL AUTH C.ZEYMER,T.R.M.BARENDS,N.D.WERBECK,I.SCHLICHTING,J.REINSTEIN JRNL TITL ELEMENTS IN NUCLEOTIDE SENSING AND HYDROLYSIS OF THE AAA+ JRNL TITL 2 DISAGGREGATION MACHINE CLPB: A STRUCTURE-BASED MECHANISTIC JRNL TITL 3 DISSECTION OF A MOLECULAR MOTOR JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 582 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24531492 JRNL DOI 10.1107/S1399004713030629 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2068 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.540 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2795 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3804 ; 1.242 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 351 ; 4.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;33.149 ;23.185 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;14.030 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;15.574 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2114 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1687 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2746 ; 1.069 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 1.914 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1050 ; 3.341 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 710 REMARK 3 RESIDUE RANGE : A 741 A 755 REMARK 3 ORIGIN FOR THE GROUP (A): 9.2093 28.7328 -11.6525 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0428 REMARK 3 T33: 0.0409 T12: 0.0365 REMARK 3 T13: -0.0012 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.6344 L22: 0.4982 REMARK 3 L33: 1.0272 L12: 0.1504 REMARK 3 L13: 0.0037 L23: -0.1245 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.0881 S13: -0.0607 REMARK 3 S21: -0.0953 S22: -0.0783 S23: -0.0983 REMARK 3 S31: 0.0334 S32: 0.0595 S33: 0.0420 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 756 A 849 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2522 40.4934 -10.7435 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0569 REMARK 3 T33: 0.1285 T12: 0.0288 REMARK 3 T13: -0.0457 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 2.5456 L22: 1.3526 REMARK 3 L33: 1.7147 L12: -0.2399 REMARK 3 L13: 1.4031 L23: -0.4665 REMARK 3 S TENSOR REMARK 3 S11: -0.1895 S12: -0.1539 S13: 0.2959 REMARK 3 S21: 0.0179 S22: 0.0398 S23: 0.2310 REMARK 3 S31: -0.2308 S32: -0.0890 S33: 0.1497 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 711 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): -5.4659 18.3944 12.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.0776 REMARK 3 T33: 0.0478 T12: -0.0542 REMARK 3 T13: -0.0079 T23: 0.0561 REMARK 3 L TENSOR REMARK 3 L11: 10.3154 L22: 2.4504 REMARK 3 L33: 5.4660 L12: -2.3197 REMARK 3 L13: -4.5157 L23: 1.7537 REMARK 3 S TENSOR REMARK 3 S11: -0.1367 S12: -0.6795 S13: -0.6453 REMARK 3 S21: 0.6389 S22: -0.0460 S23: 0.0858 REMARK 3 S31: 0.2646 S32: 0.0756 S33: 0.1826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LJ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41388 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LJ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS/HCL, 15% ISOPROPANOL, 75MM REMARK 280 MAGNESIUM CHLORIDE, 2MM AMPPCP, PH 7.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.78667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.89333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.84000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.94667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.73333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE FULL PROTEIN FORMS A RANGE OF OLIGOMERS, AND THIS REMARK 300 DOMAIN FORMS DIMERS IN SOLUTION UNDER CERTAIN CIRCUMSTANCES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 516 REMARK 465 SER A 517 REMARK 465 ALA A 850 REMARK 465 ARG A 851 REMARK 465 VAL A 852 REMARK 465 GLU A 853 REMARK 465 ALA A 854 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 849 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 614 -5.08 75.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 602 OG1 REMARK 620 2 ACP A 901 O1G 174.3 REMARK 620 3 ACP A 901 O1B 82.3 95.9 REMARK 620 4 HOH A1158 O 88.5 93.5 170.6 REMARK 620 5 HOH A1160 O 93.2 92.2 89.0 89.8 REMARK 620 6 HOH A1159 O 84.3 90.2 87.1 93.6 175.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 903 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1165 O REMARK 620 2 HOH A1163 O 88.1 REMARK 620 3 HOH A1161 O 95.6 93.0 REMARK 620 4 HOH A1162 O 98.8 169.5 94.1 REMARK 620 5 HOH A1187 O 78.1 92.7 171.3 81.1 REMARK 620 6 HOH A1164 O 174.3 88.8 89.4 83.6 97.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 903 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LJ4 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ5 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ6 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ7 RELATED DB: PDB REMARK 900 RELATED ID: 4LJ8 RELATED DB: PDB REMARK 900 RELATED ID: 4LJA RELATED DB: PDB DBREF 4LJ9 A 520 854 UNP Q9RA63 CLPB_THET8 520 854 SEQADV 4LJ9 GLY A 516 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ9 SER A 517 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ9 HIS A 518 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ9 MET A 519 UNP Q9RA63 EXPRESSION TAG SEQADV 4LJ9 GLN A 621 UNP Q9RA63 ARG 621 ENGINEERED MUTATION SEQRES 1 A 339 GLY SER HIS MET GLU VAL THR GLU GLU ASP ILE ALA GLU SEQRES 2 A 339 ILE VAL SER ARG TRP THR GLY ILE PRO VAL SER LYS LEU SEQRES 3 A 339 LEU GLU GLY GLU ARG GLU LYS LEU LEU ARG LEU GLU GLU SEQRES 4 A 339 GLU LEU HIS LYS ARG VAL VAL GLY GLN ASP GLU ALA ILE SEQRES 5 A 339 ARG ALA VAL ALA ASP ALA ILE ARG ARG ALA ARG ALA GLY SEQRES 6 A 339 LEU LYS ASP PRO ASN ARG PRO ILE GLY SER PHE LEU PHE SEQRES 7 A 339 LEU GLY PRO THR GLY VAL GLY LYS THR GLU LEU ALA LYS SEQRES 8 A 339 THR LEU ALA ALA THR LEU PHE ASP THR GLU GLU ALA MET SEQRES 9 A 339 ILE GLN ILE ASP MET THR GLU TYR MET GLU LYS HIS ALA SEQRES 10 A 339 VAL SER ARG LEU ILE GLY ALA PRO PRO GLY TYR VAL GLY SEQRES 11 A 339 TYR GLU GLU GLY GLY GLN LEU THR GLU ALA VAL ARG ARG SEQRES 12 A 339 ARG PRO TYR SER VAL ILE LEU PHE ASP GLU ILE GLU LYS SEQRES 13 A 339 ALA HIS PRO ASP VAL PHE ASN ILE LEU LEU GLN ILE LEU SEQRES 14 A 339 ASP ASP GLY ARG LEU THR ASP SER HIS GLY ARG THR VAL SEQRES 15 A 339 ASP PHE ARG ASN THR VAL ILE ILE LEU THR SER ASN LEU SEQRES 16 A 339 GLY SER PRO LEU ILE LEU GLU GLY LEU GLN LYS GLY TRP SEQRES 17 A 339 PRO TYR GLU ARG ILE ARG ASP GLU VAL PHE LYS VAL LEU SEQRES 18 A 339 GLN GLN HIS PHE ARG PRO GLU PHE LEU ASN ARG LEU ASP SEQRES 19 A 339 GLU ILE VAL VAL PHE ARG PRO LEU THR LYS GLU GLN ILE SEQRES 20 A 339 ARG GLN ILE VAL GLU ILE GLN LEU SER TYR LEU ARG ALA SEQRES 21 A 339 ARG LEU ALA GLU LYS ARG ILE SER LEU GLU LEU THR GLU SEQRES 22 A 339 ALA ALA LYS ASP PHE LEU ALA GLU ARG GLY TYR ASP PRO SEQRES 23 A 339 VAL PHE GLY ALA ARG PRO LEU ARG ARG VAL ILE GLN ARG SEQRES 24 A 339 GLU LEU GLU THR PRO LEU ALA GLN LYS ILE LEU ALA GLY SEQRES 25 A 339 GLU VAL LYS GLU GLY ASP ARG VAL GLN VAL ASP VAL GLY SEQRES 26 A 339 PRO ALA GLY LEU VAL PHE ALA VAL PRO ALA ARG VAL GLU SEQRES 27 A 339 ALA HET ACP A 901 31 HET MG A 902 1 HET MG A 903 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *216(H2 O) HELIX 1 1 THR A 522 GLY A 535 1 14 HELIX 2 2 PRO A 537 LEU A 542 1 6 HELIX 3 3 LEU A 542 LEU A 550 1 9 HELIX 4 4 ARG A 551 LYS A 558 1 8 HELIX 5 5 GLN A 563 ALA A 579 1 17 HELIX 6 6 GLY A 600 ASP A 614 1 15 HELIX 7 7 THR A 615 GLU A 617 5 3 HELIX 8 8 THR A 625 TYR A 627 5 3 HELIX 9 9 HIS A 631 GLY A 638 1 8 HELIX 10 10 GLY A 650 ARG A 659 1 10 HELIX 11 11 GLU A 668 ALA A 672 5 5 HELIX 12 12 HIS A 673 GLY A 687 1 15 HELIX 13 13 GLY A 711 GLY A 722 1 12 HELIX 14 14 PRO A 724 PHE A 740 1 17 HELIX 15 15 ARG A 741 ASN A 746 1 6 HELIX 16 16 THR A 758 LEU A 770 1 13 HELIX 17 17 LEU A 770 LYS A 780 1 11 HELIX 18 18 THR A 787 TYR A 799 1 13 HELIX 19 19 PRO A 807 LEU A 816 1 10 HELIX 20 20 LEU A 816 ALA A 826 1 11 SHEET 1 A 5 MET A 619 ASP A 623 0 SHEET 2 A 5 VAL A 663 ASP A 667 1 O LEU A 665 N ILE A 620 SHEET 3 A 5 VAL A 703 THR A 707 1 O ILE A 705 N ILE A 664 SHEET 4 A 5 GLY A 589 LEU A 594 1 N PHE A 593 O LEU A 706 SHEET 5 A 5 GLU A 750 VAL A 753 1 O VAL A 752 N LEU A 592 SHEET 1 B 2 ARG A 688 THR A 690 0 SHEET 2 B 2 THR A 696 ASP A 698 -1 O VAL A 697 N LEU A 689 SHEET 1 C 3 SER A 783 LEU A 786 0 SHEET 2 C 3 ARG A 834 VAL A 839 1 O VAL A 837 N GLU A 785 SHEET 3 C 3 LEU A 844 ALA A 847 -1 O ALA A 847 N GLN A 836 LINK OG1 THR A 602 MG MG A 902 1555 1555 1.98 LINK MG MG A 903 O HOH A1165 1555 1555 1.99 LINK O1G ACP A 901 MG MG A 902 1555 1555 2.03 LINK MG MG A 903 O HOH A1163 1555 1555 2.03 LINK O1B ACP A 901 MG MG A 902 1555 1555 2.04 LINK MG MG A 903 O HOH A1161 1555 1555 2.05 LINK MG MG A 902 O HOH A1158 1555 1555 2.09 LINK MG MG A 902 O HOH A1160 1555 1555 2.13 LINK MG MG A 902 O HOH A1159 1555 1555 2.14 LINK MG MG A 903 O HOH A1162 1555 1555 2.20 LINK MG MG A 903 O HOH A1187 1555 1555 2.20 LINK MG MG A 903 O HOH A1164 1555 1555 2.30 SITE 1 AC1 26 ARG A 559 VAL A 560 VAL A 561 THR A 597 SITE 2 AC1 26 GLY A 598 VAL A 599 GLY A 600 LYS A 601 SITE 3 AC1 26 THR A 602 GLU A 603 ILE A 765 GLN A 769 SITE 4 AC1 26 ALA A 805 MG A 902 HOH A1004 HOH A1007 SITE 5 AC1 26 HOH A1045 HOH A1048 HOH A1062 HOH A1154 SITE 6 AC1 26 HOH A1158 HOH A1159 HOH A1160 HOH A1161 SITE 7 AC1 26 HOH A1162 HOH A1177 SITE 1 AC2 5 THR A 602 ACP A 901 HOH A1158 HOH A1159 SITE 2 AC2 5 HOH A1160 SITE 1 AC3 6 HOH A1161 HOH A1162 HOH A1163 HOH A1164 SITE 2 AC3 6 HOH A1165 HOH A1187 CRYST1 74.640 74.640 119.680 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013398 0.007735 0.000000 0.00000 SCALE2 0.000000 0.015470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008356 0.00000 MASTER 387 0 3 20 10 0 11 6 0 0 0 27 END