HEADER TRANSPORT PROTEIN 03-JUL-13 4LIW TITLE CCMK1 CARBOXYSOME SHELL PROTEIN FROM SYNECHOCYSTIS PCC6803, L11K POINT TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON DIOXIDE-CONCENTRATING MECHANISM PROTEIN CCMK HOMOLOG COMPND 3 1; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803 SUBSTR. KAZUSA; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC6803; SOURCE 5 GENE: CCMK1, SLL1029; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS BACTERIAL MICROCOMPARTMENT, CARBOXYSOME, BMC SHELL PROTEIN, TRANSPORT KEYWDS 2 PROTEIN, TWINNING, TRANSLATIONAL NCS EXPDTA X-RAY DIFFRACTION AUTHOR M.C.THOMPSON,T.O.YEATES REVDAT 3 04-APR-18 4LIW 1 SOURCE REMARK REVDAT 2 12-FEB-14 4LIW 1 JRNL REVDAT 1 08-JAN-14 4LIW 0 JRNL AUTH M.C.THOMPSON,T.O.YEATES JRNL TITL A CHALLENGING INTERPRETATION OF A HEXAGONALLY LAYERED JRNL TITL 2 PROTEIN STRUCTURE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 203 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24419393 JRNL DOI 10.1107/S139900471302422X REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1334 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 20387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2529 - 3.0627 0.95 2873 151 0.1505 0.1801 REMARK 3 2 3.0627 - 2.4311 0.95 2805 154 0.1777 0.1898 REMARK 3 3 2.4311 - 2.1238 0.95 2804 150 0.2011 0.2234 REMARK 3 4 2.1238 - 1.9296 0.94 2803 151 0.2128 0.1816 REMARK 3 5 1.9296 - 1.7913 0.94 2758 144 0.2497 0.2605 REMARK 3 6 1.7913 - 1.6857 0.94 2788 149 0.2800 0.2853 REMARK 3 7 1.6857 - 1.6013 0.85 2493 134 0.2804 0.2825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.6000 REMARK 3 OPERATOR: K,H,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1408 REMARK 3 ANGLE : 1.315 1916 REMARK 3 CHIRALITY : 0.068 235 REMARK 3 PLANARITY : 0.004 247 REMARK 3 DIHEDRAL : 16.749 516 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:12) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6509 60.0537 6.2345 REMARK 3 T TENSOR REMARK 3 T11: 0.1233 T22: 0.1136 REMARK 3 T33: 0.0476 T12: 0.0005 REMARK 3 T13: -0.0041 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.6832 L22: 2.1735 REMARK 3 L33: 1.3208 L12: -1.0445 REMARK 3 L13: -0.4626 L23: 0.2359 REMARK 3 S TENSOR REMARK 3 S11: -0.0687 S12: 0.0087 S13: 0.0502 REMARK 3 S21: 0.0934 S22: -0.0322 S23: 0.1005 REMARK 3 S31: 0.0090 S32: 0.0143 S33: 0.0829 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 13:27) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4844 62.9860 7.9160 REMARK 3 T TENSOR REMARK 3 T11: 0.1137 T22: 0.1276 REMARK 3 T33: 0.1087 T12: -0.0254 REMARK 3 T13: 0.0016 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3712 L22: 1.4729 REMARK 3 L33: 0.5817 L12: 0.0298 REMARK 3 L13: -0.0720 L23: 0.7973 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.1117 S13: 0.0844 REMARK 3 S21: 0.0488 S22: -0.1582 S23: 0.0811 REMARK 3 S31: -0.0405 S32: -0.0301 S33: 0.0915 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 28:37) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3175 59.0468 13.1891 REMARK 3 T TENSOR REMARK 3 T11: 0.1298 T22: 0.1529 REMARK 3 T33: 0.1847 T12: 0.0117 REMARK 3 T13: 0.0300 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 2.1316 L22: 0.9881 REMARK 3 L33: 1.7196 L12: 0.7334 REMARK 3 L13: 0.2380 L23: -1.0454 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.4489 S13: 0.0861 REMARK 3 S21: 0.2528 S22: -0.1435 S23: -0.0233 REMARK 3 S31: -0.0368 S32: -0.0180 S33: 0.0479 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 38:48) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4836 56.7686 8.0639 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.1256 REMARK 3 T33: 0.0871 T12: -0.0058 REMARK 3 T13: 0.0006 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 1.7157 L22: 2.5399 REMARK 3 L33: 1.1079 L12: -0.3169 REMARK 3 L13: -0.3104 L23: -0.2564 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: 0.0248 S13: -0.0392 REMARK 3 S21: 0.1052 S22: -0.1000 S23: -0.0509 REMARK 3 S31: 0.0946 S32: -0.0723 S33: 0.1960 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 49:60) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4925 71.6463 6.5772 REMARK 3 T TENSOR REMARK 3 T11: 0.1728 T22: 0.1270 REMARK 3 T33: 0.2191 T12: 0.0099 REMARK 3 T13: -0.0044 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 3.6991 L22: 2.5716 REMARK 3 L33: 2.5727 L12: -1.7220 REMARK 3 L13: -2.1324 L23: 1.0563 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.1376 S13: 0.3003 REMARK 3 S21: -0.0129 S22: 0.1132 S23: 0.0651 REMARK 3 S31: -0.3453 S32: 0.0227 S33: -0.0955 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 61:64) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9974 65.1776 -0.7478 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.1345 REMARK 3 T33: 0.1033 T12: -0.0004 REMARK 3 T13: 0.0101 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.0048 L22: 2.8783 REMARK 3 L33: 2.6302 L12: 2.8920 REMARK 3 L13: -2.6239 L23: 1.4174 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: 0.2829 S13: 0.3168 REMARK 3 S21: -0.2016 S22: 0.0081 S23: 0.1634 REMARK 3 S31: -0.3262 S32: 0.0232 S33: -0.0161 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 65:70) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3361 60.5357 -2.7232 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.1770 REMARK 3 T33: 0.1533 T12: 0.0173 REMARK 3 T13: 0.0153 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.5306 L22: 5.7469 REMARK 3 L33: 2.3030 L12: 0.8475 REMARK 3 L13: -0.8949 L23: -0.2862 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.0205 S13: 0.3445 REMARK 3 S21: -0.1093 S22: -0.0918 S23: -0.1297 REMARK 3 S31: -0.0562 S32: -0.0397 S33: 0.1038 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 71:79) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5428 61.3142 1.8974 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.1135 REMARK 3 T33: 0.0615 T12: 0.0018 REMARK 3 T13: -0.0140 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.7340 L22: 0.7325 REMARK 3 L33: 0.6587 L12: 0.1391 REMARK 3 L13: 0.3071 L23: -0.6217 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: 0.2506 S13: 0.1327 REMARK 3 S21: -0.1485 S22: -0.0200 S23: 0.1161 REMARK 3 S31: -0.0188 S32: 0.0662 S33: 0.0514 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 80:83) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8503 66.3045 14.4491 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.0994 REMARK 3 T33: 0.2914 T12: 0.1107 REMARK 3 T13: 0.0916 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 8.0257 L22: 7.5099 REMARK 3 L33: 0.9692 L12: 3.6095 REMARK 3 L13: -2.5555 L23: -0.6160 REMARK 3 S TENSOR REMARK 3 S11: -0.1386 S12: -0.3380 S13: -0.1907 REMARK 3 S21: 0.5026 S22: -0.1280 S23: -0.0510 REMARK 3 S31: -0.2109 S32: 0.1357 S33: 0.1590 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 84:94) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0435 58.0911 17.8335 REMARK 3 T TENSOR REMARK 3 T11: 0.2514 T22: 0.2316 REMARK 3 T33: 0.0951 T12: 0.0012 REMARK 3 T13: 0.0456 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.3835 L22: 2.1144 REMARK 3 L33: 0.9800 L12: -0.8455 REMARK 3 L13: 0.6753 L23: -0.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: -0.3528 S13: -0.0576 REMARK 3 S21: -0.0258 S22: -0.1260 S23: -0.2109 REMARK 3 S31: -0.0001 S32: -0.0244 S33: 0.1925 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 3:10) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4007 54.4479 7.7962 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.1293 REMARK 3 T33: 0.1161 T12: -0.0103 REMARK 3 T13: -0.0016 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.9336 L22: 2.8939 REMARK 3 L33: 1.5163 L12: 1.1758 REMARK 3 L13: 0.7368 L23: 1.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.1518 S13: 0.3532 REMARK 3 S21: 0.0495 S22: -0.0531 S23: -0.0570 REMARK 3 S31: 0.0329 S32: 0.0217 S33: 0.0069 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 11:23) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4277 42.7783 5.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0968 T22: 0.1415 REMARK 3 T33: 0.0934 T12: 0.0268 REMARK 3 T13: 0.0167 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.4403 L22: 1.9978 REMARK 3 L33: 1.2074 L12: 0.5379 REMARK 3 L13: -0.0224 L23: 0.3437 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: -0.2006 S13: 0.0662 REMARK 3 S21: -0.0985 S22: 0.0123 S23: -0.2120 REMARK 3 S31: 0.0445 S32: 0.1170 S33: -0.0467 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 24:32) REMARK 3 ORIGIN FOR THE GROUP (A): 26.9146 51.3865 13.2618 REMARK 3 T TENSOR REMARK 3 T11: 0.1089 T22: 0.2070 REMARK 3 T33: 0.1659 T12: 0.0099 REMARK 3 T13: -0.0331 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 4.6227 L22: 1.2648 REMARK 3 L33: 2.2314 L12: -1.3833 REMARK 3 L13: -2.3249 L23: -0.2514 REMARK 3 S TENSOR REMARK 3 S11: 0.0603 S12: -0.2234 S13: 0.3109 REMARK 3 S21: 0.2363 S22: -0.0042 S23: -0.3595 REMARK 3 S31: -0.1418 S32: 0.1310 S33: -0.0417 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 33:47) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3686 47.7870 8.9645 REMARK 3 T TENSOR REMARK 3 T11: 0.0970 T22: 0.1148 REMARK 3 T33: 0.0741 T12: 0.0089 REMARK 3 T13: -0.0002 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.0191 L22: 1.8342 REMARK 3 L33: 0.9360 L12: 0.6087 REMARK 3 L13: -0.0018 L23: 0.1876 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.2665 S13: 0.0115 REMARK 3 S21: 0.0543 S22: -0.0913 S23: 0.0160 REMARK 3 S31: 0.0638 S32: -0.0322 S33: 0.0304 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 48:58) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8209 57.6342 7.1057 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: 0.1764 REMARK 3 T33: 0.4465 T12: -0.0024 REMARK 3 T13: 0.0408 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.9787 L22: 3.1912 REMARK 3 L33: 1.5679 L12: 0.1717 REMARK 3 L13: -0.2998 L23: 1.9753 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.1005 S13: 0.3120 REMARK 3 S21: -0.0108 S22: 0.0339 S23: -0.2383 REMARK 3 S31: -0.0882 S32: 0.0715 S33: -0.0356 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 59:64) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4905 47.2169 -0.0460 REMARK 3 T TENSOR REMARK 3 T11: 0.1665 T22: 0.2318 REMARK 3 T33: 0.1330 T12: 0.0045 REMARK 3 T13: 0.0619 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 2.8727 L22: 5.0065 REMARK 3 L33: 3.7607 L12: -1.3267 REMARK 3 L13: 1.9572 L23: 2.3624 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: 0.1409 S13: 0.2161 REMARK 3 S21: -0.2185 S22: 0.0684 S23: -0.2744 REMARK 3 S31: -0.1834 S32: 0.3099 S33: -0.0536 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN B AND RESID 65:71) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1228 40.2906 -2.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.1978 REMARK 3 T33: 0.0792 T12: 0.0056 REMARK 3 T13: 0.0342 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 4.4725 L22: 4.5008 REMARK 3 L33: 3.6130 L12: -1.0297 REMARK 3 L13: -0.1121 L23: 0.0723 REMARK 3 S TENSOR REMARK 3 S11: -0.0797 S12: 0.1591 S13: 0.0779 REMARK 3 S21: -0.1312 S22: 0.0355 S23: -0.2854 REMARK 3 S31: -0.1543 S32: 0.1288 S33: 0.0336 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN B AND RESID 72:83) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9624 59.8286 7.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.0547 REMARK 3 T33: 0.1819 T12: -0.0029 REMARK 3 T13: 0.0062 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.1739 L22: 3.5761 REMARK 3 L33: 1.0678 L12: 0.2870 REMARK 3 L13: 0.2133 L23: 0.9472 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.1141 S13: 0.5583 REMARK 3 S21: 0.0038 S22: 0.0106 S23: -0.2863 REMARK 3 S31: -0.0048 S32: 0.2010 S33: -0.1249 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN B AND RESID 84:87) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7197 61.5154 18.4095 REMARK 3 T TENSOR REMARK 3 T11: 0.4290 T22: 0.2340 REMARK 3 T33: -0.7189 T12: 0.0236 REMARK 3 T13: 0.2319 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.5347 L22: 0.8645 REMARK 3 L33: 3.9464 L12: -1.7266 REMARK 3 L13: -2.7526 L23: 1.5570 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.2500 S13: -0.3091 REMARK 3 S21: 0.1496 S22: 0.0830 S23: 0.0531 REMARK 3 S31: 0.3306 S32: -0.0209 S33: 0.0223 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN B AND RESID 88:92) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9550 55.7808 16.3933 REMARK 3 T TENSOR REMARK 3 T11: 0.7284 T22: 0.1113 REMARK 3 T33: -0.0642 T12: 0.3085 REMARK 3 T13: 0.4086 T23: -0.1686 REMARK 3 L TENSOR REMARK 3 L11: 1.3972 L22: 3.0503 REMARK 3 L33: 0.9082 L12: 0.2600 REMARK 3 L13: -1.0853 L23: 0.2463 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.2077 S13: -0.1088 REMARK 3 S21: 0.1890 S22: 0.0631 S23: -0.3260 REMARK 3 S31: 0.0852 S32: 0.1416 S33: 0.0108 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WAS CARRIED OUT WITH REMARK 3 HYDROGEN ATOMS IN THE RIDING POSITIONS FOR THE PURPOSES OF REMARK 3 MAINTAINING GOOD GEOMETRY AND INCLUDING THEIR SCATTERING REMARK 3 CONTRIBUTIONS IN CALCULATED STRUCTURE FACTORS, BUT THEIR REMARK 3 POSITIONS WERE NOT INDEPENDENTLY REFINED AGAINST THE X-RAY DATA. REMARK 3 THESE H ATOMS WERE GENERATED USING PHENIX.REDUCE (WORD, J. M., REMARK 3 ET AL. (1999). J. MOL. BIOL.) AND WERE REMOVED FROM THE MODEL REMARK 3 PRIOR TO DEPOSITION. REMARK 4 REMARK 4 4LIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CONFOCAL MIRRORS VARIMAX HF REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 41.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.24400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.550 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.4 REMARK 200 STARTING MODEL: PDB ENTRY 3DNC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M N-CYCLOHEXYL-2 REMARK 280 -AMINOETHANESULFONIC ACID, 1.26M AMMONIUM SULFATE, 0.15M SODIUM REMARK 280 CHLORIDE, 0.01M GUANIDINIUM CHLORIDE, PH 9.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.12500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.12500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.12500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL UNIT IS A HEXAMER, WHICH CAN BE GENERATED BY REMARK 300 APPLYING THE FOLLOWING SYMMETRY OPERATIONS TO THE TWO CHAINS (A AND REMARK 300 B) IN THE ASYMMETRIC UNIT. CHAIN A: (X, Y, Z), (-X+Y, -X+1, Z), AND REMARK 300 (-Y+1, X-Y+1, Z). CHAIN B: (X, Y, Z), (-Y-1, X-Y+1, Z), AND (-X+Y, - REMARK 300 X+1, Z). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 35.01000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 60.63910 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -35.01000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 60.63910 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 93 REMARK 465 HIS B 94 REMARK 465 HIS B 95 REMARK 465 HIS B 96 REMARK 465 HIS B 97 REMARK 465 HIS B 98 REMARK 465 HIS B 99 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 101 DBREF 4LIW A 1 91 UNP P72760 CCMK1_SYNY3 1 91 DBREF 4LIW B 1 91 UNP P72760 CCMK1_SYNY3 1 91 SEQADV 4LIW LYS A 11 UNP P72760 LEU 11 ENGINEERED MUTATION SEQADV 4LIW LEU A 92 UNP P72760 EXPRESSION TAG SEQADV 4LIW GLU A 93 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS A 94 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS A 95 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS A 96 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS A 97 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS A 98 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS A 99 UNP P72760 EXPRESSION TAG SEQADV 4LIW LYS B 11 UNP P72760 LEU 11 ENGINEERED MUTATION SEQADV 4LIW LEU B 92 UNP P72760 EXPRESSION TAG SEQADV 4LIW GLU B 93 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS B 94 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS B 95 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS B 96 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS B 97 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS B 98 UNP P72760 EXPRESSION TAG SEQADV 4LIW HIS B 99 UNP P72760 EXPRESSION TAG SEQRES 1 A 99 MET SER ILE ALA VAL GLY MET ILE GLU THR LYS GLY PHE SEQRES 2 A 99 PRO ALA VAL VAL GLU ALA ALA ASP SER MET VAL LYS ALA SEQRES 3 A 99 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 A 99 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 A 99 VAL GLN ALA SER VAL THR ALA GLY ILE GLU ASN ILE ARG SEQRES 6 A 99 ARG VAL ASN GLY GLY GLU VAL LEU SER ASN HIS ILE ILE SEQRES 7 A 99 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 A 99 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 MET SER ILE ALA VAL GLY MET ILE GLU THR LYS GLY PHE SEQRES 2 B 99 PRO ALA VAL VAL GLU ALA ALA ASP SER MET VAL LYS ALA SEQRES 3 B 99 ALA ARG VAL THR LEU VAL GLY TYR GLU LYS ILE GLY SER SEQRES 4 B 99 GLY ARG VAL THR VAL ILE VAL ARG GLY ASP VAL SER GLU SEQRES 5 B 99 VAL GLN ALA SER VAL THR ALA GLY ILE GLU ASN ILE ARG SEQRES 6 B 99 ARG VAL ASN GLY GLY GLU VAL LEU SER ASN HIS ILE ILE SEQRES 7 B 99 ALA ARG PRO HIS GLU ASN LEU GLU TYR VAL LEU PRO ILE SEQRES 8 B 99 LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 101 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *51(H2 O) HELIX 1 1 GLY A 12 ALA A 27 1 16 HELIX 2 2 ASP A 49 ARG A 65 1 17 HELIX 3 3 HIS A 82 VAL A 88 5 7 HELIX 4 4 GLY B 12 ALA B 27 1 16 HELIX 5 5 ASP B 49 ILE B 64 1 16 HELIX 6 6 ARG B 65 VAL B 67 5 3 HELIX 7 7 ASN B 84 VAL B 88 5 5 SHEET 1 A 4 VAL A 29 LYS A 36 0 SHEET 2 A 4 ARG A 41 GLY A 48 -1 O THR A 43 N GLU A 35 SHEET 3 A 4 ALA A 4 LYS A 11 -1 N THR A 10 O VAL A 42 SHEET 4 A 4 VAL A 72 ILE A 78 -1 O LEU A 73 N GLU A 9 SHEET 1 B 4 VAL B 29 LYS B 36 0 SHEET 2 B 4 ARG B 41 GLY B 48 -1 O THR B 43 N GLU B 35 SHEET 3 B 4 ALA B 4 LYS B 11 -1 N GLY B 6 O VAL B 46 SHEET 4 B 4 VAL B 72 ILE B 78 -1 O LEU B 73 N GLU B 9 SITE 1 AC1 5 LYS A 25 ARG A 80 LYS B 25 ARG B 80 SITE 2 AC1 5 HOH B 105 CRYST1 70.020 70.020 56.250 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014282 0.008246 0.000000 0.00000 SCALE2 0.000000 0.016491 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017778 0.00000 MASTER 554 0 1 7 8 0 2 6 0 0 0 16 END