HEADER TRANSPORT PROTEIN, NUCLEAR PROTEIN 03-JUL-13 4LIR TITLE CRYSTAL STRUCTURE OF A NUCLEOPORIN 35KDA (NUP35) FROM HOMO SAPIENS AT TITLE 2 2.46 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 151-266; COMPND 5 SYNONYM: 35 KDA NUCLEOPORIN, MITOTIC PHOSPHOPROTEIN 44, MP-44, COMPND 6 NUCLEAR PORE COMPLEX PROTEIN NUP53, NUCLEOPORIN NUP35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BC047029, MP44, NUP35, NUP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF05172 FAMILY, NUP53/35/40-TYPE RNA RECOGNITION MOTIF, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSPORT PROTEIN, NUCLEAR KEYWDS 4 PROTEIN, PARTNERSHIP FOR T-CELL BIOLOGY, TCELL EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG),PARTNERSHIP FOR T-CELL AUTHOR 2 BIOLOGY (TCELL) REVDAT 3 24-JAN-18 4LIR 1 JRNL REVDAT 2 15-NOV-17 4LIR 1 REMARK REVDAT 1 11-SEP-13 4LIR 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG), JRNL AUTH 2 PARTNERSHIP FOR T-CELL BIOLOGY (TCELL) JRNL TITL CRYSTAL STRUCTURE OF A NUCLEOPORIN 35KDA (NUP35) FROM HOMO JRNL TITL 2 SAPIENS AT 2.46 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 9149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 437 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.78 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2493 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1994 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2375 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE : 0.2441 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.73 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 118 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1264 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.08070 REMARK 3 B22 (A**2) : 5.08070 REMARK 3 B33 (A**2) : -10.16140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.385 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1305 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1762 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 602 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 24 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 194 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1305 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 171 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1482 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.99 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.02 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|171 - 250 } REMARK 3 ORIGIN FOR THE GROUP (A): 9.2165 23.8018 0.1026 REMARK 3 T TENSOR REMARK 3 T11: -0.2512 T22: -0.0070 REMARK 3 T33: 0.0692 T12: 0.0142 REMARK 3 T13: 0.0270 T23: -0.2296 REMARK 3 L TENSOR REMARK 3 L11: 5.5242 L22: 5.0122 REMARK 3 L33: 6.1963 L12: -2.3246 REMARK 3 L13: -3.1122 L23: 1.5028 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.8815 S13: -1.1686 REMARK 3 S21: -0.0623 S22: -0.2815 S23: 0.0787 REMARK 3 S31: 0.7169 S32: -0.1138 S33: 0.3467 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|169 - 252 } REMARK 3 ORIGIN FOR THE GROUP (A): -7.7325 28.8146 13.1949 REMARK 3 T TENSOR REMARK 3 T11: -0.2589 T22: 0.0014 REMARK 3 T33: 0.0627 T12: -0.0697 REMARK 3 T13: 0.1057 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 6.3708 L22: 3.4411 REMARK 3 L33: 4.7722 L12: -0.7109 REMARK 3 L13: 0.4965 L23: 0.0841 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: -0.1003 S13: -1.0631 REMARK 3 S21: 0.4539 S22: -0.0033 S23: 0.5546 REMARK 3 S31: 0.3270 S32: -0.8668 S33: 0.1258 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE REFINEMENT WAS RESTRAINED AGAINST THE MAD REMARK 3 PHASES. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). REMARK 4 REMARK 4 4LIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97949,0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9217 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 28.558 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.98200 REMARK 200 R SYM FOR SHELL (I) : 0.98200 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.0% MPD, 0.1M CITRATE PH 4.0, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.79333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.39667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.09500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.69833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 133.49167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.79333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.39667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.69833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.09500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 133.49167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER REMARK 300 AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 151 REMARK 465 PRO A 152 REMARK 465 ALA A 153 REMARK 465 GLN A 154 REMARK 465 LEU A 155 REMARK 465 ASP A 156 REMARK 465 PRO A 157 REMARK 465 PHE A 158 REMARK 465 TYR A 159 REMARK 465 THR A 160 REMARK 465 GLN A 161 REMARK 465 GLY A 162 REMARK 465 ASP A 163 REMARK 465 SER A 164 REMARK 465 LEU A 165 REMARK 465 THR A 166 REMARK 465 SER A 167 REMARK 465 GLU A 168 REMARK 465 ASP A 169 REMARK 465 HIS A 170 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 ASP A 253 REMARK 465 ARG A 254 REMARK 465 CYS A 255 REMARK 465 ALA A 256 REMARK 465 LEU A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 PRO A 260 REMARK 465 SER A 261 REMARK 465 LEU A 262 REMARK 465 ALA A 263 REMARK 465 PHE A 264 REMARK 465 THR A 265 REMARK 465 PRO A 266 REMARK 465 GLY B 0 REMARK 465 SER B 151 REMARK 465 PRO B 152 REMARK 465 ALA B 153 REMARK 465 GLN B 154 REMARK 465 LEU B 155 REMARK 465 ASP B 156 REMARK 465 PRO B 157 REMARK 465 PHE B 158 REMARK 465 TYR B 159 REMARK 465 THR B 160 REMARK 465 GLN B 161 REMARK 465 GLY B 162 REMARK 465 ASP B 163 REMARK 465 SER B 164 REMARK 465 LEU B 165 REMARK 465 THR B 166 REMARK 465 SER B 167 REMARK 465 GLU B 168 REMARK 465 ASP B 253 REMARK 465 ARG B 254 REMARK 465 CYS B 255 REMARK 465 ALA B 256 REMARK 465 LEU B 257 REMARK 465 SER B 258 REMARK 465 SER B 259 REMARK 465 PRO B 260 REMARK 465 SER B 261 REMARK 465 LEU B 262 REMARK 465 ALA B 263 REMARK 465 PHE B 264 REMARK 465 THR B 265 REMARK 465 PRO B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 171 CG CD1 CD2 REMARK 470 ASP A 172 CG OD1 OD2 REMARK 470 ASN A 206 CG OD1 ND2 REMARK 470 LYS A 218 CD CE NZ REMARK 470 ARG A 222 CD NE CZ NH1 NH2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 ASP B 169 CG OD1 OD2 REMARK 470 LEU B 171 CG CD1 CD2 REMARK 470 LYS B 223 CD CE NZ REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 209 45.36 -88.90 REMARK 500 ASN B 209 48.98 -85.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-422743 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 151-266) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4LIR A 151 266 UNP Q8NFH5 NUP53_HUMAN 151 266 DBREF 4LIR B 151 266 UNP Q8NFH5 NUP53_HUMAN 151 266 SEQADV 4LIR GLY A 0 UNP Q8NFH5 LEADER SEQUENCE SEQADV 4LIR GLY B 0 UNP Q8NFH5 LEADER SEQUENCE SEQRES 1 A 117 GLY SER PRO ALA GLN LEU ASP PRO PHE TYR THR GLN GLY SEQRES 2 A 117 ASP SER LEU THR SER GLU ASP HIS LEU ASP ASP SER TRP SEQRES 3 A 117 VAL THR VAL PHE GLY PHE PRO GLN ALA SER ALA SER TYR SEQRES 4 A 117 ILE LEU LEU GLN PHE ALA GLN TYR GLY ASN ILE LEU LYS SEQRES 5 A 117 HIS VAL MSE SER ASN THR GLY ASN TRP MSE HIS ILE ARG SEQRES 6 A 117 TYR GLN SER LYS LEU GLN ALA ARG LYS ALA LEU SER LYS SEQRES 7 A 117 ASP GLY ARG ILE PHE GLY GLU SER ILE MSE ILE GLY VAL SEQRES 8 A 117 LYS PRO CYS ILE ASP LYS SER VAL MSE GLU SER SER ASP SEQRES 9 A 117 ARG CYS ALA LEU SER SER PRO SER LEU ALA PHE THR PRO SEQRES 1 B 117 GLY SER PRO ALA GLN LEU ASP PRO PHE TYR THR GLN GLY SEQRES 2 B 117 ASP SER LEU THR SER GLU ASP HIS LEU ASP ASP SER TRP SEQRES 3 B 117 VAL THR VAL PHE GLY PHE PRO GLN ALA SER ALA SER TYR SEQRES 4 B 117 ILE LEU LEU GLN PHE ALA GLN TYR GLY ASN ILE LEU LYS SEQRES 5 B 117 HIS VAL MSE SER ASN THR GLY ASN TRP MSE HIS ILE ARG SEQRES 6 B 117 TYR GLN SER LYS LEU GLN ALA ARG LYS ALA LEU SER LYS SEQRES 7 B 117 ASP GLY ARG ILE PHE GLY GLU SER ILE MSE ILE GLY VAL SEQRES 8 B 117 LYS PRO CYS ILE ASP LYS SER VAL MSE GLU SER SER ASP SEQRES 9 B 117 ARG CYS ALA LEU SER SER PRO SER LEU ALA PHE THR PRO MODRES 4LIR MSE A 204 MET SELENOMETHIONINE MODRES 4LIR MSE A 211 MET SELENOMETHIONINE MODRES 4LIR MSE A 237 MET SELENOMETHIONINE MODRES 4LIR MSE A 249 MET SELENOMETHIONINE MODRES 4LIR MSE B 204 MET SELENOMETHIONINE MODRES 4LIR MSE B 211 MET SELENOMETHIONINE MODRES 4LIR MSE B 237 MET SELENOMETHIONINE MODRES 4LIR MSE B 249 MET SELENOMETHIONINE HET MSE A 204 13 HET MSE A 211 8 HET MSE A 237 8 HET MSE A 249 8 HET MSE B 204 13 HET MSE B 211 8 HET MSE B 237 8 HET MSE B 249 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 HOH *12(H2 O) HELIX 1 1 LEU A 171 ASP A 173 5 3 HELIX 2 2 PRO A 182 ALA A 184 5 3 HELIX 3 3 SER A 185 ALA A 194 1 10 HELIX 4 4 SER A 217 SER A 226 1 10 HELIX 5 5 ASP A 245 GLU A 250 1 6 HELIX 6 6 ASP B 169 ASP B 173 5 5 HELIX 7 7 PRO B 182 ALA B 184 5 3 HELIX 8 8 SER B 185 ALA B 194 1 10 HELIX 9 9 SER B 217 SER B 226 1 10 HELIX 10 10 ASP B 245 SER B 252 1 8 SHEET 1 A 5 ILE A 199 MSE A 204 0 SHEET 2 A 5 TRP A 210 TYR A 215 -1 O ARG A 214 N LYS A 201 SHEET 3 A 5 TRP A 175 PHE A 179 -1 N VAL A 176 O ILE A 213 SHEET 4 A 5 ILE A 236 PRO A 242 -1 O LYS A 241 N THR A 177 SHEET 5 A 5 ARG A 230 PHE A 232 -1 N PHE A 232 O ILE A 236 SHEET 1 B 4 ILE B 199 MSE B 204 0 SHEET 2 B 4 TRP B 210 TYR B 215 -1 O ARG B 214 N LYS B 201 SHEET 3 B 4 TRP B 175 PHE B 179 -1 N VAL B 176 O ILE B 213 SHEET 4 B 4 GLY B 239 PRO B 242 -1 O LYS B 241 N THR B 177 SHEET 1 C 2 ILE B 231 PHE B 232 0 SHEET 2 C 2 ILE B 236 MSE B 237 -1 O ILE B 236 N PHE B 232 LINK C VAL A 203 N MSE A 204 1555 1555 1.34 LINK C MSE A 204 N SER A 205 1555 1555 1.34 LINK C TRP A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N HIS A 212 1555 1555 1.33 LINK C ILE A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N ILE A 238 1555 1555 1.34 LINK C VAL A 248 N MSE A 249 1555 1555 1.35 LINK C MSE A 249 N GLU A 250 1555 1555 1.36 LINK C VAL B 203 N MSE B 204 1555 1555 1.34 LINK C MSE B 204 N SER B 205 1555 1555 1.35 LINK C TRP B 210 N MSE B 211 1555 1555 1.33 LINK C MSE B 211 N HIS B 212 1555 1555 1.34 LINK C ILE B 236 N MSE B 237 1555 1555 1.33 LINK C MSE B 237 N ILE B 238 1555 1555 1.33 LINK C VAL B 248 N MSE B 249 1555 1555 1.34 LINK C MSE B 249 N GLU B 250 1555 1555 1.35 CRYST1 70.590 70.590 160.190 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014166 0.008179 0.000000 0.00000 SCALE2 0.000000 0.016358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006243 0.00000 MASTER 419 0 8 10 11 0 0 6 0 0 0 18 END