HEADER TRANSFERASE 11-JUN-13 4L5O TITLE CRYSTAL STRUCTURE OF 26 KDA GST D26H MUTANT OF CLONORCHIS SINENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE GLUTATHIONE TRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLONORCHIS SINENSIS; SOURCE 3 ORGANISM_COMMON: ORIENTAL LIVER FLUKE; SOURCE 4 ORGANISM_TAXID: 79923; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS TRANSFERASE, GSH BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.CHUNG,Y.H.HAN REVDAT 3 15-NOV-17 4L5O 1 REMARK REVDAT 2 17-JUN-15 4L5O 1 JRNL REVDAT 1 11-SEP-13 4L5O 0 JRNL AUTH Y.H.HAN,S.J.HONG,H.K.CHEONG,Y.J.CHUNG JRNL TITL CRYSTAL STRUCTURES OF 26KDA CLONORCHIS SINENSIS GLUTATHIONE JRNL TITL 2 S-TRANSFERASE REVEAL ZINC BINDING AND PUTATIVE METAL JRNL TITL 3 BINDING. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 438 457 2013 JRNL REFN ISSN 0006-291X JRNL PMID 23916611 JRNL DOI 10.1016/J.BBRC.2013.07.102 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 56931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4125 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 236 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5286 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.26000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.26000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5538 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5129 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7518 ; 1.768 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11752 ; 0.843 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 6.011 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;33.184 ;23.582 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 892 ;15.793 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.671 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 775 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6251 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1344 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.089 REMARK 200 RESOLUTION RANGE LOW (A) : 85.191 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.19300 REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.01900 REMARK 200 R SYM FOR SHELL (I) : 1.92800 REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH8.5, 5MM ZINC SULFATE, REMARK 280 2.0M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.50033 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.00067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.00067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 59.50033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ONE BIOLOGICAL DIMER AND ONE MONOMER ARE IN ASYMMETRIC REMARK 300 UNIT. THE BIOLOGICAL ASSEMBLY OF THE MONOMER IS GENERATED BY THE REMARK 300 THREE FOLD AXIS : -X, -X+Y, -Z+1/3 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 59.50033 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 LYS B 218 REMARK 465 LYS C 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS C 31 O HOH C 488 1.79 REMARK 500 C PRO C 217 O HOH C 430 2.02 REMARK 500 OE2 GLU C 29 O HOH C 488 2.09 REMARK 500 OD2 ASP B 166 OG SER B 169 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR C 122 CE1 TYR C 122 CZ -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 18 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU B 72 CB - CG - CD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG B 131 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG C 11 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 11 -88.60 -68.34 REMARK 500 GLN A 67 113.79 76.79 REMARK 500 ARG B 11 -77.71 -69.11 REMARK 500 HIS B 26 96.37 -58.96 REMARK 500 LYS B 45 -58.68 -20.59 REMARK 500 ASN B 54 163.15 176.14 REMARK 500 GLN B 67 108.64 77.70 REMARK 500 THR B 114 14.86 -64.64 REMARK 500 ASP B 166 89.47 -159.15 REMARK 500 ARG C 11 -73.33 -77.02 REMARK 500 GLN C 67 107.22 78.56 REMARK 500 ALA C 172 -9.08 -58.21 REMARK 500 ASN C 204 -168.79 -113.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 26 NE2 REMARK 620 2 HIS C 26 NE2 128.5 REMARK 620 3 HIS A 79 NE2 98.0 113.4 REMARK 620 4 HIS C 79 NE2 112.4 97.2 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISO RELATED DB: PDB REMARK 900 RELATED ID: 4L5L RELATED DB: PDB DBREF 4L5O A 1 218 UNP Q25595 Q25595_CLOSI 1 218 DBREF 4L5O B 1 218 UNP Q25595 Q25595_CLOSI 1 218 DBREF 4L5O C 1 218 UNP Q25595 Q25595_CLOSI 1 218 SEQADV 4L5O HIS A 26 UNP Q25595 ASP 26 ENGINEERED MUTATION SEQADV 4L5O HIS B 26 UNP Q25595 ASP 26 ENGINEERED MUTATION SEQADV 4L5O HIS C 26 UNP Q25595 ASP 26 ENGINEERED MUTATION SEQRES 1 A 218 MET ALA PRO VAL LEU GLY TYR TRP LYS ILE ARG GLY LEU SEQRES 2 A 218 ALA GLN PRO ILE ARG LEU LEU LEU GLU TYR VAL GLY HIS SEQRES 3 A 218 SER TYR GLU GLU HIS SER TYR GLY ARG CYS ASP GLY GLU SEQRES 4 A 218 LYS TRP GLN ASN ASP LYS HIS ASN LEU GLY LEU GLU LEU SEQRES 5 A 218 PRO ASN LEU PRO TYR TYR LYS ASP GLY ASN PHE SER LEU SEQRES 6 A 218 THR GLN SER LEU ALA ILE LEU ARG TYR ILE ALA ASP LYS SEQRES 7 A 218 HIS ASN MET ILE GLY ASN THR PRO VAL GLU ARG ALA LYS SEQRES 8 A 218 ILE SER MET ILE GLU GLY GLY LEU VAL ASP LEU ARG ALA SEQRES 9 A 218 GLY VAL SER ARG ILE ALA TYR GLN GLU THR PHE GLU GLN SEQRES 10 A 218 LEU LYS VAL PRO TYR LEU GLN GLN LEU PRO SER THR LEU SEQRES 11 A 218 ARG MET TRP SER GLN PHE LEU GLY ASN ASN SER TYR LEU SEQRES 12 A 218 HIS GLY SER THR PRO THR HIS LEU ASP PHE MET PHE TYR SEQRES 13 A 218 GLU ALA LEU ASP VAL ILE ARG TYR LEU ASP PRO THR SER SEQRES 14 A 218 VAL GLU ALA PHE PRO ASN LEU MET GLN PHE ILE HIS ARG SEQRES 15 A 218 ILE GLU ALA LEU PRO ASN ILE LYS ALA PHE MET GLU SER SEQRES 16 A 218 ASP ARG PHE ILE LYS TRP PRO LEU ASN GLY TRP SER ALA SEQRES 17 A 218 TYR PHE GLY GLY GLY ASP ALA PRO PRO LYS SEQRES 1 B 218 MET ALA PRO VAL LEU GLY TYR TRP LYS ILE ARG GLY LEU SEQRES 2 B 218 ALA GLN PRO ILE ARG LEU LEU LEU GLU TYR VAL GLY HIS SEQRES 3 B 218 SER TYR GLU GLU HIS SER TYR GLY ARG CYS ASP GLY GLU SEQRES 4 B 218 LYS TRP GLN ASN ASP LYS HIS ASN LEU GLY LEU GLU LEU SEQRES 5 B 218 PRO ASN LEU PRO TYR TYR LYS ASP GLY ASN PHE SER LEU SEQRES 6 B 218 THR GLN SER LEU ALA ILE LEU ARG TYR ILE ALA ASP LYS SEQRES 7 B 218 HIS ASN MET ILE GLY ASN THR PRO VAL GLU ARG ALA LYS SEQRES 8 B 218 ILE SER MET ILE GLU GLY GLY LEU VAL ASP LEU ARG ALA SEQRES 9 B 218 GLY VAL SER ARG ILE ALA TYR GLN GLU THR PHE GLU GLN SEQRES 10 B 218 LEU LYS VAL PRO TYR LEU GLN GLN LEU PRO SER THR LEU SEQRES 11 B 218 ARG MET TRP SER GLN PHE LEU GLY ASN ASN SER TYR LEU SEQRES 12 B 218 HIS GLY SER THR PRO THR HIS LEU ASP PHE MET PHE TYR SEQRES 13 B 218 GLU ALA LEU ASP VAL ILE ARG TYR LEU ASP PRO THR SER SEQRES 14 B 218 VAL GLU ALA PHE PRO ASN LEU MET GLN PHE ILE HIS ARG SEQRES 15 B 218 ILE GLU ALA LEU PRO ASN ILE LYS ALA PHE MET GLU SER SEQRES 16 B 218 ASP ARG PHE ILE LYS TRP PRO LEU ASN GLY TRP SER ALA SEQRES 17 B 218 TYR PHE GLY GLY GLY ASP ALA PRO PRO LYS SEQRES 1 C 218 MET ALA PRO VAL LEU GLY TYR TRP LYS ILE ARG GLY LEU SEQRES 2 C 218 ALA GLN PRO ILE ARG LEU LEU LEU GLU TYR VAL GLY HIS SEQRES 3 C 218 SER TYR GLU GLU HIS SER TYR GLY ARG CYS ASP GLY GLU SEQRES 4 C 218 LYS TRP GLN ASN ASP LYS HIS ASN LEU GLY LEU GLU LEU SEQRES 5 C 218 PRO ASN LEU PRO TYR TYR LYS ASP GLY ASN PHE SER LEU SEQRES 6 C 218 THR GLN SER LEU ALA ILE LEU ARG TYR ILE ALA ASP LYS SEQRES 7 C 218 HIS ASN MET ILE GLY ASN THR PRO VAL GLU ARG ALA LYS SEQRES 8 C 218 ILE SER MET ILE GLU GLY GLY LEU VAL ASP LEU ARG ALA SEQRES 9 C 218 GLY VAL SER ARG ILE ALA TYR GLN GLU THR PHE GLU GLN SEQRES 10 C 218 LEU LYS VAL PRO TYR LEU GLN GLN LEU PRO SER THR LEU SEQRES 11 C 218 ARG MET TRP SER GLN PHE LEU GLY ASN ASN SER TYR LEU SEQRES 12 C 218 HIS GLY SER THR PRO THR HIS LEU ASP PHE MET PHE TYR SEQRES 13 C 218 GLU ALA LEU ASP VAL ILE ARG TYR LEU ASP PRO THR SER SEQRES 14 C 218 VAL GLU ALA PHE PRO ASN LEU MET GLN PHE ILE HIS ARG SEQRES 15 C 218 ILE GLU ALA LEU PRO ASN ILE LYS ALA PHE MET GLU SER SEQRES 16 C 218 ASP ARG PHE ILE LYS TRP PRO LEU ASN GLY TRP SER ALA SEQRES 17 C 218 TYR PHE GLY GLY GLY ASP ALA PRO PRO LYS HET GSH A 301 20 HET SO4 A 302 5 HET ZN A 303 1 HET GSH B 301 20 HET SO4 B 302 5 HET ZN B 303 1 HET GSH C 301 20 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HET SO4 C 305 5 HETNAM GSH GLUTATHIONE HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 4 GSH 3(C10 H17 N3 O6 S) FORMUL 5 SO4 6(O4 S 2-) FORMUL 6 ZN 2(ZN 2+) FORMUL 15 HOH *255(H2 O) HELIX 1 1 ARG A 11 LEU A 13 5 3 HELIX 2 2 ALA A 14 GLY A 25 1 12 HELIX 3 3 ASP A 37 HIS A 46 1 10 HELIX 4 4 GLN A 67 HIS A 79 1 13 HELIX 5 5 THR A 85 TYR A 111 1 27 HELIX 6 6 THR A 114 GLY A 138 1 25 HELIX 7 7 THR A 149 ASP A 166 1 18 HELIX 8 8 ASP A 166 ALA A 172 1 7 HELIX 9 9 PHE A 173 ALA A 185 1 13 HELIX 10 10 LEU A 186 GLU A 194 1 9 HELIX 11 11 ALA B 14 GLY B 25 1 12 HELIX 12 12 ASP B 37 LYS B 45 1 9 HELIX 13 13 HIS B 46 LEU B 48 5 3 HELIX 14 14 GLN B 67 HIS B 79 1 13 HELIX 15 15 THR B 85 TYR B 111 1 27 HELIX 16 16 THR B 114 GLY B 138 1 25 HELIX 17 17 THR B 149 ASP B 166 1 18 HELIX 18 18 ASP B 166 ALA B 172 1 7 HELIX 19 19 PHE B 173 LEU B 186 1 14 HELIX 20 20 LEU B 186 GLU B 194 1 9 HELIX 21 21 ARG C 11 LEU C 13 5 3 HELIX 22 22 ALA C 14 GLY C 25 1 12 HELIX 23 23 ASP C 37 HIS C 46 1 10 HELIX 24 24 GLN C 67 LYS C 78 1 12 HELIX 25 25 THR C 85 TYR C 111 1 27 HELIX 26 26 THR C 114 GLY C 138 1 25 HELIX 27 27 THR C 149 ASP C 166 1 18 HELIX 28 28 ASP C 166 ALA C 172 1 7 HELIX 29 29 PHE C 173 ALA C 185 1 13 HELIX 30 30 LEU C 186 GLU C 194 1 9 SHEET 1 A 4 GLU A 29 TYR A 33 0 SHEET 2 A 4 VAL A 4 TRP A 8 1 N LEU A 5 O GLU A 29 SHEET 3 A 4 TYR A 57 ASP A 60 -1 O LYS A 59 N VAL A 4 SHEET 4 A 4 PHE A 63 THR A 66 -1 O PHE A 63 N ASP A 60 SHEET 1 B 4 GLU B 29 TYR B 33 0 SHEET 2 B 4 VAL B 4 TRP B 8 1 N LEU B 5 O GLU B 29 SHEET 3 B 4 TYR B 57 ASP B 60 -1 O LYS B 59 N VAL B 4 SHEET 4 B 4 PHE B 63 THR B 66 -1 O PHE B 63 N ASP B 60 SHEET 1 C 4 GLU C 29 TYR C 33 0 SHEET 2 C 4 VAL C 4 TRP C 8 1 N LEU C 5 O GLU C 29 SHEET 3 C 4 TYR C 57 ASP C 60 -1 O LYS C 59 N VAL C 4 SHEET 4 C 4 PHE C 63 THR C 66 -1 O PHE C 63 N ASP C 60 LINK NE2 HIS A 26 ZN ZN A 303 1555 1555 1.89 LINK NE2 HIS C 26 ZN ZN A 303 1555 1555 1.97 LINK NE2 HIS A 79 ZN ZN A 303 1555 1555 2.05 LINK NE2 HIS C 79 ZN ZN A 303 1555 1555 2.08 LINK NE2 HIS B 79 ZN ZN B 303 1555 1555 2.19 CISPEP 1 LEU A 55 PRO A 56 0 3.87 CISPEP 2 TRP A 201 PRO A 202 0 2.52 CISPEP 3 LEU B 55 PRO B 56 0 9.98 CISPEP 4 TRP B 201 PRO B 202 0 -1.91 CISPEP 5 LEU C 55 PRO C 56 0 1.57 CISPEP 6 TRP C 201 PRO C 202 0 -3.48 SITE 1 AC1 14 TYR A 7 TRP A 8 LEU A 13 TRP A 41 SITE 2 AC1 14 LYS A 45 ASN A 54 LEU A 55 GLN A 67 SITE 3 AC1 14 SER A 68 HOH A 402 HOH A 405 HOH A 414 SITE 4 AC1 14 ASP B 101 HOH B 416 SITE 1 AC2 3 ARG A 35 GLY A 213 ASP A 214 SITE 1 AC3 4 HIS A 26 HIS A 79 HIS C 26 HIS C 79 SITE 1 AC4 13 ASP A 101 TYR B 7 TRP B 8 LEU B 13 SITE 2 AC4 13 TRP B 41 LYS B 45 ASN B 54 LEU B 55 SITE 3 AC4 13 PRO B 56 GLN B 67 SER B 68 HOH B 404 SITE 4 AC4 13 HOH B 405 SITE 1 AC5 3 ASN B 140 SER B 141 SER B 146 SITE 1 AC6 2 HIS B 26 HIS B 79 SITE 1 AC7 12 TYR C 7 TRP C 8 LEU C 13 TRP C 41 SITE 2 AC7 12 LYS C 45 ASN C 54 LEU C 55 PRO C 56 SITE 3 AC7 12 GLN C 67 SER C 68 ASP C 101 HOH C 411 SITE 1 AC8 4 HIS A 26 LYS A 78 HIS C 26 LYS C 78 SITE 1 AC9 3 ARG C 35 GLY C 213 ASP C 214 SITE 1 BC1 3 ASN C 140 SER C 141 SER C 146 SITE 1 BC2 1 ARG C 182 CRYST1 98.370 98.370 178.501 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010166 0.005869 0.000000 0.00000 SCALE2 0.000000 0.011738 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005602 0.00000 MASTER 421 0 11 30 12 0 19 6 0 0 0 51 END