HEADER TRANSFERASE 10-JUN-13 4L56 TITLE TRNA GUANINE TRANSGLYCOSYLASE H333D MUTANT APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRP-IBA2 KEYWDS TGT, DIMER INTERFACE, GLYCOSYLTRANSFERASE, TRANSFERASE, TRNA KEYWDS 2 PROCESSING, METAL-BINDING, QUEUOSINE, TRNA, ZINC BINDING, GUANINE KEYWDS 3 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR T.X.P.NGUYEN,A.HEINE,G.KLEBE REVDAT 2 02-SEP-15 4L56 1 JRNL REVDAT 1 24-DEC-14 4L56 0 JRNL AUTH S.JAKOBI,P.T.NGUYEN,F.DEBAENE,S.CIANFERANI,K.REUTER,G.KLEBE JRNL TITL WHAT GLUES A HOMODIMER TOGETHER: SYSTEMATIC ANALYSIS OF THE JRNL TITL 2 STABILIZING EFFECT OF AN AROMATIC HOT SPOT IN THE JRNL TITL 3 PROTEIN-PROTEIN INTERFACE OF THE TRNA-MODIFYING ENZYME TGT. JRNL REF ACS CHEM.BIOL. V. 10 1897 2015 JRNL REFN ISSN 1554-8929 JRNL PMID 25951081 JRNL DOI 10.1021/ACSCHEMBIO.5B00028 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 46321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3950 - 4.3594 0.95 2547 141 0.1754 0.1738 REMARK 3 2 4.3594 - 3.4619 0.99 2608 148 0.1447 0.1588 REMARK 3 3 3.4619 - 3.0248 0.99 2566 157 0.1554 0.1717 REMARK 3 4 3.0248 - 2.7485 0.99 2596 130 0.1668 0.2308 REMARK 3 5 2.7485 - 2.5516 1.00 2607 154 0.1575 0.1541 REMARK 3 6 2.5516 - 2.4012 1.00 2599 119 0.1569 0.2090 REMARK 3 7 2.4012 - 2.2810 1.00 2630 144 0.1470 0.1780 REMARK 3 8 2.2810 - 2.1818 1.00 2596 131 0.1488 0.2042 REMARK 3 9 2.1818 - 2.0978 1.00 2633 125 0.1426 0.1574 REMARK 3 10 2.0978 - 2.0254 1.00 2587 147 0.1481 0.1668 REMARK 3 11 2.0254 - 1.9621 1.00 2601 141 0.1521 0.2011 REMARK 3 12 1.9621 - 1.9060 1.00 2595 145 0.1576 0.1920 REMARK 3 13 1.9060 - 1.8559 1.00 2590 153 0.1664 0.1956 REMARK 3 14 1.8559 - 1.8106 1.00 2589 127 0.1780 0.2214 REMARK 3 15 1.8106 - 1.7694 1.00 2621 140 0.1891 0.2317 REMARK 3 16 1.7694 - 1.7318 1.00 2572 140 0.2071 0.2649 REMARK 3 17 1.7318 - 1.7000 0.94 2449 93 0.2226 0.2746 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2935 REMARK 3 ANGLE : 1.406 3959 REMARK 3 CHIRALITY : 0.100 417 REMARK 3 PLANARITY : 0.008 524 REMARK 3 DIHEDRAL : 12.901 1077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 10:160) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8633 11.6880 89.8845 REMARK 3 T TENSOR REMARK 3 T11: 0.0361 T22: 0.0587 REMARK 3 T33: 0.0758 T12: 0.0046 REMARK 3 T13: -0.0405 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.0483 L22: 0.8730 REMARK 3 L33: 1.7350 L12: 0.0791 REMARK 3 L13: 0.2422 L23: 0.5324 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: 0.2278 S13: 0.0951 REMARK 3 S21: -0.2246 S22: -0.1218 S23: 0.2102 REMARK 3 S31: -0.2575 S32: -0.3132 S33: -0.1411 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 161:281) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6648 14.8778 94.8683 REMARK 3 T TENSOR REMARK 3 T11: 0.0587 T22: 0.0401 REMARK 3 T33: 0.0737 T12: -0.0125 REMARK 3 T13: 0.0063 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6249 L22: 1.0563 REMARK 3 L33: 0.9368 L12: -0.3801 REMARK 3 L13: -0.0810 L23: 0.6331 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: -0.0082 S13: 0.0806 REMARK 3 S21: -0.0587 S22: 0.0252 S23: -0.1167 REMARK 3 S31: -0.1736 S32: 0.0642 S33: 0.1382 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 282:383) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0690 8.4809 66.5816 REMARK 3 T TENSOR REMARK 3 T11: 0.1937 T22: 0.1164 REMARK 3 T33: -0.0016 T12: -0.0158 REMARK 3 T13: 0.0062 T23: 0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.0598 L22: 1.1729 REMARK 3 L33: 0.7617 L12: -0.1552 REMARK 3 L13: -0.2020 L23: -0.3592 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: 0.1559 S13: 0.1096 REMARK 3 S21: -0.6461 S22: 0.0586 S23: -0.1539 REMARK 3 S31: 0.1680 S32: -0.0342 S33: 0.3671 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L56 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-13. REMARK 100 THE RCSB ID CODE IS RCSB080194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.85507 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : SILICON, ACTIVE SURFACE 50 NM RH REMARK 200 -COATED REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49500 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS 10% DMSO 7% PEG 8000, PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.52450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.59900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.52450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.59900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -14.27368 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 138.35969 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 LEU A 283 REMARK 465 PRO A 284 REMARK 465 THR A 285 REMARK 465 ARG A 286 REMARK 465 SER A 287 REMARK 465 GLY A 288 REMARK 465 ARG A 289 REMARK 465 ASN A 290 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 85 CE NZ REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 MET A 109 CG SD CE REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 158 SG REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLU A 220 CD OE1 OE2 REMARK 470 VAL A 282 CG1 CG2 REMARK 470 ARG A 306 NE CZ NH1 NH2 REMARK 470 HIS A 319 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 205 -134.35 56.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 349 ND1 REMARK 620 2 CYS A 320 SG 116.6 REMARK 620 3 CYS A 318 SG 104.3 106.0 REMARK 620 4 CYS A 323 SG 99.0 115.6 115.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PUD RELATED DB: PDB REMARK 900 RELATED ID: 3BLD RELATED DB: PDB REMARK 900 RELATED ID: 3UNT RELATED DB: PDB REMARK 900 RELATED ID: 4KWO RELATED DB: PDB DBREF 4L56 A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 4L56 GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 4L56 ALA A 0 UNP P28720 EXPRESSION TAG SEQADV 4L56 LYS A 312 UNP P28720 THR 312 CONFLICT SEQADV 4L56 ASP A 333 UNP P28720 HIS 333 ENGINEERED MUTATION SEQRES 1 A 388 GLY ALA MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA TYR ILE HIS ASP LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 HOH *273(H2 O) HELIX 1 1 ALA A 48 LEU A 54 1 7 HELIX 2 2 LYS A 55 THR A 62 1 8 HELIX 3 3 ASN A 70 ARG A 77 1 8 HELIX 4 4 GLY A 79 LEU A 86 1 8 HELIX 5 5 GLY A 88 GLY A 94 1 7 HELIX 6 6 GLY A 104 SER A 112 1 9 HELIX 7 7 SER A 136 GLY A 148 1 13 HELIX 8 8 THR A 164 SER A 188 1 25 HELIX 9 9 ARG A 189 ALA A 196 1 8 HELIX 10 10 PHE A 207 GLY A 222 1 16 HELIX 11 11 GLY A 236 VAL A 248 1 13 HELIX 12 12 PRO A 249 LEU A 251 5 3 HELIX 13 13 LYS A 264 ARG A 274 1 11 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 A 3 GLY A 35 THR A 39 -1 O THR A 39 N GLY A 28 SHEET 1 B 8 ALA A 41 MET A 43 0 SHEET 2 B 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 B 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 8 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 C 3 LYS A 116 GLN A 117 0 SHEET 2 C 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 ARG A 132 LEU A 135 -1 O HIS A 133 N PHE A 124 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.10 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.33 CISPEP 1 THR A 39 PRO A 40 0 0.82 CISPEP 2 ARG A 77 PRO A 78 0 8.51 CISPEP 3 TYR A 161 PRO A 162 0 -3.26 CISPEP 4 VAL A 262 GLY A 263 0 0.37 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 6 PRO A 56 ARG A 60 GLY A 94 TRP A 95 SITE 2 AC2 6 ASP A 96 ARG A 97 SITE 1 AC3 7 GLY A 105 GLN A 117 ASP A 156 GLU A 157 SITE 2 AC3 7 CYS A 158 TRP A 178 HOH A 647 SITE 1 AC4 7 TRP A 296 GLU A 317 LYS A 360 PHE A 377 SITE 2 AC4 7 ARG A 380 HOH A 551 HOH A 674 SITE 1 AC5 2 GLN A 117 ARG A 174 SITE 1 AC6 7 ARG A 34 HIS A 145 GLY A 148 SER A 149 SITE 2 AC6 7 GLN A 192 HOH A 535 HOH A 728 SITE 1 AC7 6 ARG A 38 THR A 62 GLY A 63 GLN A 355 SITE 2 AC7 6 GLN A 356 GLN A 359 SITE 1 AC8 2 LYS A 190 GLU A 194 CRYST1 95.049 65.198 69.547 90.00 95.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010521 0.000000 0.001086 0.00000 SCALE2 0.000000 0.015338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014455 0.00000 MASTER 383 0 8 18 16 0 13 6 0 0 0 30 END