HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-JUN-13 4L52 TITLE CRYSTAL STRUCTURE OF 1-(4-{4-[7-AMINO-2-(1,2,3-BENZOTHIADIAZOL-7-YL) TITLE 2 FURO[2,3-C]PYRIDIN-4-YL]-1H-PYRAZOL-1-YL}PIPERIDIN-1-YL)ETHAN-1-ONE TITLE 3 BOUND TO TAK1-TAB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 7, TGF-BETA- COMPND 3 ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN 1 CHIMERA; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SEE REMARK 999; COMPND 6 SYNONYM: TAK1-TAB1 FUSION PROTEIN, TRANSFORMING GROWTH FACTOR-BETA- COMPND 7 ACTIVATED KINASE 1, TGF-BETA-ACTIVATED KINASE 1, MITOGEN-ACTIVATED COMPND 8 PROTEIN KINASE KINASE KINASE 7-INTERACTING PROTEIN 1, TGF-BETA- COMPND 9 ACTIVATED KINASE 1-BINDING PROTEIN 1, TAK1-BINDING PROTEIN 1; COMPND 10 EC: 2.7.11.25; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAP3K7, TAK1, MAP3K7IP1, TAB1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS TAK1 KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG,K.R.HORNBERGER,A.P.CREW,A.JESTEL,K.MASKOS,M.MOERTL REVDAT 5 15-NOV-17 4L52 1 REMARK REVDAT 4 26-JUL-17 4L52 1 SOURCE REMARK REVDAT 3 07-AUG-13 4L52 1 JRNL REVDAT 2 31-JUL-13 4L52 1 JRNL REVDAT 1 03-JUL-13 4L52 0 JRNL AUTH K.R.HORNBERGER,D.M.BERGER,A.P.CREW,H.DONG,A.KLEINBERG, JRNL AUTH 2 A.H.LI,M.R.MEDEIROS,M.J.MULVIHILL,K.SIU,J.TARRANT,J.WANG, JRNL AUTH 3 F.WENG,V.L.WILDE,M.ALBERTELLA,M.BITTNER,A.COOKE,M.J.GRAY, JRNL AUTH 4 P.MARESCA,E.MAY,P.MEYN,W.PEICK,D.ROMASHKO,M.TANOWITZ,B.TOKAR JRNL TITL DISCOVERY AND OPTIMIZATION OF 7-AMINOFURO[2,3-C]PYRIDINE JRNL TITL 2 INHIBITORS OF TAK1. JRNL REF BIOORG.MED.CHEM.LETT. V. 23 4517 2013 JRNL REFN ISSN 0960-894X JRNL PMID 23850198 JRNL DOI 10.1016/J.BMCL.2013.06.053 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 97.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 16952 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.800 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.32000 REMARK 3 B22 (A**2) : -2.52000 REMARK 3 B33 (A**2) : 7.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.168 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2380 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2101 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3250 ; 1.422 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4857 ; 0.797 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 6.544 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;34.630 ;23.061 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;16.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;18.913 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2674 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 494 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 524 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2090 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1194 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1232 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 49 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.089 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 40 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.015 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1884 ; 2.438 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 594 ; 0.434 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2378 ; 2.994 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1103 ; 4.461 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 6.204 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 106 REMARK 3 ORIGIN FOR THE GROUP (A): -8.585 -50.504 -8.096 REMARK 3 T TENSOR REMARK 3 T11: 0.5247 T22: 0.4422 REMARK 3 T33: 0.2092 T12: -0.0361 REMARK 3 T13: 0.0073 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 3.7779 L22: 7.3677 REMARK 3 L33: 6.5293 L12: 4.0625 REMARK 3 L13: -1.5515 L23: -5.8721 REMARK 3 S TENSOR REMARK 3 S11: 0.4772 S12: -0.8134 S13: -0.3739 REMARK 3 S21: 1.1196 S22: -0.0305 S23: -0.0175 REMARK 3 S31: 0.2322 S32: -0.3257 S33: -0.4466 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 107 A 496 REMARK 3 ORIGIN FOR THE GROUP (A): -6.238 -44.247 -33.602 REMARK 3 T TENSOR REMARK 3 T11: -0.1167 T22: -0.0982 REMARK 3 T33: -0.1613 T12: -0.0189 REMARK 3 T13: -0.0041 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 3.5654 L22: 3.7535 REMARK 3 L33: 2.1241 L12: -0.8899 REMARK 3 L13: -0.2047 L23: -0.2281 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: -0.0080 S13: -0.3720 REMARK 3 S21: -0.0312 S22: 0.0561 S23: -0.0339 REMARK 3 S31: 0.2111 S32: -0.0395 S33: -0.0107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18760 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 97.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75 M SODIUM CITRATE, 0.2 M SODIUM REMARK 280 CHLORIDE, 0.1 M TRIS, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.08000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.89200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.11850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.08000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.89200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.11850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.08000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.89200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.11850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.08000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.89200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.11850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 179 REMARK 465 CYS A 180 REMARK 465 ASP A 181 REMARK 465 ILE A 182 REMARK 465 GLN A 183 REMARK 465 THR A 184 REMARK 465 HIS A 185 REMARK 465 MET A 186 REMARK 465 THR A 187 REMARK 465 ASN A 188 REMARK 465 ASN A 189 REMARK 465 LYS A 190 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 28 CG CD1 CD2 REMARK 480 LYS A 34 CG CD CE NZ REMARK 480 GLU A 35 CG CD OE1 OE2 REMARK 480 GLU A 37 CG CD OE1 OE2 REMARK 480 LYS A 54 CD CE NZ REMARK 480 LYS A 58 CD CE NZ REMARK 480 ILE A 65 CD1 REMARK 480 GLU A 68 CG CD OE1 OE2 REMARK 480 ARG A 71 CD NE CZ NH1 NH2 REMARK 480 LYS A 72 CG CD CE NZ REMARK 480 LEU A 78 CD1 CD2 REMARK 480 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 91 CG CD CE NZ REMARK 480 LEU A 92 CD1 CD2 REMARK 480 LEU A 97 CG CD1 CD2 REMARK 480 ASN A 98 CG OD1 ND2 REMARK 480 LEU A 102 CD1 CD2 REMARK 480 LYS A 150 CG CD CE NZ REMARK 480 GLU A 231 CG CD OE1 OE2 REMARK 480 LYS A 253 CD CE NZ REMARK 480 LYS A 257 CD CE NZ REMARK 480 LYS A 269 CE NZ REMARK 480 LEU A 470 CG CD1 CD2 REMARK 480 GLU A 474 CG CD OE1 OE2 REMARK 480 ASP A 475 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LEU A 102 CG LEU A 102 CD1 -0.243 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 39 -159.83 -137.11 REMARK 500 TRP A 55 114.13 -160.16 REMARK 500 ASN A 85 106.16 -172.20 REMARK 500 ASN A 98 -70.49 -51.26 REMARK 500 ARG A 155 -19.36 79.45 REMARK 500 ARG A 155 -28.97 80.85 REMARK 500 ASP A 475 -28.42 130.03 REMARK 500 HIS A 495 -115.91 -112.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 98 PRO A 99 135.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1UL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L3P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 2-(1-BENZOTHIOPHEN-7-YL)-4-[1-(PIPERIDIN-4-YL)- REMARK 900 1H-PYRAZOL-4-YL]FURO[2,3-C]PYRIDIN-7-AMINE BOUND TO TAK1-TAB1 REMARK 900 RELATED ID: 4L53 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (1R,4R)-4-{4-[7-AMINO-2-(1,2,3-BENZOTHIADIAZOL- REMARK 900 7-YL)-3-CHLOROFURO[2,3-C]PYRIDIN-4-YL]-1H-PYRAZOL-1-YL}CYCLOHEXAN-1- REMARK 900 OL BOUND TO TAK1-TAB1 REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN IS A CHIMERA COMPRISING THE KINASE DOMAIN OF TAK1 (UNP REMARK 999 O43318 RESIDUES 31-303) AND RESIDUES 468-496 OF TAB1 (UNP Q15750). DBREF 4L52 A 31 303 UNP O43318 M3K7_HUMAN 31 303 DBREF 4L52 A 468 496 UNP Q15750 TAB1_HUMAN 468 496 SEQADV 4L52 GLY A 26 UNP O43318 EXPRESSION TAG SEQADV 4L52 SER A 27 UNP O43318 EXPRESSION TAG SEQADV 4L52 LEU A 28 UNP O43318 EXPRESSION TAG SEQADV 4L52 HIS A 29 UNP O43318 EXPRESSION TAG SEQADV 4L52 MET A 30 UNP O43318 EXPRESSION TAG SEQRES 1 A 307 GLY SER LEU HIS MET ILE ASP TYR LYS GLU ILE GLU VAL SEQRES 2 A 307 GLU GLU VAL VAL GLY ARG GLY ALA PHE GLY VAL VAL CYS SEQRES 3 A 307 LYS ALA LYS TRP ARG ALA LYS ASP VAL ALA ILE LYS GLN SEQRES 4 A 307 ILE GLU SER GLU SER GLU ARG LYS ALA PHE ILE VAL GLU SEQRES 5 A 307 LEU ARG GLN LEU SER ARG VAL ASN HIS PRO ASN ILE VAL SEQRES 6 A 307 LYS LEU TYR GLY ALA CYS LEU ASN PRO VAL CYS LEU VAL SEQRES 7 A 307 MET GLU TYR ALA GLU GLY GLY SER LEU TYR ASN VAL LEU SEQRES 8 A 307 HIS GLY ALA GLU PRO LEU PRO TYR TYR THR ALA ALA HIS SEQRES 9 A 307 ALA MET SER TRP CYS LEU GLN CYS SER GLN GLY VAL ALA SEQRES 10 A 307 TYR LEU HIS SER MET GLN PRO LYS ALA LEU ILE HIS ARG SEQRES 11 A 307 ASP LEU LYS PRO PRO ASN LEU LEU LEU VAL ALA GLY GLY SEQRES 12 A 307 THR VAL LEU LYS ILE CYS ASP PHE GLY THR ALA CYS ASP SEQRES 13 A 307 ILE GLN THR HIS MET THR ASN ASN LYS GLY SER ALA ALA SEQRES 14 A 307 TRP MET ALA PRO GLU VAL PHE GLU GLY SER ASN TYR SER SEQRES 15 A 307 GLU LYS CYS ASP VAL PHE SER TRP GLY ILE ILE LEU TRP SEQRES 16 A 307 GLU VAL ILE THR ARG ARG LYS PRO PHE ASP GLU ILE GLY SEQRES 17 A 307 GLY PRO ALA PHE ARG ILE MET TRP ALA VAL HIS ASN GLY SEQRES 18 A 307 THR ARG PRO PRO LEU ILE LYS ASN LEU PRO LYS PRO ILE SEQRES 19 A 307 GLU SER LEU MET THR ARG CYS TRP SER LYS ASP PRO SER SEQRES 20 A 307 GLN ARG PRO SER MET GLU GLU ILE VAL LYS ILE MET THR SEQRES 21 A 307 HIS LEU MET ARG TYR PHE PRO GLY ALA ASP GLU PRO LEU SEQRES 22 A 307 GLN TYR PRO CYS GLN HIS SER LEU PRO PRO GLY GLU ASP SEQRES 23 A 307 GLY ARG VAL GLU PRO TYR VAL ASP PHE ALA GLU PHE TYR SEQRES 24 A 307 ARG LEU TRP SER VAL ASP HIS GLY HET 1UL A 501 33 HETNAM 1UL 1-(4-{4-[7-AMINO-2-(1,2,3-BENZOTHIADIAZOL-7-YL)FURO[2, HETNAM 2 1UL 3-C]PYRIDIN-4-YL]-1H-PYRAZOL-1-YL}PIPERIDIN-1-YL) HETNAM 3 1UL ETHANONE FORMUL 2 1UL C23 H21 N7 O2 S FORMUL 3 HOH *35(H2 O) HELIX 1 1 ASP A 32 LYS A 34 5 3 HELIX 2 2 SER A 67 SER A 69 5 3 HELIX 3 3 GLU A 70 SER A 82 1 13 HELIX 4 4 LEU A 112 GLY A 118 1 7 HELIX 5 5 THR A 126 MET A 147 1 22 HELIX 6 6 LYS A 158 PRO A 160 5 3 HELIX 7 7 SER A 192 MET A 196 5 5 HELIX 8 8 ALA A 197 GLU A 202 1 6 HELIX 9 9 GLU A 208 ARG A 225 1 18 HELIX 10 10 PRO A 235 ASN A 245 1 11 HELIX 11 11 PRO A 256 TRP A 267 1 12 HELIX 12 12 ASP A 270 ARG A 274 5 5 HELIX 13 13 SER A 276 MET A 288 1 13 HELIX 14 14 ARG A 289 PHE A 291 5 3 HELIX 15 15 PHE A 484 HIS A 495 1 12 SHEET 1 A 5 ILE A 36 GLY A 43 0 SHEET 2 A 5 VAL A 49 TRP A 55 -1 O VAL A 50 N GLY A 43 SHEET 3 A 5 LYS A 58 GLN A 64 -1 O ILE A 62 N CYS A 51 SHEET 4 A 5 CYS A 101 GLU A 105 -1 O MET A 104 N ALA A 61 SHEET 5 A 5 LEU A 92 CYS A 96 -1 N GLY A 94 O VAL A 103 SHEET 1 B 3 GLY A 110 SER A 111 0 SHEET 2 B 3 LEU A 162 VAL A 165 -1 O LEU A 164 N GLY A 110 SHEET 3 B 3 VAL A 170 ILE A 173 -1 O LYS A 172 N LEU A 163 SHEET 1 C 2 LEU A 122 PRO A 123 0 SHEET 2 C 2 PRO A 301 CYS A 302 -1 O CYS A 302 N LEU A 122 SHEET 1 D 2 LEU A 251 ILE A 252 0 SHEET 2 D 2 ARG A 477 VAL A 478 1 O VAL A 478 N LEU A 251 SSBOND 1 CYS A 96 CYS A 101 1555 1555 2.71 CISPEP 1 GLU A 120 PRO A 121 0 5.10 CISPEP 2 GLN A 148 PRO A 149 0 -4.62 SITE 1 AC1 10 VAL A 42 ALA A 61 MET A 104 GLU A 105 SITE 2 AC1 10 TYR A 106 ALA A 107 GLU A 108 LEU A 163 SITE 3 AC1 10 CYS A 174 ASP A 175 CRYST1 58.160 133.784 142.237 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017194 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007031 0.00000 MASTER 413 0 1 15 12 0 3 6 0 0 0 24 END