HEADER DNA 24-MAY-13 4KWX TITLE LINEAR STRUCTURE OF THE HOLLIDAY JUNCTION SEQUENCE (TCGGCGCCGA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3'; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: HOLLIDAY JUNCTION SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS LINEAR DNA, PALINDROME SEQUENCE, DNA EXPDTA X-RAY DIFFRACTION AUTHOR G.SKAMROVA,I.LAPONOGOV,N.CAMPBELL,S.NEIDLE REVDAT 2 15-NOV-17 4KWX 1 REMARK REVDAT 1 26-NOV-14 4KWX 0 JRNL AUTH G.SKAMROVA,I.LAPONOGOV,N.CAMPBELL,S.NEIDLE JRNL TITL LINEAR STRUCTURE OF THE HOLLIDAY JUNCTION SEQUENCE JRNL TITL 2 (TCGGCGCCGA) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 31546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3092 - 2.8906 0.88 2690 153 0.1542 0.1546 REMARK 3 2 2.8906 - 2.2945 0.91 2817 141 0.1998 0.1951 REMARK 3 3 2.2945 - 2.0045 0.90 2782 171 0.1833 0.1944 REMARK 3 4 2.0045 - 1.8213 0.89 2727 138 0.1623 0.1854 REMARK 3 5 1.8213 - 1.6907 0.86 2655 158 0.1531 0.1917 REMARK 3 6 1.6907 - 1.5910 0.87 2685 148 0.1639 0.2045 REMARK 3 7 1.5910 - 1.5114 0.87 2679 141 0.1817 0.2139 REMARK 3 8 1.5114 - 1.4456 0.87 2722 127 0.1959 0.2331 REMARK 3 9 1.4456 - 1.3899 0.88 2702 138 0.1977 0.2613 REMARK 3 10 1.3899 - 1.3420 0.88 2794 116 0.2076 0.2599 REMARK 3 11 1.3420 - 1.3000 0.88 2723 139 0.2159 0.2688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1408 REMARK 3 ANGLE : 1.263 2206 REMARK 3 CHIRALITY : 0.068 232 REMARK 3 PLANARITY : 0.008 60 REMARK 3 DIHEDRAL : 33.311 570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KWX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : XIA2, SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 32.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 200 DATA REDUNDANCY : 1.770 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 1.74 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.75-1.5 MM DNA, 40-60% MPD, MAGNESIUM REMARK 280 CHLORIDE, POTASSIUM CHLORIDE, SODIUM CACODYLATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT A 1 O5' C5' REMARK 470 DT E 1 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 254 O HOH F 204 1.56 REMARK 500 O HOH B 233 O HOH D 237 1.82 REMARK 500 O HOH C 127 O HOH D 242 1.85 REMARK 500 O HOH A 253 O HOH C 109 1.90 REMARK 500 O HOH A 244 O HOH B 221 1.91 REMARK 500 O HOH C 126 O HOH C 127 1.92 REMARK 500 O HOH A 229 O HOH A 245 1.96 REMARK 500 O HOH A 252 O HOH B 231 1.97 REMARK 500 O HOH E 260 O HOH F 207 1.97 REMARK 500 O HOH F 207 O HOH F 236 1.98 REMARK 500 O HOH A 242 O HOH B 230 2.02 REMARK 500 OP1 DC F 7 O HOH F 221 2.02 REMARK 500 O HOH E 243 O HOH F 231 2.03 REMARK 500 O HOH C 109 O HOH C 116 2.03 REMARK 500 O HOH A 225 O HOH F 204 2.08 REMARK 500 O HOH A 245 O HOH B 236 2.10 REMARK 500 O HOH F 207 O HOH F 230 2.12 REMARK 500 O HOH B 233 O HOH D 248 2.13 REMARK 500 O HOH C 115 O HOH D 235 2.14 REMARK 500 O HOH C 107 O HOH C 109 2.14 REMARK 500 O HOH E 224 O HOH F 231 2.14 REMARK 500 O HOH C 104 O HOH C 115 2.15 REMARK 500 O HOH A 221 O HOH C 109 2.17 REMARK 500 O HOH E 232 O HOH F 207 2.19 REMARK 500 O HOH C 106 O HOH C 115 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 232 O HOH E 235 1444 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC E 5 OP2 REMARK 620 2 HOH E 209 O 179.3 REMARK 620 3 HOH E 210 O 91.7 88.8 REMARK 620 4 HOH E 206 O 91.7 88.8 90.8 REMARK 620 5 HOH E 207 O 89.4 90.0 88.4 178.6 REMARK 620 6 HOH E 208 O 88.8 90.7 179.3 89.6 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 5 OP2 REMARK 620 2 HOH A 206 O 174.7 REMARK 620 3 HOH A 207 O 89.0 91.8 REMARK 620 4 HOH D 207 O 89.9 89.2 177.6 REMARK 620 5 HOH B 205 O 87.7 87.1 88.1 89.8 REMARK 620 6 HOH D 206 O 94.4 90.8 93.4 88.8 177.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 5 OP2 REMARK 620 2 HOH E 205 O 176.6 REMARK 620 3 HOH E 201 O 93.0 90.2 REMARK 620 4 HOH A 205 O 92.4 86.6 89.8 REMARK 620 5 HOH E 204 O 89.1 91.8 92.1 177.5 REMARK 620 6 HOH A 255 O 86.2 90.5 177.4 87.7 90.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC D 2 OP2 REMARK 620 2 HOH D 204 O 93.8 REMARK 620 3 HOH D 201 O 172.8 89.4 REMARK 620 4 HOH D 202 O 96.9 88.4 89.6 REMARK 620 5 HOH D 205 O 81.0 92.2 92.5 177.9 REMARK 620 6 HOH D 203 O 85.4 178.5 91.5 90.4 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 204 O REMARK 620 2 HOH A 204 O 89.8 REMARK 620 3 HOH A 203 O 177.4 88.1 REMARK 620 4 HOH B 203 O 90.3 90.0 91.1 REMARK 620 5 HOH E 203 O 88.9 176.9 93.3 87.2 REMARK 620 6 HOH E 202 O 88.6 88.6 89.9 178.3 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E 221 O REMARK 620 2 HOH E 222 O 92.7 REMARK 620 3 HOH E 219 O 87.9 177.7 REMARK 620 4 HOH E 217 O 87.5 85.8 92.1 REMARK 620 5 HOH E 218 O 96.9 94.3 87.8 175.6 REMARK 620 6 HOH E 220 O 173.2 89.1 90.0 86.1 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E 215 O REMARK 620 2 HOH B 206 O 173.4 REMARK 620 3 HOH D 208 O 86.2 89.0 REMARK 620 4 HOH B 208 O 89.6 95.2 175.8 REMARK 620 5 HOH B 207 O 85.3 90.1 89.7 90.5 REMARK 620 6 HOH D 209 O 96.6 88.0 90.0 90.0 178.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH C 101 O REMARK 620 2 HOH C 102 O 90.1 REMARK 620 3 HOH A 202 O 87.3 175.0 REMARK 620 4 HOH B 201 O 175.9 90.1 92.8 REMARK 620 5 HOH A 201 O 94.8 88.5 87.5 89.3 REMARK 620 6 HOH B 202 O 89.1 94.9 89.3 86.8 174.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F 208 O REMARK 620 2 HOH E 214 O 177.1 REMARK 620 3 HOH E 213 O 87.7 94.8 REMARK 620 4 HOH E 211 O 90.4 91.0 87.8 REMARK 620 5 HOH F 209 O 88.6 88.9 176.3 91.6 REMARK 620 6 HOH E 212 O 92.5 86.4 88.2 175.0 92.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG F 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH F 211 O REMARK 620 2 HOH A 208 O 90.7 REMARK 620 3 HOH F 210 O 92.0 89.6 REMARK 620 4 HOH F 213 O 179.0 89.8 87.2 REMARK 620 5 HOH E 216 O 89.3 87.8 177.1 91.5 REMARK 620 6 HOH F 212 O 88.1 178.9 90.5 91.4 92.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG F 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GOO RELATED DB: PDB REMARK 900 STRONTIUM BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGCGCCGA)4 REMARK 900 RELATED ID: 3GNK RELATED DB: PDB REMARK 900 CALCIUM BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGCGCCGA)4 REMARK 900 RELATED ID: 3GOM RELATED DB: PDB REMARK 900 BARIUM BOUND TO THE HOLLIDAY JUNCTION SEQUENCE D(TCGGCGCCGA)4 DBREF 4KWX A 1 10 PDB 4KWX 4KWX 1 10 DBREF 4KWX B 1 10 PDB 4KWX 4KWX 1 10 DBREF 4KWX C 1 10 PDB 4KWX 4KWX 1 10 DBREF 4KWX D 1 10 PDB 4KWX 4KWX 1 10 DBREF 4KWX E 1 10 PDB 4KWX 4KWX 1 10 DBREF 4KWX F 1 10 PDB 4KWX 4KWX 1 10 SEQRES 1 A 10 DT DC DG DG DC DG DC DC DG DA SEQRES 1 B 10 DT DC DG DG DC DG DC DC DG DA SEQRES 1 C 10 DT DC DG DG DC DG DC DC DG DA SEQRES 1 D 10 DT DC DG DG DC DG DC DC DG DA SEQRES 1 E 10 DT DC DG DG DC DG DC DC DG DA SEQRES 1 F 10 DT DC DG DG DC DG DC DC DG DA HET MG A 101 1 HET MG A 102 1 HET MG B 101 1 HET MG D 101 1 HET MG D 102 1 HET MG E 101 1 HET MG E 102 1 HET MG E 103 1 HET MG F 101 1 HET MG F 102 1 HETNAM MG MAGNESIUM ION FORMUL 7 MG 10(MG 2+) FORMUL 17 HOH *285(H2 O) LINK OP2 DC E 5 MG MG E 102 1555 1555 2.00 LINK OP2 DC D 5 MG MG D 102 1555 1555 2.01 LINK OP2 DC A 5 MG MG A 102 1555 1555 2.04 LINK OP2 DC D 2 MG MG D 101 1555 1555 2.11 LINK MG MG E 101 O HOH B 204 1555 1555 2.10 LINK MG MG A 102 O HOH E 205 1555 1555 2.13 LINK MG MG D 102 O HOH A 206 1555 1555 2.13 LINK MG MG E 103 O HOH E 221 1555 1555 2.14 LINK MG MG B 101 O HOH E 215 1555 1555 2.14 LINK MG MG E 101 O HOH A 204 1555 1555 2.14 LINK MG MG A 101 O HOH C 101 1555 1555 2.14 LINK MG MG D 102 O HOH A 207 1555 1555 2.14 LINK MG MG F 101 O HOH F 208 1555 1555 2.14 LINK MG MG E 103 O HOH E 222 1555 1555 2.14 LINK MG MG A 101 O HOH C 102 1555 1555 2.14 LINK MG MG E 102 O HOH E 209 1555 1555 2.14 LINK MG MG E 102 O HOH E 210 1555 1555 2.14 LINK MG MG F 101 O HOH E 214 1555 1555 2.15 LINK MG MG E 102 O HOH E 206 1555 1555 2.15 LINK MG MG A 101 O HOH A 202 1555 1555 2.15 LINK MG MG D 102 O HOH D 207 1555 1555 2.15 LINK MG MG E 103 O HOH E 219 1555 1555 2.15 LINK MG MG A 101 O HOH B 201 1555 1555 2.15 LINK MG MG A 102 O HOH E 201 1555 1555 2.15 LINK MG MG A 102 O HOH A 205 1555 1555 2.15 LINK MG MG F 101 O HOH E 213 1555 1555 2.15 LINK MG MG E 103 O HOH E 217 1555 1555 2.15 LINK MG MG E 101 O HOH A 203 1555 1555 2.15 LINK MG MG E 101 O HOH B 203 1555 1555 2.15 LINK MG MG D 102 O HOH B 205 1555 1555 2.16 LINK MG MG A 102 O HOH E 204 1555 1555 2.16 LINK MG MG F 101 O HOH E 211 1555 1555 2.16 LINK MG MG E 101 O HOH E 203 1555 1555 2.16 LINK MG MG E 102 O HOH E 207 1555 1555 2.16 LINK MG MG E 103 O HOH E 218 1555 1555 2.16 LINK MG MG B 101 O HOH B 206 1555 1555 2.16 LINK MG MG E 103 O HOH E 220 1555 1555 2.16 LINK MG MG B 101 O HOH D 208 1555 1555 2.16 LINK MG MG B 101 O HOH B 208 1555 1555 2.16 LINK MG MG D 102 O HOH D 206 1555 1555 2.16 LINK MG MG D 101 O HOH D 204 1555 1555 2.16 LINK MG MG A 101 O HOH A 201 1555 1555 2.16 LINK MG MG F 101 O HOH F 209 1555 1555 2.16 LINK MG MG D 101 O HOH D 201 1555 1555 2.17 LINK MG MG D 101 O HOH D 202 1555 1555 2.17 LINK MG MG F 101 O HOH E 212 1555 1555 2.17 LINK MG MG E 101 O HOH E 202 1555 1555 2.17 LINK MG MG D 101 O HOH D 205 1555 1555 2.17 LINK MG MG F 102 O HOH F 211 1555 1555 2.17 LINK MG MG A 102 O HOH A 255 1555 1555 2.17 LINK MG MG F 102 O HOH A 208 1555 1555 2.17 LINK MG MG E 102 O HOH E 208 1555 1555 2.17 LINK MG MG F 102 O HOH F 210 1555 1555 2.17 LINK MG MG B 101 O HOH B 207 1555 1555 2.17 LINK MG MG F 102 O HOH F 213 1555 1555 2.17 LINK MG MG A 101 O HOH B 202 1555 1555 2.18 LINK MG MG F 102 O HOH E 216 1555 1555 2.18 LINK MG MG F 102 O HOH F 212 1555 1555 2.18 LINK MG MG D 101 O HOH D 203 1555 1555 2.18 LINK MG MG B 101 O HOH D 209 1555 1555 2.18 SITE 1 AC1 6 HOH A 201 HOH A 202 HOH B 201 HOH B 202 SITE 2 AC1 6 HOH C 101 HOH C 102 SITE 1 AC2 6 DC A 5 HOH A 205 HOH A 255 HOH E 201 SITE 2 AC2 6 HOH E 204 HOH E 205 SITE 1 AC3 6 HOH B 206 HOH B 207 HOH B 208 HOH D 208 SITE 2 AC3 6 HOH D 209 HOH E 215 SITE 1 AC4 6 DC D 2 HOH D 201 HOH D 202 HOH D 203 SITE 2 AC4 6 HOH D 204 HOH D 205 SITE 1 AC5 6 HOH A 206 HOH A 207 HOH B 205 DC D 5 SITE 2 AC5 6 HOH D 206 HOH D 207 SITE 1 AC6 6 HOH A 203 HOH A 204 HOH B 203 HOH B 204 SITE 2 AC6 6 HOH E 202 HOH E 203 SITE 1 AC7 6 DC E 5 HOH E 206 HOH E 207 HOH E 208 SITE 2 AC7 6 HOH E 209 HOH E 210 SITE 1 AC8 6 HOH E 217 HOH E 218 HOH E 219 HOH E 220 SITE 2 AC8 6 HOH E 221 HOH E 222 SITE 1 AC9 6 HOH E 211 HOH E 212 HOH E 213 HOH E 214 SITE 2 AC9 6 HOH F 208 HOH F 209 SITE 1 BC1 6 HOH A 208 HOH E 216 HOH F 210 HOH F 211 SITE 2 BC1 6 HOH F 212 HOH F 213 CRYST1 34.410 34.490 34.690 101.28 103.21 103.81 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029061 0.007144 0.009034 0.00000 SCALE2 0.000000 0.029857 0.008192 0.00000 SCALE3 0.000000 0.000000 0.030705 0.00000 MASTER 439 0 10 0 0 0 20 6 0 0 0 6 END