HEADER HYDROLASE 17-MAY-13 4KSJ TITLE CRYSTAL STRUCTURE OF THE OTU DOMAIN OF GUMBY/FAM105B AT 1.6 ANGSTROM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FAM105B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OTU DOMAIN (UNP RESIDUES 79-352); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAM105B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PROEX KEYWDS OTU DOMAIN, DEUBIQUITINASE, UBIQUITIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.F.CECCARELLI,Y.-C.JUANG,F.SICHERI REVDAT 3 18-APR-18 4KSJ 1 JRNL REVDAT 2 12-NOV-14 4KSJ 1 AUTHOR REVDAT 1 05-JUN-13 4KSJ 0 JRNL AUTH E.RIVKIN,S.M.ALMEIDA,D.F.CECCARELLI,Y.C.JUANG,T.A.MACLEAN, JRNL AUTH 2 T.SRIKUMAR,H.HUANG,W.H.DUNHAM,R.FUKUMURA,G.XIE,Y.GONDO, JRNL AUTH 3 B.RAUGHT,A.C.GINGRAS,F.SICHERI,S.P.CORDES JRNL TITL THE LINEAR UBIQUITIN-SPECIFIC DEUBIQUITINASE GUMBY REGULATES JRNL TITL 2 ANGIOGENESIS. JRNL REF NATURE V. 498 318 2013 JRNL REFN ESSN 1476-4687 JRNL PMID 23708998 JRNL DOI 10.1038/NATURE12296 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2073 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.086 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2922 ; 2.201 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 5.572 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;31.680 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 366 ;13.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.116 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1623 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1304 ; 1.544 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2101 ; 2.575 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 848 ; 3.789 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 818 ; 5.697 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36961 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.376 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES, 200MM MGCL2, 19% PEG3350, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 77 REMARK 465 GLY A 174 REMARK 465 LEU A 175 REMARK 465 LYS A 176 REMARK 465 PHE A 177 REMARK 465 ASP A 178 REMARK 465 GLY A 179 REMARK 465 LYS A 180 REMARK 465 ASN A 181 REMARK 465 GLU A 182 REMARK 465 VAL A 346 REMARK 465 CYS A 347 REMARK 465 GLU A 348 REMARK 465 GLU A 349 REMARK 465 THR A 350 REMARK 465 SER A 351 REMARK 465 LEU A 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 212 CG CD OE1 NE2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 338 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 511 O HOH A 638 2.01 REMARK 500 O HOH A 581 O HOH A 608 2.03 REMARK 500 NE2 GLN A 288 OH TYR A 319 2.06 REMARK 500 O SER A 163 O HOH A 511 2.09 REMARK 500 SG CYS A 92 S2 BME A 401 2.10 REMARK 500 O HOH A 511 O HOH A 564 2.13 REMARK 500 O HOH A 511 O HOH A 616 2.15 REMARK 500 O HOH A 685 O HOH A 716 2.18 REMARK 500 O HOH A 511 O HOH A 670 2.19 REMARK 500 O HOH A 600 O HOH A 692 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 129 CB CYS A 129 SG -0.146 REMARK 500 CYS A 215 CB CYS A 215 SG -0.097 REMARK 500 TYR A 226 CD1 TYR A 226 CE1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 219 72.39 -105.95 REMARK 500 SER A 266 42.15 -142.23 REMARK 500 HIS A 276 -65.26 -125.40 REMARK 500 HIS A 282 -58.16 -123.82 REMARK 500 ASP A 337 -1.41 61.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KSK RELATED DB: PDB REMARK 900 RELATED ID: 4KSL RELATED DB: PDB DBREF 4KSJ A 79 352 UNP Q96BN8 F105B_HUMAN 79 352 SEQADV 4KSJ GLY A 77 UNP Q96BN8 EXPRESSION TAG SEQADV 4KSJ SER A 78 UNP Q96BN8 EXPRESSION TAG SEQRES 1 A 276 GLY SER ARG LEU SER VAL ALA PRO GLU MSE ASP ILE MSE SEQRES 2 A 276 ASP TYR CYS LYS LYS GLU TRP ARG GLY ASN THR GLN LYS SEQRES 3 A 276 ALA THR CYS MSE LYS MSE GLY TYR GLU GLU VAL SER GLN SEQRES 4 A 276 LYS PHE THR SER ILE ARG ARG VAL ARG GLY ASP ASN TYR SEQRES 5 A 276 CYS ALA LEU ARG ALA THR LEU PHE GLN ALA MSE SER GLN SEQRES 6 A 276 ALA VAL GLY LEU PRO PRO TRP LEU GLN ASP PRO GLU LEU SEQRES 7 A 276 MSE LEU LEU PRO GLU LYS LEU ILE SER LYS TYR ASN TRP SEQRES 8 A 276 ILE LYS GLN TRP LYS LEU GLY LEU LYS PHE ASP GLY LYS SEQRES 9 A 276 ASN GLU ASP LEU VAL ASP LYS ILE LYS GLU SER LEU THR SEQRES 10 A 276 LEU LEU ARG LYS LYS TRP ALA GLY LEU ALA GLU MSE ARG SEQRES 11 A 276 THR ALA GLU ALA ARG GLN ILE ALA CYS ASP GLU LEU PHE SEQRES 12 A 276 THR ASN GLU ALA GLU GLU TYR SER LEU TYR GLU ALA VAL SEQRES 13 A 276 LYS PHE LEU MSE LEU ASN ARG ALA ILE GLU LEU TYR ASN SEQRES 14 A 276 ASP LYS GLU LYS GLY LYS GLU VAL PRO PHE PHE SER VAL SEQRES 15 A 276 LEU LEU PHE ALA ARG ASP THR SER ASN ASP PRO GLY GLN SEQRES 16 A 276 LEU LEU ARG ASN HIS LEU ASN GLN VAL GLY HIS THR GLY SEQRES 17 A 276 GLY LEU GLU GLN VAL GLU MSE PHE LEU LEU ALA TYR ALA SEQRES 18 A 276 VAL ARG HIS THR ILE GLN VAL TYR ARG LEU SER LYS TYR SEQRES 19 A 276 ASN THR GLU GLU PHE ILE THR VAL TYR PRO THR ASP PRO SEQRES 20 A 276 PRO LYS ASP TRP PRO VAL VAL THR LEU ILE ALA GLU ASP SEQRES 21 A 276 ASP ARG HIS TYR ASN ILE PRO VAL ARG VAL CYS GLU GLU SEQRES 22 A 276 THR SER LEU MODRES 4KSJ MSE A 86 MET SELENOMETHIONINE MODRES 4KSJ MSE A 89 MET SELENOMETHIONINE MODRES 4KSJ MSE A 106 MET SELENOMETHIONINE MODRES 4KSJ MSE A 108 MET SELENOMETHIONINE MODRES 4KSJ MSE A 139 MET SELENOMETHIONINE MODRES 4KSJ MSE A 155 MET SELENOMETHIONINE MODRES 4KSJ MSE A 205 MET SELENOMETHIONINE MODRES 4KSJ MSE A 236 MET SELENOMETHIONINE MODRES 4KSJ MSE A 291 MET SELENOMETHIONINE HET MSE A 86 8 HET MSE A 89 8 HET MSE A 106 8 HET MSE A 108 8 HET MSE A 139 8 HET MSE A 155 8 HET MSE A 205 8 HET MSE A 236 8 HET MSE A 291 8 HET BME A 401 4 HET GOL A 402 6 HET GOL A 403 6 HETNAM MSE SELENOMETHIONINE HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 BME C2 H6 O S FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *222(H2 O) HELIX 1 1 ILE A 88 TRP A 96 1 9 HELIX 2 2 THR A 100 GLN A 115 1 16 HELIX 3 3 TYR A 128 GLN A 141 1 14 HELIX 4 4 PRO A 146 ASP A 151 1 6 HELIX 5 5 PRO A 152 TYR A 165 1 14 HELIX 6 6 ASN A 166 TRP A 171 5 6 HELIX 7 7 LEU A 184 GLU A 204 1 21 HELIX 8 8 THR A 207 PHE A 219 1 13 HELIX 9 9 GLU A 222 LYS A 249 1 28 HELIX 10 10 PRO A 254 ARG A 263 1 10 HELIX 11 11 ASP A 268 HIS A 276 1 9 HELIX 12 12 LEU A 277 VAL A 280 5 4 HELIX 13 13 GLU A 287 ARG A 299 1 13 HELIX 14 14 SER A 308 TYR A 310 5 3 HELIX 15 15 THR A 312 GLU A 314 5 3 SHEET 1 A 6 MSE A 86 ASP A 87 0 SHEET 2 A 6 SER A 119 ARG A 121 -1 O ILE A 120 N MSE A 86 SHEET 3 A 6 TYR A 340 VAL A 344 -1 O VAL A 344 N SER A 119 SHEET 4 A 6 VAL A 329 ALA A 334 -1 N ILE A 333 O ASN A 341 SHEET 5 A 6 THR A 301 ARG A 306 1 N TYR A 305 O ALA A 334 SHEET 6 A 6 ILE A 316 TYR A 319 -1 O TYR A 319 N ILE A 302 LINK C GLU A 85 N MSE A 86 1555 1555 1.31 LINK C MSE A 86 N ASP A 87 1555 1555 1.35 LINK C ILE A 88 N MSE A 89 1555 1555 1.34 LINK C MSE A 89 N ASP A 90 1555 1555 1.32 LINK C CYS A 105 N MSE A 106 1555 1555 1.36 LINK C MSE A 106 N LYS A 107 1555 1555 1.33 LINK C LYS A 107 N MSE A 108 1555 1555 1.33 LINK C MSE A 108 N GLY A 109 1555 1555 1.33 LINK C ALA A 138 N MSE A 139 1555 1555 1.34 LINK C MSE A 139 N SER A 140 1555 1555 1.34 LINK C LEU A 154 N MSE A 155 1555 1555 1.32 LINK C MSE A 155 N LEU A 156 1555 1555 1.34 LINK C GLU A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N ARG A 206 1555 1555 1.33 LINK C LEU A 235 N MSE A 236 1555 1555 1.33 LINK C MSE A 236 N LEU A 237 1555 1555 1.33 LINK C GLU A 290 N MSE A 291 1555 1555 1.35 LINK C MSE A 291 N PHE A 292 1555 1555 1.34 CISPEP 1 TYR A 319 PRO A 320 0 -9.50 SITE 1 AC1 4 CYS A 92 LYS A 93 LYS A 107 GLU A 111 SITE 1 AC2 5 TRP A 167 ASP A 268 GLY A 270 GLN A 271 SITE 2 AC2 5 ARG A 274 SITE 1 AC3 5 HIS A 276 GLY A 284 GLY A 285 GLU A 287 SITE 2 AC3 5 GLU A 290 CRYST1 43.350 71.820 94.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010616 0.00000 MASTER 357 0 12 15 6 0 5 6 0 0 0 22 END