HEADER HYDROLASE 23-APR-13 4KBF TITLE TWO DIFFERENT OPEN CONFORMATIONS OF THE HELICASE CORE OF THE RNA TITLE 2 HELICASE HERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEAT RESISTANT RNA DEPENDENT ATPASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: HELICASE CORE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 5 GENE: TT_C1895; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEAD BOX RNA HELICASE, DIMER, ATP-BINDING, HELICASE, HYDROLASE, KEYWDS 2 NUCLEOTIDE-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.G.RUDOLPH,D.KLOSTERMEIER REVDAT 3 15-NOV-17 4KBF 1 REMARK REVDAT 2 25-DEC-13 4KBF 1 JRNL REVDAT 1 31-JUL-13 4KBF 0 JRNL AUTH D.KLOSTERMEIER JRNL TITL REARRANGING RNA STRUCTURES AT 75C? TOWARD THE MOLECULAR JRNL TITL 2 MECHANISM AND PHYSIOLOGICAL FUNCTION OF THE THERMUS JRNL TITL 3 THERMOPHILUS DEAD-BOX HELICASE HERA. JRNL REF BIOPOLYMERS V. 99 1137 2013 JRNL REFN ISSN 0006-3525 JRNL PMID 23765433 JRNL DOI 10.1002/BIP.22316 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1327) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 61164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8919 - 5.3217 1.00 2911 144 0.1866 0.2157 REMARK 3 2 5.3217 - 4.2247 1.00 2724 160 0.1596 0.1757 REMARK 3 3 4.2247 - 3.6909 1.00 2698 155 0.1716 0.2178 REMARK 3 4 3.6909 - 3.3535 1.00 2700 137 0.1773 0.1772 REMARK 3 5 3.3535 - 3.1132 1.00 2679 139 0.1904 0.2272 REMARK 3 6 3.1132 - 2.9297 1.00 2624 172 0.2013 0.1990 REMARK 3 7 2.9297 - 2.7830 1.00 2649 134 0.2032 0.2633 REMARK 3 8 2.7830 - 2.6619 1.00 2663 134 0.2076 0.2256 REMARK 3 9 2.6619 - 2.5594 1.00 2649 137 0.2045 0.2125 REMARK 3 10 2.5594 - 2.4711 0.99 2625 133 0.2062 0.2438 REMARK 3 11 2.4711 - 2.3938 0.99 2620 141 0.1943 0.2864 REMARK 3 12 2.3938 - 2.3254 0.99 2630 138 0.1931 0.1996 REMARK 3 13 2.3254 - 2.2642 0.99 2623 144 0.1922 0.2290 REMARK 3 14 2.2642 - 2.2089 0.99 2620 122 0.1983 0.2475 REMARK 3 15 2.2089 - 2.1587 0.99 2613 147 0.1973 0.2445 REMARK 3 16 2.1587 - 2.1128 0.99 2589 137 0.2073 0.2409 REMARK 3 17 2.1128 - 2.0705 0.99 2608 129 0.2190 0.2564 REMARK 3 18 2.0705 - 2.0314 0.99 2582 136 0.2441 0.2969 REMARK 3 19 2.0314 - 1.9952 0.99 2570 162 0.2396 0.2777 REMARK 3 20 1.9952 - 1.9613 0.99 2562 147 0.2425 0.2763 REMARK 3 21 1.9613 - 1.9297 0.99 2595 134 0.2749 0.3247 REMARK 3 22 1.9297 - 1.9000 0.97 2511 137 0.3695 0.4462 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5762 REMARK 3 ANGLE : 0.977 7817 REMARK 3 CHIRALITY : 0.061 897 REMARK 3 PLANARITY : 0.005 1031 REMARK 3 DIHEDRAL : 14.606 2218 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 1:207) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8015 -47.5538 -13.3779 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.2573 REMARK 3 T33: 0.2343 T12: -0.0291 REMARK 3 T13: 0.0048 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 1.0513 L22: 1.1035 REMARK 3 L33: 3.3333 L12: -0.1636 REMARK 3 L13: 0.3590 L23: 0.0456 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: 0.0563 S13: 0.0202 REMARK 3 S21: -0.0917 S22: -0.0941 S23: -0.0638 REMARK 3 S31: -0.0219 S32: 0.4578 S33: 0.1435 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 208:365) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1541 -22.5722 -2.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.3020 T22: 0.3712 REMARK 3 T33: 0.2319 T12: -0.1005 REMARK 3 T13: 0.0028 T23: -0.0531 REMARK 3 L TENSOR REMARK 3 L11: 3.6516 L22: 5.7323 REMARK 3 L33: 3.3145 L12: -0.1146 REMARK 3 L13: 0.3407 L23: -0.4084 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: -0.6569 S13: 0.1770 REMARK 3 S21: 0.4130 S22: 0.0806 S23: -0.0212 REMARK 3 S31: -0.0038 S32: -0.1954 S33: -0.0825 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 1:207) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2183 -41.1083 21.4010 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.3003 REMARK 3 T33: 0.3304 T12: 0.0382 REMARK 3 T13: 0.0006 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 1.0303 L22: 1.7872 REMARK 3 L33: 2.2582 L12: 0.0894 REMARK 3 L13: -0.1169 L23: -0.2991 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: -0.1771 S13: 0.2612 REMARK 3 S21: 0.2717 S22: 0.0397 S23: 0.1300 REMARK 3 S31: -0.2806 S32: -0.0645 S33: 0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 212:365) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3901 -10.1319 -19.3882 REMARK 3 T TENSOR REMARK 3 T11: 1.0516 T22: 0.9255 REMARK 3 T33: 1.3070 T12: 0.1563 REMARK 3 T13: -0.1793 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 5.8143 L22: 3.3673 REMARK 3 L33: 1.8781 L12: -1.7443 REMARK 3 L13: 0.5487 L23: -0.1819 REMARK 3 S TENSOR REMARK 3 S11: 0.1851 S12: -0.3834 S13: 0.3566 REMARK 3 S21: 0.5723 S22: 0.0747 S23: -1.3342 REMARK 3 S31: -0.3954 S32: 0.3149 S33: -0.2155 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KBF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000079127. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61258 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.01 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07190 REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.73 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.81720 REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GXQ, 2DB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.54750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.82250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.32125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.82250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.77375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.82250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.32125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.82250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.82250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.77375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.54750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE CORE IS MONOMERIC WHILE THE INTACT HERA IS A DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 512 O HOH B 556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 342 OE1 GLU B 83 6545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 46 -112.22 -110.93 REMARK 500 GLU A 152 61.49 71.44 REMARK 500 ASN A 199 59.40 38.17 REMARK 500 GLU B 152 61.58 60.21 REMARK 500 ARG B 223 78.23 -65.27 REMARK 500 SER B 273 -173.87 -68.50 REMARK 500 ALA B 283 -7.41 -149.28 REMARK 500 ASP B 303 49.07 -77.41 REMARK 500 ASP B 308 -75.31 -91.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 590 O REMARK 620 2 HOH A 591 O 86.6 REMARK 620 3 THR A 47 O 94.9 154.5 REMARK 620 4 PRO A 210 O 106.7 91.2 112.5 REMARK 620 5 THR A 212 OG1 170.8 93.0 81.5 82.5 REMARK 620 6 THR A 47 OG1 91.2 78.7 75.8 159.0 79.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 503 O REMARK 620 2 PHE A 6 O 86.1 REMARK 620 3 HOH A 521 O 95.8 93.6 REMARK 620 4 LYS A 4 O 156.5 98.9 106.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EAS RELATED DB: PDB REMARK 900 RELATED ID: 3EAR RELATED DB: PDB REMARK 900 RELATED ID: 3EAQ RELATED DB: PDB REMARK 900 RELATED ID: 4KBG RELATED DB: PDB DBREF 4KBF A 1 365 UNP Q72GF3 Q72GF3_THET2 8 372 DBREF 4KBF B 1 365 UNP Q72GF3 Q72GF3_THET2 8 372 SEQRES 1 A 365 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 A 365 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 A 365 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 A 365 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 A 365 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 A 365 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 A 365 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 A 365 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 A 365 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 A 365 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 A 365 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 A 365 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 A 365 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 A 365 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 A 365 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 A 365 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS ASP SEQRES 17 A 365 GLU PRO VAL THR TYR GLU GLU GLU ALA VAL PRO ALA PRO SEQRES 18 A 365 VAL ARG GLY ARG LEU GLU VAL LEU SER ASP LEU LEU TYR SEQRES 19 A 365 VAL ALA SER PRO ASP ARG ALA MET VAL PHE THR ARG THR SEQRES 20 A 365 LYS ALA GLU THR GLU GLU ILE ALA GLN GLY LEU LEU ARG SEQRES 21 A 365 LEU GLY HIS PRO ALA GLN ALA LEU HIS GLY ASP LEU SER SEQRES 22 A 365 GLN GLY GLU ARG GLU ARG VAL LEU GLY ALA PHE ARG GLN SEQRES 23 A 365 GLY GLU VAL ARG VAL LEU VAL ALA THR ASP VAL ALA ALA SEQRES 24 A 365 ARG GLY LEU ASP ILE PRO GLN VAL ASP LEU VAL VAL HIS SEQRES 25 A 365 TYR ARG LEU PRO ASP ARG ALA GLU ALA TYR GLN HIS ARG SEQRES 26 A 365 SER GLY ARG THR GLY ARG ALA GLY ARG GLY GLY ARG VAL SEQRES 27 A 365 VAL LEU LEU TYR GLY PRO ARG GLU ARG ARG ASP VAL GLU SEQRES 28 A 365 ALA LEU GLU ARG ALA VAL GLY ARG ARG PHE LYS ARG VAL SEQRES 29 A 365 ASN SEQRES 1 B 365 MET GLU PHE LYS ASP PHE PRO LEU LYS PRO GLU ILE LEU SEQRES 2 B 365 GLU ALA LEU HIS GLY ARG GLY LEU THR THR PRO THR PRO SEQRES 3 B 365 ILE GLN ALA ALA ALA LEU PRO LEU ALA LEU GLU GLY LYS SEQRES 4 B 365 ASP LEU ILE GLY GLN ALA ARG THR GLY THR GLY LYS THR SEQRES 5 B 365 LEU ALA PHE ALA LEU PRO ILE ALA GLU ARG LEU ALA PRO SEQRES 6 B 365 SER GLN GLU ARG GLY ARG LYS PRO ARG ALA LEU VAL LEU SEQRES 7 B 365 THR PRO THR ARG GLU LEU ALA LEU GLN VAL ALA SER GLU SEQRES 8 B 365 LEU THR ALA VAL ALA PRO HIS LEU LYS VAL VAL ALA VAL SEQRES 9 B 365 TYR GLY GLY THR GLY TYR GLY LYS GLN LYS GLU ALA LEU SEQRES 10 B 365 LEU ARG GLY ALA ASP ALA VAL VAL ALA THR PRO GLY ARG SEQRES 11 B 365 ALA LEU ASP TYR LEU ARG GLN GLY VAL LEU ASP LEU SER SEQRES 12 B 365 ARG VAL GLU VAL ALA VAL LEU ASP GLU ALA ASP GLU MET SEQRES 13 B 365 LEU SER MET GLY PHE GLU GLU GLU VAL GLU ALA LEU LEU SEQRES 14 B 365 SER ALA THR PRO PRO SER ARG GLN THR LEU LEU PHE SER SEQRES 15 B 365 ALA THR LEU PRO SER TRP ALA LYS ARG LEU ALA GLU ARG SEQRES 16 B 365 TYR MET LYS ASN PRO VAL LEU ILE ASN VAL ILE LYS ASP SEQRES 17 B 365 GLU PRO VAL THR TYR GLU GLU GLU ALA VAL PRO ALA PRO SEQRES 18 B 365 VAL ARG GLY ARG LEU GLU VAL LEU SER ASP LEU LEU TYR SEQRES 19 B 365 VAL ALA SER PRO ASP ARG ALA MET VAL PHE THR ARG THR SEQRES 20 B 365 LYS ALA GLU THR GLU GLU ILE ALA GLN GLY LEU LEU ARG SEQRES 21 B 365 LEU GLY HIS PRO ALA GLN ALA LEU HIS GLY ASP LEU SER SEQRES 22 B 365 GLN GLY GLU ARG GLU ARG VAL LEU GLY ALA PHE ARG GLN SEQRES 23 B 365 GLY GLU VAL ARG VAL LEU VAL ALA THR ASP VAL ALA ALA SEQRES 24 B 365 ARG GLY LEU ASP ILE PRO GLN VAL ASP LEU VAL VAL HIS SEQRES 25 B 365 TYR ARG LEU PRO ASP ARG ALA GLU ALA TYR GLN HIS ARG SEQRES 26 B 365 SER GLY ARG THR GLY ARG ALA GLY ARG GLY GLY ARG VAL SEQRES 27 B 365 VAL LEU LEU TYR GLY PRO ARG GLU ARG ARG ASP VAL GLU SEQRES 28 B 365 ALA LEU GLU ARG ALA VAL GLY ARG ARG PHE LYS ARG VAL SEQRES 29 B 365 ASN HET AMP A 401 23 HET NA A 402 1 HET NA A 403 1 HET SO4 B 401 5 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM NA SODIUM ION HETNAM SO4 SULFATE ION FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 NA 2(NA 1+) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *159(H2 O) HELIX 1 1 GLU A 2 PHE A 6 5 5 HELIX 2 2 LYS A 9 ARG A 19 1 11 HELIX 3 3 THR A 25 LEU A 36 1 12 HELIX 4 4 GLY A 50 LEU A 63 1 14 HELIX 5 5 THR A 81 ALA A 96 1 16 HELIX 6 6 TYR A 110 GLY A 120 1 11 HELIX 7 7 THR A 127 GLN A 137 1 11 HELIX 8 8 GLU A 152 MET A 159 1 8 HELIX 9 9 PHE A 161 ALA A 171 1 11 HELIX 10 10 PRO A 186 TYR A 196 1 11 HELIX 11 11 ILE A 206 GLU A 209 5 4 HELIX 12 12 GLY A 224 SER A 237 1 14 HELIX 13 13 THR A 247 LEU A 261 1 15 HELIX 14 14 SER A 273 GLN A 286 1 14 HELIX 15 15 ARG A 318 GLY A 327 1 10 HELIX 16 16 GLU A 346 GLY A 358 1 13 HELIX 17 17 GLU B 2 PHE B 6 5 5 HELIX 18 18 LYS B 9 ARG B 19 1 11 HELIX 19 19 THR B 25 GLU B 37 1 13 HELIX 20 20 GLY B 50 LEU B 63 1 14 HELIX 21 21 THR B 81 ALA B 96 1 16 HELIX 22 22 GLY B 109 GLY B 120 1 12 HELIX 23 23 THR B 127 GLN B 137 1 11 HELIX 24 24 GLU B 152 MET B 159 1 8 HELIX 25 25 PHE B 161 ALA B 171 1 11 HELIX 26 26 PRO B 186 MET B 197 1 12 HELIX 27 27 GLY B 224 SER B 237 1 14 HELIX 28 28 LYS B 248 GLY B 262 1 15 HELIX 29 29 ALA B 319 GLY B 327 1 9 HELIX 30 30 GLU B 346 GLY B 358 1 13 SHEET 1 A14 VAL A 101 VAL A 104 0 SHEET 2 A14 ALA A 123 ALA A 126 1 O VAL A 125 N VAL A 104 SHEET 3 A14 ALA A 75 LEU A 78 1 N VAL A 77 O VAL A 124 SHEET 4 A14 VAL A 147 ASP A 151 1 O VAL A 149 N LEU A 78 SHEET 5 A14 GLN A 177 PHE A 181 1 O PHE A 181 N LEU A 150 SHEET 6 A14 LEU A 41 GLN A 44 1 N GLY A 43 O LEU A 180 SHEET 7 A14 VAL A 201 ASN A 204 1 O ILE A 203 N ILE A 42 SHEET 8 A14 VAL B 201 ASN B 204 -1 O LEU B 202 N ASN A 204 SHEET 9 A14 LEU B 41 GLN B 44 1 N GLN B 44 O ILE B 203 SHEET 10 A14 GLN B 177 PHE B 181 1 O LEU B 180 N GLY B 43 SHEET 11 A14 VAL B 147 ASP B 151 1 N LEU B 150 O PHE B 181 SHEET 12 A14 ALA B 75 LEU B 78 1 N LEU B 76 O VAL B 149 SHEET 13 A14 ALA B 123 ALA B 126 1 O VAL B 124 N VAL B 77 SHEET 14 A14 VAL B 101 VAL B 104 1 N VAL B 104 O VAL B 125 SHEET 1 B 7 ALA A 265 LEU A 268 0 SHEET 2 B 7 VAL A 291 ALA A 294 1 O VAL A 293 N LEU A 268 SHEET 3 B 7 ALA A 241 PHE A 244 1 N VAL A 243 O LEU A 292 SHEET 4 B 7 LEU A 309 HIS A 312 1 O VAL A 311 N PHE A 244 SHEET 5 B 7 ARG A 337 TYR A 342 1 O VAL A 339 N HIS A 312 SHEET 6 B 7 GLU A 214 PRO A 219 1 N VAL A 218 O LEU A 340 SHEET 7 B 7 LYS A 362 ARG A 363 1 O LYS A 362 N ALA A 217 SHEET 1 C 7 ALA B 265 GLN B 266 0 SHEET 2 C 7 VAL B 291 THR B 295 1 O VAL B 293 N GLN B 266 SHEET 3 C 7 ALA B 241 THR B 245 1 N ALA B 241 O LEU B 292 SHEET 4 C 7 LEU B 309 HIS B 312 1 O VAL B 311 N MET B 242 SHEET 5 C 7 ARG B 337 LEU B 341 1 O VAL B 339 N VAL B 310 SHEET 6 C 7 GLU B 214 VAL B 218 1 N VAL B 218 O LEU B 340 SHEET 7 C 7 LYS B 362 ARG B 363 1 O LYS B 362 N ALA B 217 LINK NA NA A 403 O HOH A 590 1555 1555 2.26 LINK NA NA A 402 O HOH A 503 1555 1555 2.35 LINK O PHE A 6 NA NA A 402 1555 1555 2.36 LINK NA NA A 402 O HOH A 521 1555 1555 2.37 LINK NA NA A 403 O HOH A 591 1555 1555 2.39 LINK O LYS A 4 NA NA A 402 1555 1555 2.40 LINK O THR A 47 NA NA A 403 1555 1555 2.43 LINK O PRO A 210 NA NA A 403 1555 1555 2.44 LINK OG1 THR A 212 NA NA A 403 1555 1555 2.58 LINK OG1 THR A 47 NA NA A 403 1555 1555 2.65 SITE 1 AC1 16 PHE A 3 LEU A 21 THR A 23 GLN A 28 SITE 2 AC1 16 GLY A 48 THR A 49 GLY A 50 LYS A 51 SITE 3 AC1 16 THR A 52 LEU A 53 GLU A 91 HOH A 511 SITE 4 AC1 16 HOH A 592 HOH A 593 LYS B 362 ASN B 365 SITE 1 AC2 5 LYS A 4 PHE A 6 SER A 170 HOH A 503 SITE 2 AC2 5 HOH A 521 SITE 1 AC3 5 THR A 47 PRO A 210 THR A 212 HOH A 590 SITE 2 AC3 5 HOH A 591 SITE 1 AC4 7 THR B 47 GLY B 48 THR B 49 GLY B 50 SITE 2 AC4 7 LYS B 51 THR B 52 HOH B 533 CRYST1 119.645 119.645 107.095 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009338 0.00000 MASTER 406 0 4 30 28 0 10 6 0 0 0 58 END