HEADER ISOMERASE 19-APR-13 4K9G TITLE 1.55 A CRYSTAL STRUCTURE OF MACROPHAGE MIGRATION INHIBITORY FACTOR TITLE 2 BOUND TO ISO-66 AND A RELATED COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MIF, GLYCOSYLATION-INHIBITING FACTOR, GIF, L-DOPACHROME COMPND 5 ISOMERASE, L-DOPACHROME TAUTOMERASE, PHENYLPYRUVATE TAUTOMERASE; COMPND 6 EC: 5.3.2.1, 5.3.3.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GLIF, MIF, MMIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS CYTOKINE, SECRETED/ENDOCYTOSED, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.V.CRICHLOW,Y.AL-ABED,E.J.LOLIS REVDAT 1 24-SEP-14 4K9G 0 JRNL AUTH K.IOANNOU,K.F.CHENG,G.V.CRICHLOW,A.I.BIRMPILIS,E.J.LOLIS, JRNL AUTH 2 O.E.TSITSILONIS,Y.AL-ABED JRNL TITL ISO-66, A NOVEL INHIBITOR OF MACROPHAGE MIGRATION, SHOWS JRNL TITL 2 EFFICACY IN MELANOMA AND COLON CANCER MODELS. JRNL REF INT J ONCOL. V. 45 1457 2014 JRNL REFN ISSN 1019-6439 JRNL PMID 25050663 JRNL DOI 10.3892/IJO.2014.2551 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0066 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 78325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2580 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.010 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.273 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.276 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; 0.015 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : C B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 C (A): 838 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 838 ; 0.45 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 A (A): 838 ; 0.49 ; 5.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 838 ; 3.87 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 838 ; 2.40 ; 10.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 838 ; 2.28 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 15 REMARK 3 RESIDUE RANGE : A 17 A 35 REMARK 3 RESIDUE RANGE : A 37 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8140 -38.8530 31.3330 REMARK 3 T TENSOR REMARK 3 T11: -0.0933 T22: -0.0254 REMARK 3 T33: 0.0117 T12: -0.0264 REMARK 3 T13: -0.0163 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.5456 L22: 0.5410 REMARK 3 L33: 0.8285 L12: 0.4286 REMARK 3 L13: 0.5311 L23: 0.2027 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.0630 S13: 0.0636 REMARK 3 S21: -0.0576 S22: -0.0253 S23: 0.0735 REMARK 3 S31: 0.0042 S32: -0.0766 S33: 0.0851 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 15 REMARK 3 RESIDUE RANGE : B 17 B 35 REMARK 3 RESIDUE RANGE : B 37 B 114 REMARK 3 ORIGIN FOR THE GROUP (A): 45.8110 -36.5430 34.9890 REMARK 3 T TENSOR REMARK 3 T11: -0.1053 T22: 0.0236 REMARK 3 T33: 0.0102 T12: -0.0077 REMARK 3 T13: -0.0226 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.1641 L22: 0.3505 REMARK 3 L33: 0.7731 L12: 0.1984 REMARK 3 L13: 0.5986 L23: 0.1602 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.0809 S13: 0.0580 REMARK 3 S21: -0.0191 S22: 0.0920 S23: -0.0749 REMARK 3 S31: -0.0017 S32: 0.1856 S33: -0.0148 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 15 REMARK 3 RESIDUE RANGE : C 17 C 35 REMARK 3 RESIDUE RANGE : C 37 C 114 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6950 -44.9670 49.4100 REMARK 3 T TENSOR REMARK 3 T11: -0.0790 T22: 0.0550 REMARK 3 T33: -0.0064 T12: -0.0492 REMARK 3 T13: -0.0232 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 2.0933 L22: 0.4395 REMARK 3 L33: 1.3911 L12: 0.0306 REMARK 3 L13: 1.0095 L23: 0.4242 REMARK 3 S TENSOR REMARK 3 S11: 0.0944 S12: -0.4842 S13: -0.0729 REMARK 3 S21: 0.1421 S22: -0.0338 S23: -0.0215 REMARK 3 S31: 0.2853 S32: -0.2489 S33: -0.0606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WAS BEGUN WITH CNS. REFMAC REMARK 3 WAS USED IN LATER STAGES. IN ACTIVE SITE A, TWO FORMS OF THE REMARK 3 INHIBITOR (RING-OPENED AND RING-CLOSED) WERE OBSERVED. THE LOWER REMARK 3 OCCUPANCY FORM (RING-CLOSED) WAS OBSERVED IN MAPS OMITTING THIS REMARK 3 INHIBITOR FORM WHEN CNS WAS USED FOR MAP CALCULATION, AND MISSING REMARK 3 REFLECTIONS WERE NOT REPLACED BY FC. MAPS CALCULATED USING REMARK 3 REFMAC, AS WELL AS CNS MAPS IN WHICH MISSING REFLECTIONS WERE REMARK 3 REPLACED BY FC, DID NOT REVEAL THE LOWER OCCUPANCY INHIBITOR. TLS REMARK 3 WAS USED IN LATER REFINEMENT STEPS. THE FINAL R-FACTORS LISTED REMARK 3 TAKE THE TLS MODEL INTO ACCOUNT. WITHOUT TLS, R(OBS)=0.22629, REMARK 3 R(WORK)=0.22590, R(FREE)=0.24575. REMARK 4 REMARK 4 4K9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB079058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79934 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 110.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2OOH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 MM (14 MG/ML) MIF , 10 MM REMARK 280 INHIBITOR IN 10% DMSO, 18 MM NACL, 18 MM TRIS(HYDROXYMETHYL) REMARK 280 AMINOMETHANE MIXED 1:1 WITH RESERVOIR CONTAINING 2 M AMMONIUM REMARK 280 SULFATE, 0.1 M TRIS(HYDROXYMETHYL)AMINOMETHANE, 3% ISOPROPANOL, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.85067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.70133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.70133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.85067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 54 CD OE1 OE2 REMARK 470 ARG A 88 CZ NH1 NH2 REMARK 470 ARG B 88 CZ NH1 NH2 REMARK 470 ARG C 11 CD NE CZ NH1 NH2 REMARK 470 GLN C 28 CD OE1 NE2 REMARK 470 GLN C 35 CD OE1 NE2 REMARK 470 LYS C 77 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 111 -159.38 -144.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1Q2 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1Q1 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1Q2 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1Q2 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LJT RELATED DB: PDB REMARK 900 MIF BOUND TO ISO-1 DBREF 4K9G A 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 4K9G B 1 114 UNP P14174 MIF_HUMAN 2 115 DBREF 4K9G C 1 114 UNP P14174 MIF_HUMAN 2 115 SEQRES 1 A 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 A 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 A 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 A 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 A 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 A 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 A 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 A 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 A 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 B 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 B 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 B 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 B 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 B 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 B 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 B 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 B 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 B 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 C 114 PRO MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 C 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 C 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 C 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 C 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 C 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 C 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 C 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 C 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA HET 1Q2 A 201 17 HET 1Q1 A 202 17 HET CL A 203 1 HET CL A 204 1 HET CL A 205 1 HET SO4 A 206 5 HET 1Q2 B 201 17 HET CL B 202 1 HET CL B 203 1 HET 1Q2 C 201 17 HET CL C 202 1 HETNAM 1Q2 (4R,6Z)-6-(3-FLUORO-4-HYDROXYPHENYL)-4-HYDROXY-6- HETNAM 2 1Q2 IMINOHEXAN-2-ONE HETNAM 1Q1 1-[(5S)-3-(3-FLUORO-4-HYDROXYPHENYL)-4,5-DIHYDRO-1,2- HETNAM 2 1Q1 OXAZOL-5-YL]PROPAN-2-ONE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 4 1Q2 3(C12 H14 F N O3) FORMUL 5 1Q1 C12 H12 F N O3 FORMUL 6 CL 6(CL 1-) FORMUL 9 SO4 O4 S 2- FORMUL 15 HOH *281(H2 O) HELIX 1 1 PRO A 10 VAL A 14 5 5 HELIX 2 2 GLY A 17 GLY A 31 1 15 HELIX 3 3 PRO A 33 TYR A 36 5 4 HELIX 4 4 GLY A 68 ARG A 88 1 21 HELIX 5 5 SER A 90 ASP A 92 5 3 HELIX 6 6 ASN A 102 ALA A 104 5 3 HELIX 7 7 PRO B 10 VAL B 14 5 5 HELIX 8 8 GLY B 17 GLY B 31 1 15 HELIX 9 9 PRO B 33 TYR B 36 5 4 HELIX 10 10 GLY B 68 ARG B 88 1 21 HELIX 11 11 SER B 90 ASP B 92 5 3 HELIX 12 12 ASN B 102 ALA B 104 5 3 HELIX 13 13 PRO C 10 VAL C 14 5 5 HELIX 14 14 GLY C 17 GLY C 31 1 15 HELIX 15 15 PRO C 33 TYR C 36 5 4 HELIX 16 16 GLY C 68 ARG C 88 1 21 HELIX 17 17 SER C 90 ASP C 92 5 3 HELIX 18 18 ASN C 102 ALA C 104 5 3 SHEET 1 A 7 LEU B 46 PHE B 49 0 SHEET 2 A 7 ALA A 38 VAL A 42 -1 N VAL A 41 O LEU B 46 SHEET 3 A 7 MET A 2 THR A 7 1 N VAL A 5 O VAL A 42 SHEET 4 A 7 ALA A 57 SER A 63 -1 O HIS A 62 N MET A 2 SHEET 5 A 7 VAL A 94 ASP A 100 1 O TYR A 95 N CYS A 59 SHEET 6 A 7 VAL C 106 TRP C 108 -1 O GLY C 107 N ILE A 96 SHEET 7 A 7 SER C 111 THR C 112 -1 O SER C 111 N TRP C 108 SHEET 1 B 7 LEU A 46 PHE A 49 0 SHEET 2 B 7 ALA C 38 VAL C 42 -1 O VAL C 41 N LEU A 46 SHEET 3 B 7 MET C 2 THR C 7 1 N VAL C 5 O VAL C 42 SHEET 4 B 7 ALA C 57 SER C 63 -1 O LEU C 58 N ASN C 6 SHEET 5 B 7 VAL C 94 ASP C 100 1 O TYR C 95 N CYS C 59 SHEET 6 B 7 VAL B 106 TRP B 108 -1 N GLY B 107 O ILE C 96 SHEET 7 B 7 SER B 111 THR B 112 -1 O SER B 111 N TRP B 108 SHEET 1 C 7 SER A 111 THR A 112 0 SHEET 2 C 7 VAL A 106 TRP A 108 -1 N TRP A 108 O SER A 111 SHEET 3 C 7 VAL B 94 ASP B 100 -1 O ILE B 96 N GLY A 107 SHEET 4 C 7 ALA B 57 SER B 63 1 N CYS B 59 O TYR B 95 SHEET 5 C 7 MET B 2 THR B 7 -1 N ASN B 6 O LEU B 58 SHEET 6 C 7 ALA B 38 VAL B 42 1 O VAL B 42 N VAL B 5 SHEET 7 C 7 LEU C 46 PHE C 49 -1 O ALA C 48 N VAL B 39 SITE 1 AC1 12 PRO A 1 MET A 2 LYS A 32 TYR A 36 SITE 2 AC1 12 HIS A 62 SER A 63 ILE A 64 MET A 101 SITE 3 AC1 12 PHE A 113 TYR B 95 ASN B 97 TRP B 108 SITE 1 AC2 12 PRO A 1 LYS A 32 TYR A 36 HIS A 62 SITE 2 AC2 12 SER A 63 ILE A 64 VAL A 106 PHE A 113 SITE 3 AC2 12 TYR B 95 ASN B 97 ASN B 109 ASP C 92 SITE 1 AC3 5 MET A 101 ASN A 102 ASN A 105 HOH A 369 SITE 2 AC3 5 HOH B 305 SITE 1 AC4 4 GLY A 68 GLY A 69 ALA A 70 GLN A 71 SITE 1 AC5 2 ASP A 16 SER B 53 SITE 1 AC6 4 ARG A 73 HOH A 380 PRO B 15 ASP B 16 SITE 1 AC7 11 ASN A 109 PRO B 1 MET B 2 LYS B 32 SITE 2 AC7 11 TYR B 36 HIS B 62 ILE B 64 ASP B 92 SITE 3 AC7 11 MET B 101 TYR C 95 ASN C 97 SITE 1 AC8 4 MET B 101 ASN B 102 ASN B 105 HOH C 308 SITE 1 AC9 4 GLY B 68 GLY B 69 ALA B 70 GLN B 71 SITE 1 BC1 11 TYR A 95 ASN A 97 PRO C 1 MET C 2 SITE 2 BC1 11 LYS C 32 TYR C 36 HIS C 62 SER C 63 SITE 3 BC1 11 ILE C 64 MET C 101 VAL C 106 SITE 1 BC2 3 HOH A 315 ASN C 102 ASN C 105 CRYST1 95.458 95.458 104.552 90.00 90.00 120.00 P 31 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010476 0.006048 -0.000001 0.00000 SCALE2 0.000000 0.012096 -0.000001 0.00000 SCALE3 0.000000 0.000000 0.009565 0.00000 MASTER 410 0 11 18 21 0 20 6 0 0 0 27 END