HEADER TRANSFERASE/RNA 12-APR-13 4K4U TITLE POLIOVIRUS POLYMERASE ELONGATION COMPLEX (R5_FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE 3D-POL; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: UNP RESIDUES 1749-2209; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'- COMPND 10 R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP* COMPND 11 GP*AP*AP*A)-3'); COMPND 12 CHAIN: B, F; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)- COMPND 16 3'); COMPND 17 CHAIN: C, G; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: RNA (5'-R(P*GP*GP*GP*GP*GP*AP*GP*AP*UP*GP*A)-3'); COMPND 21 CHAIN: H, D; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN POLIOVIRUS 1; SOURCE 3 ORGANISM_TAXID: 12081; SOURCE 4 STRAIN: MAHONEY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 4; SOURCE 12 SYNTHETIC: YES KEYWDS POLYMERASE, RNA-DEPENDENT RNA POLYMERASE, PROTEIN-RNA COMPLEX, KEYWDS 2 TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.GONG,O.B.PEERSEN REVDAT 2 03-JUL-13 4K4U 1 JRNL REVDAT 1 22-MAY-13 4K4U 0 JRNL AUTH P.GONG,M.G.KORTUS,J.C.NIX,R.E.DAVIS,O.B.PEERSEN JRNL TITL STRUCTURES OF COXSACKIEVIRUS, RHINOVIRUS, AND POLIOVIRUS JRNL TITL 2 POLYMERASE ELONGATION COMPLEXES SOLVED BY ENGINEERING RNA JRNL TITL 3 MEDIATED CRYSTAL CONTACTS. JRNL REF PLOS ONE V. 8 60272 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23667424 JRNL DOI 10.1371/JOURNAL.PONE.0060272 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 34099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2675 - 6.5181 0.97 2653 141 0.1925 0.2112 REMARK 3 2 6.5181 - 5.1763 0.99 2723 161 0.1925 0.2726 REMARK 3 3 5.1763 - 4.5228 0.98 2688 146 0.1697 0.2394 REMARK 3 4 4.5228 - 4.1096 0.98 2754 145 0.1753 0.2195 REMARK 3 5 4.1096 - 3.8153 0.98 2659 147 0.2134 0.2760 REMARK 3 6 3.8153 - 3.5904 0.98 2688 149 0.2934 0.3945 REMARK 3 7 3.5904 - 3.4107 0.98 2713 139 0.2803 0.3532 REMARK 3 8 3.4107 - 3.2623 0.98 2742 140 0.2778 0.3807 REMARK 3 9 3.2623 - 3.1367 0.98 2699 136 0.2815 0.3164 REMARK 3 10 3.1367 - 3.0285 0.98 2644 145 0.2982 0.3778 REMARK 3 11 3.0285 - 2.9338 0.98 2701 144 0.3233 0.3775 REMARK 3 12 2.9338 - 2.8500 0.98 2692 150 0.3582 0.3788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 9324 REMARK 3 ANGLE : 1.253 12954 REMARK 3 CHIRALITY : 0.049 1470 REMARK 3 PLANARITY : 0.007 1376 REMARK 3 DIHEDRAL : 16.781 3674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DTREK REMARK 200 DATA SCALING SOFTWARE : DTREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 45.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 2.010 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.02 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.8%(V/V) ISOPROPANOL, 0.096 M REMARK 280 TACSIMATE (HAMPTON RESEARCH), PH 8.5-9.0, 1.92-1.95 M AMMONIUM REMARK 280 SULFATE, AND 10-11%(V/V) GLYCEROL AND THEN GRADUALLY EXCHANGED REMARK 280 INTO A CRYO STABILIZER SOLUTION CONTAINING 4.8%(V/V) ISOPROPANOL, REMARK 280 0.096 M TACSIMATE, 1.95 M AMMONIUM SULFATE AND 19-27%(V/V) REMARK 280 XYLITOL PRIOR TO FREEZING, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 SER A 465 REMARK 465 HIS A 466 REMARK 465 HIS A 467 REMARK 465 HIS A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 A B 590 REMARK 465 A B 591 REMARK 465 G B 592 REMARK 465 U B 593 REMARK 465 C B 594 REMARK 465 U B 595 REMARK 465 A B 615 REMARK 465 U C 686 REMARK 465 SER E 463 REMARK 465 SER E 464 REMARK 465 SER E 465 REMARK 465 HIS E 466 REMARK 465 HIS E 467 REMARK 465 HIS E 468 REMARK 465 HIS E 469 REMARK 465 HIS E 470 REMARK 465 HIS E 471 REMARK 465 A F 590 REMARK 465 A F 591 REMARK 465 G F 592 REMARK 465 U F 593 REMARK 465 C F 594 REMARK 465 U F 595 REMARK 465 A F 615 REMARK 465 U G 686 REMARK 465 G H 806 REMARK 465 G H 807 REMARK 465 G H 808 REMARK 465 A H 809 REMARK 465 G H 810 REMARK 465 A H 811 REMARK 465 U H 812 REMARK 465 G H 813 REMARK 465 A H 814 REMARK 465 G D 806 REMARK 465 G D 807 REMARK 465 G D 808 REMARK 465 A D 809 REMARK 465 G D 810 REMARK 465 A D 811 REMARK 465 U D 812 REMARK 465 G D 813 REMARK 465 A D 814 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH G 801 O HOH G 806 2.04 REMARK 500 O TYR E 326 O2' A G 701 2.15 REMARK 500 O TYR A 326 O2' A C 701 2.18 REMARK 500 O ALA E 57 OG SER E 60 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 212 CA - CB - SG ANGL. DEV. = 7.7 DEGREES REMARK 500 C B 606 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 A C 697 O5' - P - OP2 ANGL. DEV. = -6.1 DEGREES REMARK 500 C F 606 N3 - C4 - C5 ANGL. DEV. = -2.6 DEGREES REMARK 500 C F 606 N3 - C4 - N4 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 29 -9.78 -58.89 REMARK 500 VAL A 33 -85.77 -62.63 REMARK 500 LYS A 66 -50.06 -134.39 REMARK 500 THR A 68 -27.72 -143.57 REMARK 500 ASP A 89 77.48 55.71 REMARK 500 ALA A 100 -18.07 -47.64 REMARK 500 ASP A 105 94.92 -58.86 REMARK 500 THR A 138 -89.85 -73.54 REMARK 500 LYS A 139 -79.01 27.13 REMARK 500 SER A 164 172.48 -58.22 REMARK 500 GLU A 227 -95.23 -63.76 REMARK 500 LYS A 276 -108.44 62.39 REMARK 500 LYS A 314 109.35 -51.77 REMARK 500 GLN A 345 -80.58 -61.09 REMARK 500 SER A 346 72.74 -59.80 REMARK 500 LYS A 359 29.82 40.86 REMARK 500 PHE A 363 96.10 -68.07 REMARK 500 TRP A 368 5.60 -62.50 REMARK 500 VAL E 33 -82.36 -62.14 REMARK 500 PHE E 54 -70.30 -67.43 REMARK 500 LYS E 66 -50.90 -136.77 REMARK 500 THR E 68 -26.68 -144.65 REMARK 500 ASP E 89 77.78 55.18 REMARK 500 ALA E 100 -17.76 -48.80 REMARK 500 ASP E 105 98.26 -62.92 REMARK 500 LEU E 112 20.14 -78.73 REMARK 500 THR E 138 -81.99 -74.09 REMARK 500 LYS E 139 -73.35 17.78 REMARK 500 SER E 173 -173.93 -68.20 REMARK 500 GLU E 227 -96.11 -65.48 REMARK 500 LYS E 276 -107.75 63.62 REMARK 500 LYS E 314 109.84 -51.69 REMARK 500 GLN E 345 -82.54 -60.31 REMARK 500 SER E 346 69.79 -62.43 REMARK 500 ASP E 358 61.49 64.46 REMARK 500 LYS E 359 28.63 40.83 REMARK 500 PHE E 363 99.83 -69.28 REMARK 500 TRP E 368 5.90 -62.97 REMARK 500 TYR E 384 77.09 -150.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3OL6 RELATED DB: PDB REMARK 900 RELATED ID: 1RA6 RELATED DB: PDB REMARK 900 RELATED ID: 4K4S RELATED DB: PDB REMARK 900 RELATED ID: 4K4T RELATED DB: PDB REMARK 900 RELATED ID: 4K4V RELATED DB: PDB REMARK 900 RELATED ID: 4K4W RELATED DB: PDB REMARK 900 RELATED ID: 4K4X RELATED DB: PDB REMARK 900 RELATED ID: 4K4Y RELATED DB: PDB REMARK 900 RELATED ID: 4K4Z RELATED DB: PDB REMARK 900 RELATED ID: 4K50 RELATED DB: PDB DBREF 4K4U A 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4U E 1 461 UNP P03300 POLG_POL1M 1749 2209 DBREF 4K4U B 590 615 PDB 4K4U 4K4U 590 615 DBREF 4K4U F 590 615 PDB 4K4U 4K4U 590 615 DBREF 4K4U C 686 701 PDB 4K4U 4K4U 686 701 DBREF 4K4U G 686 701 PDB 4K4U 4K4U 686 701 DBREF 4K4U H 804 814 PDB 4K4U 4K4U 804 814 DBREF 4K4U D 804 814 PDB 4K4U 4K4U 804 814 SEQADV 4K4U MET A 290 UNP P03300 CYS 2038 ENGINEERED MUTATION SEQADV 4K4U ASP A 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4U GLY A 462 UNP P03300 EXPRESSION TAG SEQADV 4K4U SER A 463 UNP P03300 EXPRESSION TAG SEQADV 4K4U SER A 464 UNP P03300 EXPRESSION TAG SEQADV 4K4U SER A 465 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS A 466 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS A 467 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS A 468 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS A 469 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS A 470 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS A 471 UNP P03300 EXPRESSION TAG SEQADV 4K4U MET E 290 UNP P03300 CYS 2038 ENGINEERED MUTATION SEQADV 4K4U ASP E 446 UNP P03300 LEU 2194 ENGINEERED MUTATION SEQADV 4K4U GLY E 462 UNP P03300 EXPRESSION TAG SEQADV 4K4U SER E 463 UNP P03300 EXPRESSION TAG SEQADV 4K4U SER E 464 UNP P03300 EXPRESSION TAG SEQADV 4K4U SER E 465 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS E 466 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS E 467 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS E 468 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS E 469 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS E 470 UNP P03300 EXPRESSION TAG SEQADV 4K4U HIS E 471 UNP P03300 EXPRESSION TAG SEQRES 1 A 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 A 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 A 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 A 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 A 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 A 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 A 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 A 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 A 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 A 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 A 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 A 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 A 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 A 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 A 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 A 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 A 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 A 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 A 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 A 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 A 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 A 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 A 471 PRO SER GLY MET SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 A 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 A 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 A 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 A 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 A 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 A 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 A 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 A 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 A 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 A 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 A 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 A 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 A 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 A 471 HIS HIS HIS SEQRES 1 B 26 A A G U C U C C A G G U C SEQRES 2 B 26 U C U C U C G U C G A A A SEQRES 1 C 16 U G U U C G A C G A G A G SEQRES 2 C 16 A G A SEQRES 1 E 471 GLY GLU ILE GLN TRP MET ARG PRO SER LYS GLU VAL GLY SEQRES 2 E 471 TYR PRO ILE ILE ASN ALA PRO SER LYS THR LYS LEU GLU SEQRES 3 E 471 PRO SER ALA PHE HIS TYR VAL PHE GLU GLY VAL LYS GLU SEQRES 4 E 471 PRO ALA VAL LEU THR LYS ASN ASP PRO ARG LEU LYS THR SEQRES 5 E 471 ASP PHE GLU GLU ALA ILE PHE SER LYS TYR VAL GLY ASN SEQRES 6 E 471 LYS ILE THR GLU VAL ASP GLU TYR MET LYS GLU ALA VAL SEQRES 7 E 471 ASP HIS TYR ALA GLY GLN LEU MET SER LEU ASP ILE ASN SEQRES 8 E 471 THR GLU GLN MET CYS LEU GLU ASP ALA MET TYR GLY THR SEQRES 9 E 471 ASP GLY LEU GLU ALA LEU ASP LEU SER THR SER ALA GLY SEQRES 10 E 471 TYR PRO TYR VAL ALA MET GLY LYS LYS LYS ARG ASP ILE SEQRES 11 E 471 LEU ASN LYS GLN THR ARG ASP THR LYS GLU MET GLN LYS SEQRES 12 E 471 LEU LEU ASP THR TYR GLY ILE ASN LEU PRO LEU VAL THR SEQRES 13 E 471 TYR VAL LYS ASP GLU LEU ARG SER LYS THR LYS VAL GLU SEQRES 14 E 471 GLN GLY LYS SER ARG LEU ILE GLU ALA SER SER LEU ASN SEQRES 15 E 471 ASP SER VAL ALA MET ARG MET ALA PHE GLY ASN LEU TYR SEQRES 16 E 471 ALA ALA PHE HIS LYS ASN PRO GLY VAL ILE THR GLY SER SEQRES 17 E 471 ALA VAL GLY CYS ASP PRO ASP LEU PHE TRP SER LYS ILE SEQRES 18 E 471 PRO VAL LEU MET GLU GLU LYS LEU PHE ALA PHE ASP TYR SEQRES 19 E 471 THR GLY TYR ASP ALA SER LEU SER PRO ALA TRP PHE GLU SEQRES 20 E 471 ALA LEU LYS MET VAL LEU GLU LYS ILE GLY PHE GLY ASP SEQRES 21 E 471 ARG VAL ASP TYR ILE ASP TYR LEU ASN HIS SER HIS HIS SEQRES 22 E 471 LEU TYR LYS ASN LYS THR TYR CYS VAL LYS GLY GLY MET SEQRES 23 E 471 PRO SER GLY MET SER GLY THR SER ILE PHE ASN SER MET SEQRES 24 E 471 ILE ASN ASN LEU ILE ILE ARG THR LEU LEU LEU LYS THR SEQRES 25 E 471 TYR LYS GLY ILE ASP LEU ASP HIS LEU LYS MET ILE ALA SEQRES 26 E 471 TYR GLY ASP ASP VAL ILE ALA SER TYR PRO HIS GLU VAL SEQRES 27 E 471 ASP ALA SER LEU LEU ALA GLN SER GLY LYS ASP TYR GLY SEQRES 28 E 471 LEU THR MET THR PRO ALA ASP LYS SER ALA THR PHE GLU SEQRES 29 E 471 THR VAL THR TRP GLU ASN VAL THR PHE LEU LYS ARG PHE SEQRES 30 E 471 PHE ARG ALA ASP GLU LYS TYR PRO PHE LEU ILE HIS PRO SEQRES 31 E 471 VAL MET PRO MET LYS GLU ILE HIS GLU SER ILE ARG TRP SEQRES 32 E 471 THR LYS ASP PRO ARG ASN THR GLN ASP HIS VAL ARG SER SEQRES 33 E 471 LEU CYS LEU LEU ALA TRP HIS ASN GLY GLU GLU GLU TYR SEQRES 34 E 471 ASN LYS PHE LEU ALA LYS ILE ARG SER VAL PRO ILE GLY SEQRES 35 E 471 ARG ALA LEU ASP LEU PRO GLU TYR SER THR LEU TYR ARG SEQRES 36 E 471 ARG TRP LEU ASP SER PHE GLY SER SER SER HIS HIS HIS SEQRES 37 E 471 HIS HIS HIS SEQRES 1 F 26 A A G U C U C C A G G U C SEQRES 2 F 26 U C U C U C G U C G A A A SEQRES 1 G 16 U G U U C G A C G A G A G SEQRES 2 G 16 A G A SEQRES 1 H 11 G G G G G A G A U G A SEQRES 1 D 11 G G G G G A G A U G A HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 E 501 5 HET SO4 E 502 5 HETNAM SO4 SULFATE ION FORMUL 9 SO4 4(O4 S 2-) FORMUL 13 HOH *57(H2 O) HELIX 1 1 LYS A 10 VAL A 12 5 3 HELIX 2 2 ASP A 53 PHE A 59 1 7 HELIX 3 3 ASP A 71 MET A 86 1 16 HELIX 4 4 SER A 87 ASP A 89 5 3 HELIX 5 5 CYS A 96 GLY A 103 1 8 HELIX 6 6 PRO A 119 GLY A 124 1 6 HELIX 7 7 LYS A 126 ILE A 130 5 5 HELIX 8 8 LYS A 139 GLY A 149 1 11 HELIX 9 9 SER A 164 GLU A 169 1 6 HELIX 10 10 SER A 180 GLY A 192 1 13 HELIX 11 11 LEU A 194 LYS A 200 1 7 HELIX 12 12 ASP A 213 MET A 225 1 13 HELIX 13 13 GLY A 236 LEU A 241 1 6 HELIX 14 14 SER A 242 ILE A 256 1 15 HELIX 15 15 ASP A 260 TYR A 264 5 5 HELIX 16 16 ILE A 265 ASN A 269 1 5 HELIX 17 17 GLY A 292 TYR A 313 1 22 HELIX 18 18 ASP A 317 LEU A 321 5 5 HELIX 19 19 ASP A 339 SER A 346 1 8 HELIX 20 20 GLY A 347 GLY A 351 5 5 HELIX 21 21 PRO A 393 ARG A 402 1 10 HELIX 22 22 ASP A 406 ARG A 408 5 3 HELIX 23 23 ASN A 409 TRP A 422 1 14 HELIX 24 24 GLY A 425 ARG A 437 1 13 HELIX 25 25 VAL A 439 LEU A 445 1 7 HELIX 26 26 GLU A 449 SER A 460 1 12 HELIX 27 27 LYS E 10 VAL E 12 5 3 HELIX 28 28 ASP E 53 PHE E 59 1 7 HELIX 29 29 ASP E 71 MET E 86 1 16 HELIX 30 30 SER E 87 ASP E 89 5 3 HELIX 31 31 CYS E 96 GLY E 103 1 8 HELIX 32 32 PRO E 119 GLY E 124 1 6 HELIX 33 33 LYS E 126 ILE E 130 5 5 HELIX 34 34 LYS E 139 GLY E 149 1 11 HELIX 35 35 LYS E 165 GLN E 170 1 6 HELIX 36 36 SER E 180 GLY E 192 1 13 HELIX 37 37 LEU E 194 LYS E 200 1 7 HELIX 38 38 ASP E 213 TRP E 218 1 6 HELIX 39 39 SER E 219 MET E 225 1 7 HELIX 40 40 GLY E 236 LEU E 241 1 6 HELIX 41 41 SER E 242 ILE E 256 1 15 HELIX 42 42 GLY E 257 TYR E 264 5 8 HELIX 43 43 ILE E 265 ASN E 269 1 5 HELIX 44 44 GLY E 292 TYR E 313 1 22 HELIX 45 45 ASP E 317 LEU E 321 5 5 HELIX 46 46 ASP E 339 SER E 346 1 8 HELIX 47 47 GLY E 347 GLY E 351 5 5 HELIX 48 48 PRO E 393 ARG E 402 1 10 HELIX 49 49 ASP E 406 ARG E 408 5 3 HELIX 50 50 ASN E 409 TRP E 422 1 14 HELIX 51 51 GLY E 425 ARG E 437 1 13 HELIX 52 52 VAL E 439 LEU E 445 1 7 HELIX 53 53 GLU E 449 SER E 460 1 12 SHEET 1 A 5 GLU A 2 PRO A 8 0 SHEET 2 A 5 LYS A 278 LYS A 283 -1 O CYS A 281 N GLN A 4 SHEET 3 A 5 HIS A 270 TYR A 275 -1 N SER A 271 O VAL A 282 SHEET 4 A 5 LEU A 154 VAL A 158 1 N THR A 156 O LEU A 274 SHEET 5 A 5 LEU A 175 ALA A 178 -1 O ILE A 176 N TYR A 157 SHEET 1 B 2 GLU A 26 PRO A 27 0 SHEET 2 B 2 TRP A 403 THR A 404 -1 O THR A 404 N GLU A 26 SHEET 1 C 2 GLU A 39 PRO A 40 0 SHEET 2 C 2 LEU A 162 ARG A 163 -1 O ARG A 163 N GLU A 39 SHEET 1 D 3 LYS A 228 PHE A 230 0 SHEET 2 D 3 ASP A 329 TYR A 334 -1 O TYR A 334 N LYS A 228 SHEET 3 D 3 LYS A 322 TYR A 326 -1 N TYR A 326 O ASP A 329 SHEET 1 E 2 PHE A 232 TYR A 234 0 SHEET 2 E 2 MET A 354 PRO A 356 -1 O THR A 355 N ASP A 233 SHEET 1 F 3 THR A 372 PHE A 373 0 SHEET 2 F 3 ARG A 376 ALA A 380 -1 O ARG A 376 N PHE A 373 SHEET 3 F 3 ILE A 388 VAL A 391 -1 O VAL A 391 N PHE A 377 SHEET 1 G 5 GLU E 2 PRO E 8 0 SHEET 2 G 5 LYS E 278 LYS E 283 -1 O CYS E 281 N GLN E 4 SHEET 3 G 5 HIS E 270 TYR E 275 -1 N HIS E 273 O TYR E 280 SHEET 4 G 5 LEU E 154 VAL E 158 1 N LEU E 154 O LEU E 274 SHEET 5 G 5 LEU E 175 ALA E 178 -1 O ILE E 176 N TYR E 157 SHEET 1 H 2 GLU E 26 PRO E 27 0 SHEET 2 H 2 TRP E 403 THR E 404 -1 O THR E 404 N GLU E 26 SHEET 1 I 2 GLU E 39 PRO E 40 0 SHEET 2 I 2 LEU E 162 ARG E 163 -1 O ARG E 163 N GLU E 39 SHEET 1 J 3 LYS E 228 PHE E 230 0 SHEET 2 J 3 ASP E 329 TYR E 334 -1 O ALA E 332 N PHE E 230 SHEET 3 J 3 LYS E 322 TYR E 326 -1 N TYR E 326 O ASP E 329 SHEET 1 K 2 PHE E 232 TYR E 234 0 SHEET 2 K 2 MET E 354 PRO E 356 -1 O THR E 355 N ASP E 233 SHEET 1 L 2 PHE E 377 ALA E 380 0 SHEET 2 L 2 ILE E 388 VAL E 391 -1 O VAL E 391 N PHE E 377 CISPEP 1 TYR A 118 PRO A 119 0 2.10 CISPEP 2 TYR E 118 PRO E 119 0 1.20 SITE 1 AC1 5 LYS A 38 SER A 164 LYS A 167 LYS A 359 SITE 2 AC1 5 HOH A 607 SITE 1 AC2 1 ARG A 163 SITE 1 AC3 5 LYS E 38 ARG E 163 SER E 164 LYS E 167 SITE 2 AC3 5 LYS E 359 SITE 1 AC4 1 ARG E 163 CRYST1 63.654 63.870 105.095 101.08 106.22 103.03 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015710 0.003635 0.005781 0.00000 SCALE2 0.000000 0.016070 0.004555 0.00000 SCALE3 0.000000 0.000000 0.010300 0.00000 MASTER 379 0 4 53 33 0 6 6 0 0 0 84 END