HEADER TOXIN 03-APR-13 4K09 TITLE CRYSTAL STRUCTURE OF BBTX-II FROM BOTHROPS BRAZILI VENOM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BBTX-II; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOTHROPS BRAZILI; SOURCE 3 ORGANISM_TAXID: 157546 KEYWDS PHOSPHOLIPASES A2, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR C.A.H.FERNANDES,E.J.COMPARETTI,R.J.BORGES,M.R.M.FONTES REVDAT 2 27-NOV-13 4K09 1 COMPND DBREF REMARK SOURCE REVDAT 1 20-NOV-13 4K09 0 JRNL AUTH C.A.H.FERNANDES,E.J.COMPARETTI,R.J.BORGES, JRNL AUTH 2 S.HUANCAHUIRE-VEGA,L.A.PONCE-SOTO,S.MARANGONI,A.M.SOARES, JRNL AUTH 3 M.R.M.FONTES JRNL TITL STRUCTURAL BASES FOR A COMPLETE MYOTOXIC MECHANISM: CRYSTAL JRNL TITL 2 STRUCTURES OF TWO NON-CATALYTIC PHOSPHOLIPASES A2-LIKE FROM JRNL TITL 3 BOTHROPS BRAZILI VENOM. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 2772 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 24145104 JRNL DOI 10.1016/J.BBAPAP.2013.10.009 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 13324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.2993 - 3.6013 0.90 2604 131 0.1810 0.2277 REMARK 3 2 3.6013 - 2.8590 0.96 2636 130 0.1886 0.2352 REMARK 3 3 2.8590 - 2.4978 0.98 2648 147 0.2096 0.2663 REMARK 3 4 2.4978 - 2.2695 0.98 2617 143 0.2116 0.2589 REMARK 3 5 2.2695 - 2.1068 0.98 2619 148 0.2334 0.3015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1834 REMARK 3 ANGLE : 0.835 2461 REMARK 3 CHIRALITY : 0.059 265 REMARK 3 PLANARITY : 0.004 322 REMARK 3 DIHEDRAL : 11.521 656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4165 -24.1800 -11.7293 REMARK 3 T TENSOR REMARK 3 T11: 0.3421 T22: 0.3380 REMARK 3 T33: 0.2220 T12: 0.0131 REMARK 3 T13: 0.0143 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 5.4889 L22: 2.3899 REMARK 3 L33: 5.0948 L12: -0.3346 REMARK 3 L13: 2.8744 L23: -0.2697 REMARK 3 S TENSOR REMARK 3 S11: 0.7914 S12: -0.1376 S13: 0.4852 REMARK 3 S21: -0.3530 S22: -0.4844 S23: 0.4812 REMARK 3 S31: 0.9390 S32: -1.0533 S33: -0.2090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 15:21) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9771 -18.3979 -4.8324 REMARK 3 T TENSOR REMARK 3 T11: 0.6134 T22: 0.2004 REMARK 3 T33: 0.4056 T12: -0.0386 REMARK 3 T13: 0.0837 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 3.2395 L22: 1.7983 REMARK 3 L33: 4.6825 L12: 0.0655 REMARK 3 L13: -1.1666 L23: -0.7440 REMARK 3 S TENSOR REMARK 3 S11: 0.4466 S12: -0.0919 S13: 1.1351 REMARK 3 S21: 0.8974 S22: 0.0896 S23: -0.5673 REMARK 3 S31: -0.4868 S32: -0.7916 S33: -0.2623 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 22:52) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5677 -12.2961 -16.5684 REMARK 3 T TENSOR REMARK 3 T11: 0.7260 T22: 0.4187 REMARK 3 T33: 0.6919 T12: 0.0927 REMARK 3 T13: 0.3389 T23: 0.2663 REMARK 3 L TENSOR REMARK 3 L11: 1.4996 L22: 1.4540 REMARK 3 L33: 2.3185 L12: -0.9400 REMARK 3 L13: 0.1265 L23: 0.9011 REMARK 3 S TENSOR REMARK 3 S11: 0.6125 S12: 0.7497 S13: 1.2976 REMARK 3 S21: -0.7207 S22: 0.1281 S23: -0.7156 REMARK 3 S31: -1.2971 S32: 0.2702 S33: 0.2960 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 53:71) REMARK 3 ORIGIN FOR THE GROUP (A): 19.361 -16.544 -25.530 REMARK 3 T TENSOR REMARK 3 T11: 0.5036 T22: 0.5747 REMARK 3 T33: 0.3384 T12: 0.0175 REMARK 3 T13: -0.0420 T23: 0.0584 REMARK 3 L TENSOR REMARK 3 L11: 2.0201 L22: 1.2590 REMARK 3 L33: 2.6392 L12: -0.3547 REMARK 3 L13: -0.4854 L23: 0.2795 REMARK 3 S TENSOR REMARK 3 S11: 0.4765 S12: 0.6973 S13: 0.0410 REMARK 3 S21: -1.0082 S22: -0.1644 S23: 0.5029 REMARK 3 S31: 0.5582 S32: -0.8818 S33: -0.2095 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 72:107) REMARK 3 ORIGIN FOR THE GROUP (A): 24.359 -27.887 -19.519 REMARK 3 T TENSOR REMARK 3 T11: 0.3893 T22: 0.2974 REMARK 3 T33: 0.2719 T12: 0.0524 REMARK 3 T13: 0.0535 T23: 0.1310 REMARK 3 L TENSOR REMARK 3 L11: 3.9008 L22: 3.4679 REMARK 3 L33: 3.0384 L12: -2.4019 REMARK 3 L13: -1.7549 L23: -0.5858 REMARK 3 S TENSOR REMARK 3 S11: 0.2991 S12: 0.9381 S13: 0.0988 REMARK 3 S21: -0.3516 S22: -0.1347 S23: -0.0407 REMARK 3 S31: 0.0774 S32: -0.0022 S33: -0.0423 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 108:121) REMARK 3 ORIGIN FOR THE GROUP (A): 36.058 -14.261 -6.163 REMARK 3 T TENSOR REMARK 3 T11: 1.1164 T22: 0.2920 REMARK 3 T33: 0.9633 T12: -0.1035 REMARK 3 T13: 0.4230 T23: 0.1492 REMARK 3 L TENSOR REMARK 3 L11: 0.0250 L22: 0.1527 REMARK 3 L33: 1.0780 L12: -0.0653 REMARK 3 L13: 0.0984 L23: 0.4327 REMARK 3 S TENSOR REMARK 3 S11: 0.7530 S12: 0.6047 S13: 0.9154 REMARK 3 S21: -0.7364 S22: 0.4705 S23: -0.4400 REMARK 3 S31: -1.8554 S32: 0.6918 S33: -0.1039 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 1:53) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5764 -5.8625 -2.8476 REMARK 3 T TENSOR REMARK 3 T11: 0.3906 T22: 0.2090 REMARK 3 T33: 0.3347 T12: 0.0163 REMARK 3 T13: 0.0636 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.8633 L22: 4.9604 REMARK 3 L33: 2.1722 L12: -1.1066 REMARK 3 L13: -0.5823 L23: -1.2445 REMARK 3 S TENSOR REMARK 3 S11: -0.2345 S12: -0.0362 S13: -0.4637 REMARK 3 S21: -0.3135 S22: 0.1003 S23: -0.5161 REMARK 3 S31: 0.6177 S32: 0.0188 S33: 0.1517 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 57:79) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8829 8.4474 -7.6532 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.2594 REMARK 3 T33: 0.2950 T12: -0.0003 REMARK 3 T13: 0.1140 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.7646 L22: 4.1683 REMARK 3 L33: 5.5531 L12: -0.2898 REMARK 3 L13: -0.0154 L23: 1.4385 REMARK 3 S TENSOR REMARK 3 S11: -0.1230 S12: 0.3507 S13: 0.0826 REMARK 3 S21: -0.9758 S22: 0.1084 S23: -0.5631 REMARK 3 S31: 0.1694 S32: 0.0584 S33: -0.0204 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 80:107) REMARK 3 ORIGIN FOR THE GROUP (A): 10.819 5.802 -5.834 REMARK 3 T TENSOR REMARK 3 T11: 0.3139 T22: 0.1697 REMARK 3 T33: 0.2425 T12: -0.0016 REMARK 3 T13: 0.0400 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.1942 L22: 4.0865 REMARK 3 L33: 1.3928 L12: 0.1929 REMARK 3 L13: -0.4569 L23: 1.3617 REMARK 3 S TENSOR REMARK 3 S11: -0.3071 S12: -0.0163 S13: -0.1807 REMARK 3 S21: -0.3368 S22: 0.1723 S23: -0.1165 REMARK 3 S31: 0.5816 S32: -0.3301 S33: 0.0848 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 108:121) REMARK 3 ORIGIN FOR THE GROUP (A): 14.765 -12.590 5.244 REMARK 3 T TENSOR REMARK 3 T11: 0.8140 T22: 0.3515 REMARK 3 T33: 1.0409 T12: 0.1345 REMARK 3 T13: 0.2302 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 0.3430 L22: 0.6719 REMARK 3 L33: 1.7203 L12: 0.5262 REMARK 3 L13: -0.7498 L23: -0.7400 REMARK 3 S TENSOR REMARK 3 S11: -0.9647 S12: -0.0280 S13: -0.1238 REMARK 3 S21: -0.4505 S22: -0.3014 S23: -0.7644 REMARK 3 S31: 0.4640 S32: 0.2774 S33: 0.6618 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4K09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : D03B-MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.435 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13823 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.107 REMARK 200 RESOLUTION RANGE LOW (A) : 32.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG 4000, 0.25M LITHIUM REMARK 280 SULFATE, 0.1M TRIS HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.02667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.05333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.05333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.02667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 3 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ASN A 111 CG OD1 ND2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 HIS A 120 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 121 CG CD1 CD2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 VAL B 31 CG1 CG2 REMARK 470 LEU B 32 CG CD1 CD2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 GLN B 68 CG CD OE1 NE2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ASN B 87 CB CG OD1 ND2 REMARK 470 ASN B 111 CB CG OD1 ND2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS B 7 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 271 O HOH B 272 1.90 REMARK 500 O HOH B 293 O HOH B 300 1.92 REMARK 500 O HOH B 253 O HOH B 277 1.95 REMARK 500 O HOH A 236 O HOH A 255 1.97 REMARK 500 O HOH B 292 O HOH B 294 2.01 REMARK 500 O HOH A 257 O HOH A 259 2.02 REMARK 500 O HOH A 226 O HOH A 275 2.03 REMARK 500 O HOH A 220 O HOH A 226 2.05 REMARK 500 O HOH A 262 O HOH A 263 2.10 REMARK 500 O TRP B 77 O HOH B 232 2.12 REMARK 500 O HOH A 277 O HOH A 282 2.13 REMARK 500 O HOH A 270 O HOH A 283 2.14 REMARK 500 OE1 GLU B 108 O HOH B 228 2.17 REMARK 500 NZ LYS A 100 O HOH A 264 2.19 REMARK 500 O LYS B 57 O HOH B 267 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 72.30 -159.56 REMARK 500 ASP A 39 -169.22 -162.53 REMARK 500 ALA B 24 45.25 -154.69 REMARK 500 GLU B 86 130.64 -30.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 259 DISTANCE = 5.04 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q2J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PRTX-I, A PLA2 HOMOLOG FROM BOTHROPS REMARK 900 PIRAJAI REMARK 900 RELATED ID: 3I3H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTHROPSTOXIN-I REMARK 900 RELATED ID: 4K06 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY EXIST. NON REMARK 999 -SEQUENTIAL RESIDUE NUMBERING IS USED IN THIS ENTRY. MANY NUMBERS REMARK 999 WERE SIMPLY SKIPPED IN THE NUMBERING AND HAVE NOTHING TO DO WITH REMARK 999 LACK OF ELECTRON DENSITY. DBREF 4K09 A 1 133 PDB 4K09 4K09 1 133 DBREF 4K09 B 1 133 PDB 4K09 4K09 1 133 SEQRES 1 A 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 A 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 A 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 A 121 LYS LEU THR GLY CYS ASP GLN LYS LYS ASP ARG TYR SER SEQRES 6 A 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 A 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 A 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASN THR TYR ASN SEQRES 9 A 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO LEU CYS LYS LYS SEQRES 10 A 121 ALA ASP ALA CYS SEQRES 1 B 121 SER LEU PHE GLU LEU GLY LYS MET ILE LEU GLN GLU THR SEQRES 2 B 121 GLY LYS ASN PRO ALA LYS SER TYR GLY ALA TYR GLY CYS SEQRES 3 B 121 ASN CYS GLY VAL LEU GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 121 THR ASP ARG CYS CYS TYR VAL HIS LYS CYS CYS TYR LYS SEQRES 5 B 121 LYS LEU THR GLY CYS ASP GLN LYS LYS ASP ARG TYR SER SEQRES 6 B 121 TYR SER TRP LYS ASP LYS THR ILE VAL CYS GLY GLU ASN SEQRES 7 B 121 ASN PRO CYS LEU LYS GLU LEU CYS GLU CYS ASP LYS ALA SEQRES 8 B 121 VAL ALA ILE CYS LEU ARG GLU ASN LEU ASN THR TYR ASN SEQRES 9 B 121 LYS LYS TYR ARG TYR HIS LEU LYS PRO LEU CYS LYS LYS SEQRES 10 B 121 ALA ASP ALA CYS FORMUL 3 HOH *191(H2 O) HELIX 1 1 SER A 1 GLY A 15 1 14 HELIX 2 2 ASN A 17 GLY A 23 1 7 HELIX 3 3 ASP A 39 LYS A 57 1 16 HELIX 4 4 TRP A 77 THR A 81 5 5 HELIX 5 5 ASN A 88 ASN A 109 1 21 HELIX 6 6 LEU A 110 TYR A 113 5 4 HELIX 7 7 ASN A 114 ARG A 118 5 5 HELIX 8 8 LEU B 2 GLY B 15 1 13 HELIX 9 9 ASN B 17 GLY B 23 1 7 HELIX 10 10 ASP B 39 LYS B 53 1 15 HELIX 11 11 ASN B 88 ASN B 109 1 21 HELIX 12 12 LEU B 110 TYR B 113 5 4 HELIX 13 13 ASN B 114 ARG B 118 5 5 HELIX 14 14 LEU B 121 CYS B 126 5 5 SHEET 1 A 2 ALA A 24 TYR A 25 0 SHEET 2 A 2 CYS A 29 GLY A 30 -1 O CYS A 29 N TYR A 25 SHEET 1 B 2 TYR A 75 SER A 76 0 SHEET 2 B 2 VAL A 83 CYS A 84 -1 O VAL A 83 N SER A 76 SHEET 1 C 2 TYR B 75 LYS B 78 0 SHEET 2 C 2 THR B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.03 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.03 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.03 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.03 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.03 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.03 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.03 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.03 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.03 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.03 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.03 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.02 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.03 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.04 CRYST1 56.437 56.437 129.080 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017719 0.010230 0.000000 0.00000 SCALE2 0.000000 0.020460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007747 0.00000 MASTER 472 0 0 14 6 0 0 6 0 0 0 20 END