HEADER HYDROLASE 03-APR-13 4K00 TITLE CRYSTAL STRUCTURE OF SLR0204, A 1,4-DIHYDROXY-2-NAPHTHOYL-COA TITLE 2 THIOESTERASE FROM SYNECHOCYSTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,4-DIHYDROXY-2-NAPHTHOYL-COA HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHNA-COA HYDROLASE, DHNA-COA THIOESTERASE; COMPND 5 EC: 3.1.2.28; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: SLR0204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS HOTDOG FOLD, THIOESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FURT,W.J.ALLEN,J.R.WIDHALM,P.MADZELAN,R.C.RIZZO,G.BASSET,M.A.WILSON REVDAT 3 15-JAN-14 4K00 1 JRNL REVDAT 2 02-OCT-13 4K00 1 JRNL REVDAT 1 17-APR-13 4K00 0 JRNL AUTH F.FURT,W.J.ALLEN,J.R.WIDHALM,P.MADZELAN,R.C.RIZZO,G.BASSET, JRNL AUTH 2 M.A.WILSON JRNL TITL FUNCTIONAL CONVERGENCE OF STRUCTURALLY DISTINCT JRNL TITL 2 THIOESTERASES FROM CYANOBACTERIA AND PLANTS INVOLVED IN JRNL TITL 3 PHYLLOQUINONE BIOSYNTHESIS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 1876 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24100308 JRNL DOI 10.1107/S0907444913015771 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1169 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1632 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2156 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.24000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.140 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2256 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2046 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3085 ; 0.927 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4707 ; 0.604 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 7.849 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;35.113 ;24.234 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;14.170 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2625 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 557 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 137 B 3 137 7200 0.16 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4254 -36.3362 15.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0191 REMARK 3 T33: 0.0138 T12: 0.0069 REMARK 3 T13: -0.0043 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.5432 L22: 2.1005 REMARK 3 L33: 1.6251 L12: 0.6604 REMARK 3 L13: -1.0789 L23: -0.3877 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: -0.0881 S13: -0.0855 REMARK 3 S21: 0.1358 S22: 0.0145 S23: 0.0169 REMARK 3 S31: 0.0997 S32: -0.0175 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5953 -17.2559 5.2750 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.0118 REMARK 3 T33: 0.0401 T12: 0.0087 REMARK 3 T13: -0.0004 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.0153 L22: 3.8948 REMARK 3 L33: 1.9446 L12: 0.6839 REMARK 3 L13: 0.1070 L23: 0.3463 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.0402 S13: 0.1831 REMARK 3 S21: 0.0044 S22: -0.0174 S23: -0.0065 REMARK 3 S31: -0.2690 S32: -0.0410 S33: 0.0193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4K00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 10.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT GE(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23811 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2HX5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.35 M NAH2PO4/0.8 M K2HPO4, 400 MM REMARK 280 LI2SO4, 100 MM CAPS, PH 10.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.54650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.24800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.24800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.77325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.24800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.24800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 143.31975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.24800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.24800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.77325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.24800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.24800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 143.31975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 95.54650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 54.49600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -54.49600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 267 O HOH A 279 2.12 REMARK 500 OD2 ASP B 16 O HOH B 355 2.13 REMARK 500 NE2 GLN A 9 O HOH A 270 2.18 REMARK 500 O THR B 15 C2 EDO B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 52 ASP B 53 149.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 244 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 283 DISTANCE = 5.09 ANGSTROMS REMARK 525 HOH A 287 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH B 381 DISTANCE = 5.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4K02 RELATED DB: PDB DBREF 4K00 A 1 138 UNP Q55777 DNCH_SYNY3 1 138 DBREF 4K00 B 1 138 UNP Q55777 DNCH_SYNY3 1 138 SEQADV 4K00 GLY A -2 UNP Q55777 EXPRESSION TAG SEQADV 4K00 SER A -1 UNP Q55777 EXPRESSION TAG SEQADV 4K00 HIS A 0 UNP Q55777 EXPRESSION TAG SEQADV 4K00 GLY B -2 UNP Q55777 EXPRESSION TAG SEQADV 4K00 SER B -1 UNP Q55777 EXPRESSION TAG SEQADV 4K00 HIS B 0 UNP Q55777 EXPRESSION TAG SEQRES 1 A 141 GLY SER HIS MET GLY THR PHE THR TYR GLU ARG GLN VAL SEQRES 2 A 141 TYR LEU ALA ASP THR ASP GLY ALA GLY VAL VAL TYR PHE SEQRES 3 A 141 ASN GLN PHE LEU GLN MET CYS HIS GLU ALA TYR GLU SER SEQRES 4 A 141 TRP LEU SER SER GLU HIS LEU SER LEU GLN ASN ILE ILE SEQRES 5 A 141 SER VAL GLY ASP PHE ALA LEU PRO LEU VAL HIS ALA SER SEQRES 6 A 141 ILE ASP PHE PHE ALA PRO ALA HIS CYS GLY ASP ARG LEU SEQRES 7 A 141 LEU VAL ASN LEU THR ILE THR GLN ALA SER ALA HIS ARG SEQRES 8 A 141 PHE CYS CYS ASP TYR GLU ILE SER GLN ALA GLU SER ALA SEQRES 9 A 141 GLN LEU LEU ALA ARG ALA GLN THR HIS HIS VAL CYS ILE SEQRES 10 A 141 ALA LEU PRO GLU ARG LYS LYS ALA PRO LEU PRO GLN PRO SEQRES 11 A 141 TRP GLN THR ALA ILE CYS ASP LEU ASP HIS PRO SEQRES 1 B 141 GLY SER HIS MET GLY THR PHE THR TYR GLU ARG GLN VAL SEQRES 2 B 141 TYR LEU ALA ASP THR ASP GLY ALA GLY VAL VAL TYR PHE SEQRES 3 B 141 ASN GLN PHE LEU GLN MET CYS HIS GLU ALA TYR GLU SER SEQRES 4 B 141 TRP LEU SER SER GLU HIS LEU SER LEU GLN ASN ILE ILE SEQRES 5 B 141 SER VAL GLY ASP PHE ALA LEU PRO LEU VAL HIS ALA SER SEQRES 6 B 141 ILE ASP PHE PHE ALA PRO ALA HIS CYS GLY ASP ARG LEU SEQRES 7 B 141 LEU VAL ASN LEU THR ILE THR GLN ALA SER ALA HIS ARG SEQRES 8 B 141 PHE CYS CYS ASP TYR GLU ILE SER GLN ALA GLU SER ALA SEQRES 9 B 141 GLN LEU LEU ALA ARG ALA GLN THR HIS HIS VAL CYS ILE SEQRES 10 B 141 ALA LEU PRO GLU ARG LYS LYS ALA PRO LEU PRO GLN PRO SEQRES 11 B 141 TRP GLN THR ALA ILE CYS ASP LEU ASP HIS PRO HET EDO B 201 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *183(H2 O) HELIX 1 1 TYR A 11 THR A 15 5 5 HELIX 2 2 TYR A 22 GLU A 41 1 20 HELIX 3 3 SER A 44 GLY A 52 1 9 HELIX 4 4 PRO A 125 ASP A 134 1 10 HELIX 5 5 TYR B 11 THR B 15 5 5 HELIX 6 6 TYR B 22 GLU B 41 1 20 HELIX 7 7 SER B 44 GLY B 52 1 9 HELIX 8 8 PRO B 125 LEU B 135 1 11 SHEET 1 A10 THR A 3 GLN A 9 0 SHEET 2 A10 ARG A 74 GLN A 83 -1 O LEU A 75 N ARG A 8 SHEET 3 A10 ARG A 88 GLN A 97 -1 O GLU A 94 N ASN A 78 SHEET 4 A10 LEU A 103 VAL A 112 -1 O LEU A 104 N ILE A 95 SHEET 5 A10 LEU A 58 PHE A 65 -1 N ASP A 64 O ARG A 106 SHEET 6 A10 LEU B 58 PHE B 65 -1 O VAL B 59 N PHE A 65 SHEET 7 A10 LEU B 103 VAL B 112 -1 O ARG B 106 N ASP B 64 SHEET 8 A10 ARG B 88 GLN B 97 -1 N CYS B 91 O THR B 109 SHEET 9 A10 ARG B 74 GLN B 83 -1 N THR B 80 O ASP B 92 SHEET 10 A10 PHE B 4 GLN B 9 -1 N PHE B 4 O LEU B 79 SHEET 1 B 3 PHE A 54 ALA A 55 0 SHEET 2 B 3 ILE A 114 ALA A 115 -1 O ILE A 114 N ALA A 55 SHEET 3 B 3 LYS A 120 LYS A 121 -1 O LYS A 120 N ALA A 115 SHEET 1 C 3 PHE B 54 ALA B 55 0 SHEET 2 C 3 ILE B 114 ALA B 115 -1 O ILE B 114 N ALA B 55 SHEET 3 C 3 LYS B 120 LYS B 121 -1 O LYS B 120 N ALA B 115 CISPEP 1 LEU A 116 PRO A 117 0 7.68 CISPEP 2 LEU B 116 PRO B 117 0 6.03 SITE 1 AC1 3 ALA B 13 THR B 15 HOH B 337 CRYST1 54.496 54.496 191.093 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005233 0.00000 MASTER 362 0 1 8 16 0 1 6 0 0 0 22 END