HEADER OXIDOREDUCTASE 28-MAR-13 4JY2 TITLE CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID TITLE 2 OXYGENASE, NATIVE AND UNLIGANDED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC ACID OXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.12.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: MLR6788; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS FLAVOENZYME, FAD BINDING MOTIF, OXIDOREDUCTASE, 3-HYDROXYPYRIDINE-5- KEYWDS 2 CARBOXYLIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR J.KOBAYASHI,H.YOSHIDA,S.KAMITORI,H.HAYASHI,K.MIZUTANI,N.TAKAHASHI, AUTHOR 2 B.MIKAMI,T.YAGI REVDAT 1 02-APR-14 4JY2 0 SPRSDE 02-APR-14 4JY2 3ALH JRNL AUTH J.KOBAYASHI,H.YOSHIDA,S.KAMITORI,H.HAYASHI,K.MIZUTANI, JRNL AUTH 2 N.TAKAHASHI,B.MIKAMI,T.YAGI JRNL TITL CRYSTAL STRUCTURE OF 2-METHYL-3-HYDROXYPYRIDINE-5-CARBOXYLIC JRNL TITL 2 ACID OXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 78588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3955 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0825 - 5.8724 1.00 2726 150 0.1765 0.1845 REMARK 3 2 5.8724 - 4.6622 1.00 2691 143 0.1490 0.1815 REMARK 3 3 4.6622 - 4.0732 1.00 2687 143 0.1412 0.1646 REMARK 3 4 4.0732 - 3.7010 1.00 2690 124 0.1526 0.1890 REMARK 3 5 3.7010 - 3.4358 1.00 2685 136 0.1597 0.1735 REMARK 3 6 3.4358 - 3.2332 1.00 2702 143 0.1670 0.1953 REMARK 3 7 3.2332 - 3.0713 1.00 2669 137 0.1754 0.2099 REMARK 3 8 3.0713 - 2.9377 1.00 2660 146 0.1730 0.2037 REMARK 3 9 2.9377 - 2.8246 1.00 2686 144 0.1808 0.2208 REMARK 3 10 2.8246 - 2.7271 1.00 2676 142 0.1764 0.2000 REMARK 3 11 2.7271 - 2.6419 1.00 2684 146 0.1732 0.2095 REMARK 3 12 2.6419 - 2.5663 1.00 2629 140 0.1717 0.2145 REMARK 3 13 2.5663 - 2.4988 1.00 2678 154 0.1762 0.2017 REMARK 3 14 2.4988 - 2.4378 1.00 2663 151 0.1710 0.2207 REMARK 3 15 2.4378 - 2.3824 1.00 2694 133 0.1676 0.1874 REMARK 3 16 2.3824 - 2.3317 1.00 2684 142 0.1643 0.2020 REMARK 3 17 2.3317 - 2.2851 1.00 2640 119 0.1650 0.2076 REMARK 3 18 2.2851 - 2.2419 1.00 2699 131 0.1645 0.2079 REMARK 3 19 2.2419 - 2.2019 1.00 2641 165 0.1657 0.2051 REMARK 3 20 2.2019 - 2.1646 1.00 2653 142 0.1649 0.2275 REMARK 3 21 2.1646 - 2.1297 1.00 2629 154 0.1761 0.2257 REMARK 3 22 2.1297 - 2.0969 1.00 2717 145 0.1747 0.2025 REMARK 3 23 2.0969 - 2.0661 1.00 2649 160 0.1766 0.2504 REMARK 3 24 2.0661 - 2.0370 1.00 2667 119 0.1815 0.2004 REMARK 3 25 2.0370 - 2.0094 1.00 2696 134 0.1838 0.2206 REMARK 3 26 2.0094 - 1.9833 1.00 2617 143 0.1845 0.2013 REMARK 3 27 1.9833 - 1.9585 1.00 2673 140 0.1913 0.2644 REMARK 3 28 1.9585 - 1.9349 0.92 2448 129 0.1958 0.2443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6177 REMARK 3 ANGLE : 1.416 8405 REMARK 3 CHIRALITY : 0.080 905 REMARK 3 PLANARITY : 0.005 1066 REMARK 3 DIHEDRAL : 13.346 2271 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JY2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-13. REMARK 100 THE RCSB ID CODE IS RCSB078648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78611 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.935 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 8% PEG 8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.36900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.68200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.36900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 64.68200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS TETRAMER, BUT SPECIFIC INTERACTION FOR REMARK 300 FORMING TETRAMER IS NOT OBSERVED. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 713 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 710 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 711 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 712 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 GLY A 9 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASN B 3 REMARK 465 VAL B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 THR B 7 REMARK 465 PRO B 8 REMARK 465 GLY B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 41 O3B FAD A 401 2.18 REMARK 500 OE1 GLU B 41 O3B FAD B 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -77.77 69.54 REMARK 500 SER A 160 111.30 -37.01 REMARK 500 GLU A 195 70.21 -117.14 REMARK 500 ASN A 218 -172.63 177.01 REMARK 500 HIS A 291 36.91 -152.71 REMARK 500 ALA B 51 -78.34 70.65 REMARK 500 GLU B 195 70.68 -116.94 REMARK 500 ASN B 218 -170.42 179.90 REMARK 500 HIS B 291 38.91 -151.57 REMARK 500 TRP B 377 66.17 39.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JY3 RELATED DB: PDB REMARK 900 5-PYRIDOXIC ACID BOUND FORM DBREF 4JY2 A 1 379 UNP Q988D3 Q988D3_RHILO 1 379 DBREF 4JY2 B 1 379 UNP Q988D3 Q988D3_RHILO 1 379 SEQRES 1 A 379 MET ALA ASN VAL ASN LYS THR PRO GLY LYS THR ARG ARG SEQRES 2 A 379 ALA GLU VAL ALA GLY GLY GLY PHE ALA GLY LEU THR ALA SEQRES 3 A 379 ALA ILE ALA LEU LYS GLN ASN GLY TRP ASP VAL ARG LEU SEQRES 4 A 379 HIS GLU LYS SER SER GLU LEU ARG ALA PHE GLY ALA GLY SEQRES 5 A 379 ILE TYR LEU TRP HIS ASN GLY LEU ARG VAL LEU GLU GLY SEQRES 6 A 379 LEU GLY ALA LEU ASP ASP VAL LEU GLN GLY SER HIS THR SEQRES 7 A 379 PRO PRO THR TYR GLU THR TRP MET HIS ASN LYS SER VAL SEQRES 8 A 379 SER LYS GLU THR PHE ASN GLY LEU PRO TRP ARG ILE MET SEQRES 9 A 379 THR ARG SER HIS LEU HIS ASP ALA LEU VAL ASN ARG ALA SEQRES 10 A 379 ARG ALA LEU GLY VAL ASP ILE SER VAL ASN SER GLU ALA SEQRES 11 A 379 VAL ALA ALA ASP PRO VAL GLY ARG LEU THR LEU GLN THR SEQRES 12 A 379 GLY GLU VAL LEU GLU ALA ASP LEU ILE VAL GLY ALA ASP SEQRES 13 A 379 GLY VAL GLY SER LYS VAL ARG ASP SER ILE GLY PHE LYS SEQRES 14 A 379 GLN ASP ARG TRP VAL SER LYS ASP GLY LEU ILE ARG LEU SEQRES 15 A 379 ILE VAL PRO ARG MET LYS LYS GLU LEU GLY HIS GLY GLU SEQRES 16 A 379 TRP ASP ASN THR ILE ASP MET TRP ASN PHE TRP PRO ARG SEQRES 17 A 379 VAL GLN ARG ILE LEU TYR SER PRO CYS ASN GLU ASN GLU SEQRES 18 A 379 LEU TYR LEU GLY LEU MET ALA PRO ALA ALA ASP PRO ARG SEQRES 19 A 379 GLY SER SER VAL PRO ILE ASP LEU GLU VAL TRP VAL GLU SEQRES 20 A 379 MET PHE PRO PHE LEU GLU PRO CYS LEU ILE GLU ALA ALA SEQRES 21 A 379 LYS LEU LYS THR ALA ARG TYR ASP LYS TYR GLU THR THR SEQRES 22 A 379 LYS LEU ASP SER TRP THR ARG GLY LYS VAL ALA LEU VAL SEQRES 23 A 379 GLY ASP ALA ALA HIS ALA MET CYS PRO ALA LEU ALA GLN SEQRES 24 A 379 GLY ALA GLY CYS ALA MET VAL ASN ALA PHE SER LEU SER SEQRES 25 A 379 GLN ASP LEU GLU GLU GLY SER SER VAL GLU ASP ALA LEU SEQRES 26 A 379 VAL ALA TRP GLU THR ARG ILE ARG PRO ILE THR ASP ARG SEQRES 27 A 379 CYS GLN ALA LEU SER GLY ASP TYR ALA ALA ASN ARG SER SEQRES 28 A 379 LEU SER LYS GLY ASN MET PHE THR PRO ALA ALA LEU GLU SEQRES 29 A 379 ALA ALA ARG TYR ASP PRO LEU ARG ARG VAL TYR SER TRP SEQRES 30 A 379 PRO GLN SEQRES 1 B 379 MET ALA ASN VAL ASN LYS THR PRO GLY LYS THR ARG ARG SEQRES 2 B 379 ALA GLU VAL ALA GLY GLY GLY PHE ALA GLY LEU THR ALA SEQRES 3 B 379 ALA ILE ALA LEU LYS GLN ASN GLY TRP ASP VAL ARG LEU SEQRES 4 B 379 HIS GLU LYS SER SER GLU LEU ARG ALA PHE GLY ALA GLY SEQRES 5 B 379 ILE TYR LEU TRP HIS ASN GLY LEU ARG VAL LEU GLU GLY SEQRES 6 B 379 LEU GLY ALA LEU ASP ASP VAL LEU GLN GLY SER HIS THR SEQRES 7 B 379 PRO PRO THR TYR GLU THR TRP MET HIS ASN LYS SER VAL SEQRES 8 B 379 SER LYS GLU THR PHE ASN GLY LEU PRO TRP ARG ILE MET SEQRES 9 B 379 THR ARG SER HIS LEU HIS ASP ALA LEU VAL ASN ARG ALA SEQRES 10 B 379 ARG ALA LEU GLY VAL ASP ILE SER VAL ASN SER GLU ALA SEQRES 11 B 379 VAL ALA ALA ASP PRO VAL GLY ARG LEU THR LEU GLN THR SEQRES 12 B 379 GLY GLU VAL LEU GLU ALA ASP LEU ILE VAL GLY ALA ASP SEQRES 13 B 379 GLY VAL GLY SER LYS VAL ARG ASP SER ILE GLY PHE LYS SEQRES 14 B 379 GLN ASP ARG TRP VAL SER LYS ASP GLY LEU ILE ARG LEU SEQRES 15 B 379 ILE VAL PRO ARG MET LYS LYS GLU LEU GLY HIS GLY GLU SEQRES 16 B 379 TRP ASP ASN THR ILE ASP MET TRP ASN PHE TRP PRO ARG SEQRES 17 B 379 VAL GLN ARG ILE LEU TYR SER PRO CYS ASN GLU ASN GLU SEQRES 18 B 379 LEU TYR LEU GLY LEU MET ALA PRO ALA ALA ASP PRO ARG SEQRES 19 B 379 GLY SER SER VAL PRO ILE ASP LEU GLU VAL TRP VAL GLU SEQRES 20 B 379 MET PHE PRO PHE LEU GLU PRO CYS LEU ILE GLU ALA ALA SEQRES 21 B 379 LYS LEU LYS THR ALA ARG TYR ASP LYS TYR GLU THR THR SEQRES 22 B 379 LYS LEU ASP SER TRP THR ARG GLY LYS VAL ALA LEU VAL SEQRES 23 B 379 GLY ASP ALA ALA HIS ALA MET CYS PRO ALA LEU ALA GLN SEQRES 24 B 379 GLY ALA GLY CYS ALA MET VAL ASN ALA PHE SER LEU SER SEQRES 25 B 379 GLN ASP LEU GLU GLU GLY SER SER VAL GLU ASP ALA LEU SEQRES 26 B 379 VAL ALA TRP GLU THR ARG ILE ARG PRO ILE THR ASP ARG SEQRES 27 B 379 CYS GLN ALA LEU SER GLY ASP TYR ALA ALA ASN ARG SER SEQRES 28 B 379 LEU SER LYS GLY ASN MET PHE THR PRO ALA ALA LEU GLU SEQRES 29 B 379 ALA ALA ARG TYR ASP PRO LEU ARG ARG VAL TYR SER TRP SEQRES 30 B 379 PRO GLN HET FAD A 401 53 HET BME A 402 4 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET FAD B 401 53 HET BME B 402 4 HET GOL B 403 12 HET GOL B 404 6 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM BME BETA-MERCAPTOETHANOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 BME 2(C2 H6 O S) FORMUL 5 GOL 11(C3 H8 O3) FORMUL 18 HOH *637(H2 O) HELIX 1 1 GLY A 20 ASN A 33 1 14 HELIX 2 2 HIS A 57 LEU A 66 1 10 HELIX 3 3 ALA A 68 GLN A 74 1 7 HELIX 4 4 THR A 95 LEU A 99 5 5 HELIX 5 5 ARG A 106 LEU A 120 1 15 HELIX 6 6 SER A 160 GLY A 167 1 8 HELIX 7 7 LYS A 188 GLY A 192 5 5 HELIX 8 8 ASP A 241 PHE A 249 1 9 HELIX 9 9 LEU A 252 ALA A 260 1 9 HELIX 10 10 GLY A 287 ALA A 292 1 6 HELIX 11 11 GLN A 299 LEU A 315 1 17 HELIX 12 12 SER A 320 ARG A 350 1 31 HELIX 13 13 SER A 351 GLY A 355 5 5 HELIX 14 14 LEU A 363 ARG A 367 1 5 HELIX 15 15 GLY B 20 ASN B 33 1 14 HELIX 16 16 HIS B 57 LEU B 66 1 10 HELIX 17 17 ALA B 68 GLN B 74 1 7 HELIX 18 18 THR B 95 LEU B 99 5 5 HELIX 19 19 ARG B 106 LEU B 120 1 15 HELIX 20 20 SER B 160 SER B 165 1 6 HELIX 21 21 LYS B 188 GLY B 192 5 5 HELIX 22 22 ASP B 241 PHE B 249 1 9 HELIX 23 23 LEU B 252 ALA B 260 1 9 HELIX 24 24 GLY B 287 ALA B 292 1 6 HELIX 25 25 GLN B 299 LEU B 315 1 17 HELIX 26 26 SER B 320 ARG B 350 1 31 HELIX 27 27 SER B 351 GLY B 355 5 5 HELIX 28 28 LEU B 363 ARG B 367 1 5 SHEET 1 A 6 ASP A 123 SER A 125 0 SHEET 2 A 6 ASP A 36 HIS A 40 1 N LEU A 39 O ASP A 123 SHEET 3 A 6 ARG A 13 ALA A 17 1 N VAL A 16 O HIS A 40 SHEET 4 A 6 LEU A 151 GLY A 154 1 O VAL A 153 N ALA A 17 SHEET 5 A 6 VAL A 283 LEU A 285 1 O ALA A 284 N GLY A 154 SHEET 6 A 6 THR A 279 ARG A 280 -1 N ARG A 280 O VAL A 283 SHEET 1 B 2 GLY A 52 TRP A 56 0 SHEET 2 B 2 TRP A 101 THR A 105 -1 O ARG A 102 N LEU A 55 SHEET 1 C 7 LYS A 89 GLU A 94 0 SHEET 2 C 7 TYR A 82 MET A 86 -1 N THR A 84 O VAL A 91 SHEET 3 C 7 THR A 199 TRP A 203 1 O ASP A 201 N TRP A 85 SHEET 4 C 7 ARG A 211 PRO A 216 -1 O ILE A 212 N MET A 202 SHEET 5 C 7 GLU A 221 ALA A 228 -1 O MET A 227 N ARG A 211 SHEET 6 C 7 GLY A 178 PRO A 185 -1 N VAL A 184 O LEU A 222 SHEET 7 C 7 TYR A 267 ASP A 268 -1 O ASP A 268 N LEU A 179 SHEET 1 D 3 ALA A 130 ASP A 134 0 SHEET 2 D 3 ARG A 138 LEU A 141 -1 O ARG A 138 N ASP A 134 SHEET 3 D 3 VAL A 146 GLU A 148 -1 O LEU A 147 N LEU A 139 SHEET 1 E 2 GLN A 170 VAL A 174 0 SHEET 2 E 2 GLU A 271 LEU A 275 -1 O LYS A 274 N ASP A 171 SHEET 1 F 2 TYR A 368 ASP A 369 0 SHEET 2 F 2 VAL A 374 TYR A 375 -1 O VAL A 374 N ASP A 369 SHEET 1 G 6 ASP B 123 SER B 125 0 SHEET 2 G 6 ASP B 36 HIS B 40 1 N LEU B 39 O ASP B 123 SHEET 3 G 6 ARG B 13 ALA B 17 1 N VAL B 16 O HIS B 40 SHEET 4 G 6 LEU B 151 GLY B 154 1 O VAL B 153 N ALA B 17 SHEET 5 G 6 VAL B 283 LEU B 285 1 O ALA B 284 N GLY B 154 SHEET 6 G 6 THR B 279 ARG B 280 -1 N ARG B 280 O VAL B 283 SHEET 1 H 2 GLY B 52 TRP B 56 0 SHEET 2 H 2 TRP B 101 THR B 105 -1 O MET B 104 N ILE B 53 SHEET 1 I 7 LYS B 89 GLU B 94 0 SHEET 2 I 7 TYR B 82 MET B 86 -1 N THR B 84 O VAL B 91 SHEET 3 I 7 THR B 199 TRP B 203 1 O THR B 199 N GLU B 83 SHEET 4 I 7 ARG B 211 PRO B 216 -1 O ILE B 212 N MET B 202 SHEET 5 I 7 GLU B 221 ALA B 228 -1 O MET B 227 N ARG B 211 SHEET 6 I 7 GLY B 178 PRO B 185 -1 N ILE B 180 O LEU B 226 SHEET 7 I 7 TYR B 267 ASP B 268 -1 O ASP B 268 N LEU B 179 SHEET 1 J 3 ALA B 130 ASP B 134 0 SHEET 2 J 3 ARG B 138 LEU B 141 -1 O THR B 140 N ALA B 132 SHEET 3 J 3 VAL B 146 GLU B 148 -1 O LEU B 147 N LEU B 139 SHEET 1 K 2 GLN B 170 VAL B 174 0 SHEET 2 K 2 GLU B 271 LEU B 275 -1 O LYS B 274 N ASP B 171 SHEET 1 L 2 TYR B 368 ASP B 369 0 SHEET 2 L 2 VAL B 374 TYR B 375 -1 O VAL B 374 N ASP B 369 LINK SG CYS A 294 S2 BME A 402 1555 1555 1.98 LINK SG CYS B 294 S2 BME B 402 1555 1555 1.99 CISPEP 1 TRP A 206 PRO A 207 0 1.54 CISPEP 2 VAL A 238 PRO A 239 0 -8.02 CISPEP 3 TRP B 206 PRO B 207 0 1.44 CISPEP 4 VAL B 238 PRO B 239 0 -5.50 SITE 1 AC1 34 GLY A 18 GLY A 19 GLY A 20 PHE A 21 SITE 2 AC1 34 ALA A 22 HIS A 40 GLU A 41 LYS A 42 SITE 3 AC1 34 ILE A 53 TYR A 54 ARG A 106 SER A 128 SITE 4 AC1 34 GLU A 129 ALA A 130 ALA A 155 ASP A 156 SITE 5 AC1 34 LEU A 179 ARG A 181 GLY A 287 ASP A 288 SITE 6 AC1 34 ALA A 298 GLY A 300 ALA A 301 GLY A 302 SITE 7 AC1 34 HOH A 501 HOH A 522 HOH A 524 HOH A 553 SITE 8 AC1 34 HOH A 586 HOH A 594 HOH A 618 HOH A 629 SITE 9 AC1 34 HOH A 772 HOH A 775 SITE 1 AC2 6 TRP A 173 TYR A 270 THR A 272 CYS A 294 SITE 2 AC2 6 ALA A 347 HOH A 759 SITE 1 AC3 7 THR A 95 PHE A 96 ASN A 97 HOH A 576 SITE 2 AC3 7 HOH A 589 HOH A 642 HOH A 723 SITE 1 AC4 8 GLN A 74 GLY A 75 SER A 76 ASN A 97 SITE 2 AC4 8 PRO A 378 HOH A 509 HOH A 628 HOH A 745 SITE 1 AC5 3 GLU A 364 ARG A 367 TYR A 375 SITE 1 AC6 4 ASP A 36 VAL A 37 ARG A 38 HOH A 684 SITE 1 AC7 3 ALA A 231 ASP B 134 VAL B 136 SITE 1 AC8 8 TYR A 82 ARG A 211 PRO A 295 ALA A 296 SITE 2 AC8 8 ALA A 298 HOH A 594 HOH A 823 HOH A 824 SITE 1 AC9 36 GLY B 18 GLY B 19 GLY B 20 PHE B 21 SITE 2 AC9 36 ALA B 22 HIS B 40 GLU B 41 LYS B 42 SITE 3 AC9 36 ILE B 53 TYR B 54 ARG B 106 SER B 128 SITE 4 AC9 36 GLU B 129 ALA B 130 ALA B 155 ASP B 156 SITE 5 AC9 36 LEU B 179 ARG B 181 GLY B 287 ASP B 288 SITE 6 AC9 36 ALA B 298 GLY B 300 ALA B 301 GLY B 302 SITE 7 AC9 36 HOH B 501 HOH B 513 HOH B 554 HOH B 561 SITE 8 AC9 36 HOH B 568 HOH B 625 HOH B 640 HOH B 661 SITE 9 AC9 36 HOH B 707 HOH B 759 HOH B 762 HOH B 763 SITE 1 BC1 5 TRP B 173 TYR B 270 THR B 272 CYS B 294 SITE 2 BC1 5 ALA B 347 SITE 1 BC2 11 LEU B 73 GLN B 74 GLY B 75 SER B 76 SITE 2 BC2 11 ASN B 97 ARG B 102 PRO B 378 HOH B 540 SITE 3 BC2 11 HOH B 569 HOH B 663 HOH B 744 SITE 1 BC3 6 HOH A 530 LYS B 42 ASN B 127 GLU B 129 SITE 2 BC3 6 GLN B 142 HOH B 541 SITE 1 BC4 7 THR B 95 PHE B 96 ASN B 97 HOH B 598 SITE 2 BC4 7 HOH B 654 HOH B 666 HOH B 734 SITE 1 BC5 7 TRP B 203 ARG B 211 MET B 227 HOH B 567 SITE 2 BC5 7 HOH B 632 HOH B 677 HOH B 696 SITE 1 BC6 2 ARG B 367 TYR B 375 CRYST1 110.738 129.364 89.302 90.00 122.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009030 0.000000 0.005755 0.00000 SCALE2 0.000000 0.007730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013279 0.00000 MASTER 367 0 15 28 44 0 41 6 0 0 0 60 END