HEADER HYDROLASE 19-MAR-13 4JP8 TITLE CRYSTAL STRUCTURE OF PRO-F17H/S324A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TK-SUBTILISIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-422; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: ATCC BAA-918 / JCM 12380 / KOD1; SOURCE 5 GENE: TK1675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SUBTILISIN-LIKE SERINE PROTEASE, HYDROLASE, SUBTILLISIN, THERMOCOCCUS KEYWDS 2 KODAKARENSIS EXPDTA X-RAY DIFFRACTION AUTHOR K.YUZAKI,D.J.YOU,R.UEHARA,Y.KOGA,S.KANAYA REVDAT 2 15-NOV-17 4JP8 1 REMARK REVDAT 1 29-JAN-14 4JP8 0 JRNL AUTH K.YUZAKI,Y.SANDA,D.J.YOU,R.UEHARA,Y.KOGA,S.KANAYA JRNL TITL INCREASE IN ACTIVATION RATE OF PRO-TK-SUBTILISIN BY A SINGLE JRNL TITL 2 NONPOLAR-TO-POLAR AMINO ACID SUBSTITUTION AT THE HYDROPHOBIC JRNL TITL 3 CORE OF THE PROPEPTIDE DOMAIN JRNL REF PROTEIN SCI. V. 22 1711 2013 JRNL REFN ISSN 0961-8368 JRNL PMID 24115021 JRNL DOI 10.1002/PRO.2371 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.27 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1463 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.43000 REMARK 3 B22 (A**2) : -4.42000 REMARK 3 B33 (A**2) : -4.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.423 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2955 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4045 ; 0.980 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 394 ; 8.612 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;38.001 ;25.439 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;21.337 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 470 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2261 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1954 ; 1.238 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3146 ; 2.203 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1001 ; 3.768 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 899 ; 5.283 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-13. REMARK 100 THE DEPOSITION ID IS D_1000078330. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : HORIZONTAL FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6500 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22172 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 17.70 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 15.70 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, DM 6.1 REMARK 200 STARTING MODEL: 2E1P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS-HCL PH7.0, 4M SODIUM FORMATE REMARK 280 , VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.24900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.11100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.24900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.11100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.24900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.11100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.66150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.24900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.11100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MATTHEWS COEFFICIENT AND THE SOLVENT CONTENT: REMARK 300 SOLVENT CONTENT, VS (%): 53.91 REMARK 300 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 210 CA CA A 702 1.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 115 -165.17 -173.27 REMARK 500 ASN A 166 -170.44 -171.30 REMARK 500 ALA A 211 -78.05 -61.09 REMARK 500 ASP A 212 70.04 -114.55 REMARK 500 ILE A 219 -85.76 -128.48 REMARK 500 VAL A 230 106.22 -170.17 REMARK 500 ASP A 315 72.17 55.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 225 OD2 REMARK 620 2 ILE A 218 O 89.3 REMARK 620 3 ASP A 214 OD2 66.7 147.1 REMARK 620 4 ASP A 216 OD1 175.8 89.6 115.8 REMARK 620 5 ASP A 214 OD1 74.8 140.3 56.9 103.6 REMARK 620 6 ASP A 212 OD1 100.8 99.2 65.8 83.3 119.3 REMARK 620 7 ASP A 222 OD1 91.0 95.9 106.3 85.1 49.5 161.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 108 O REMARK 620 2 ALA A 227 O 159.4 REMARK 620 3 GLN A 110 OE1 86.0 79.5 REMARK 620 4 GLU A 229 OE1 91.9 92.4 147.3 REMARK 620 5 GLU A 229 OE2 76.2 89.8 92.4 55.6 REMARK 620 6 HOH A 803 O 117.4 81.6 149.5 56.9 111.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 704 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 222 OD1 REMARK 620 2 ASP A 224 OD2 120.0 REMARK 620 3 ASP A 216 OD2 71.5 167.4 REMARK 620 4 ASP A 214 OD1 53.9 98.0 84.9 REMARK 620 5 ASP A 222 OD2 49.3 73.0 119.4 71.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 168 O REMARK 620 2 LEU A 164 O 164.0 REMARK 620 3 GLN A 84 OE1 92.9 78.6 REMARK 620 4 ASP A 124 OD1 96.4 85.5 151.6 REMARK 620 5 ASP A 124 OD2 86.2 107.0 157.4 50.5 REMARK 620 6 VAL A 170 O 115.0 79.5 95.2 105.0 65.2 REMARK 620 7 ASN A 166 OD1 72.6 93.7 89.8 67.8 111.3 170.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 226 OD2 REMARK 620 2 LEU A 205 O 86.2 REMARK 620 3 ASP A 208 OD1 81.7 75.0 REMARK 620 4 ALA A 211 O 139.4 117.9 133.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 706 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 PRO A 375 O 96.4 REMARK 620 3 LEU A 373 O 84.0 88.7 REMARK 620 4 GLY A 377 O 99.8 81.1 169.4 REMARK 620 5 ASP A 379 OD1 151.0 98.2 71.5 107.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 706 DBREF 4JP8 A 1 398 UNP P58502 TKSU_PYRKO 25 422 SEQADV 4JP8 HIS A 17 UNP P58502 PHE 41 ENGINEERED MUTATION SEQADV 4JP8 ALA A 324 UNP P58502 SER 348 ENGINEERED MUTATION SEQRES 1 A 398 GLY GLU GLN ASN THR ILE ARG VAL ILE VAL SER VAL ASP SEQRES 2 A 398 LYS ALA LYS HIS ASN PRO HIS GLU VAL LEU GLY ILE GLY SEQRES 3 A 398 GLY HIS ILE VAL TYR GLN PHE LYS LEU ILE PRO ALA VAL SEQRES 4 A 398 VAL VAL ASP VAL PRO ALA ASN ALA VAL GLY LYS LEU LYS SEQRES 5 A 398 LYS MET PRO GLY VAL GLU LYS VAL GLU PHE ASP HIS GLN SEQRES 6 A 398 ALA VAL LEU LEU GLY LYS PRO SER TRP LEU GLY GLY GLY SEQRES 7 A 398 SER THR GLN PRO ALA GLN THR ILE PRO TRP GLY ILE GLU SEQRES 8 A 398 ARG VAL LYS ALA PRO SER VAL TRP SER ILE THR ASP GLY SEQRES 9 A 398 SER VAL SER VAL ILE GLN VAL ALA VAL LEU ASP THR GLY SEQRES 10 A 398 VAL ASP TYR ASP HIS PRO ASP LEU ALA ALA ASN ILE ALA SEQRES 11 A 398 TRP CYS VAL SER THR LEU ARG GLY LYS VAL SER THR LYS SEQRES 12 A 398 LEU ARG ASP CYS ALA ASP GLN ASN GLY HIS GLY THR HIS SEQRES 13 A 398 VAL ILE GLY THR ILE ALA ALA LEU ASN ASN ASP ILE GLY SEQRES 14 A 398 VAL VAL GLY VAL ALA PRO GLY VAL GLN ILE TYR SER VAL SEQRES 15 A 398 ARG VAL LEU ASP ALA ARG GLY SER GLY SER TYR SER ASP SEQRES 16 A 398 ILE ALA ILE GLY ILE GLU GLN ALA ILE LEU GLY PRO ASP SEQRES 17 A 398 GLY VAL ALA ASP LYS ASP GLY ASP GLY ILE ILE ALA GLY SEQRES 18 A 398 ASP PRO ASP ASP ASP ALA ALA GLU VAL ILE SER MET SER SEQRES 19 A 398 LEU GLY GLY PRO ALA ASP ASP SER TYR LEU TYR ASP MET SEQRES 20 A 398 ILE ILE GLN ALA TYR ASN ALA GLY ILE VAL ILE VAL ALA SEQRES 21 A 398 ALA SER GLY ASN GLU GLY ALA PRO SER PRO SER TYR PRO SEQRES 22 A 398 ALA ALA TYR PRO GLU VAL ILE ALA VAL GLY ALA ILE ASP SEQRES 23 A 398 SER ASN ASP ASN ILE ALA SER PHE SER ASN ARG GLN PRO SEQRES 24 A 398 GLU VAL SER ALA PRO GLY VAL ASP ILE LEU SER THR TYR SEQRES 25 A 398 PRO ASP ASP SER TYR GLU THR LEU MET GLY THR ALA MET SEQRES 26 A 398 ALA THR PRO HIS VAL SER GLY VAL VAL ALA LEU ILE GLN SEQRES 27 A 398 ALA ALA TYR TYR GLN LYS TYR GLY LYS ILE LEU PRO VAL SEQRES 28 A 398 GLY THR PHE ASP ASP ILE SER LYS ASN THR VAL ARG GLY SEQRES 29 A 398 ILE LEU HIS ILE THR ALA ASP ASP LEU GLY PRO THR GLY SEQRES 30 A 398 TRP ASP ALA ASP TYR GLY TYR GLY VAL VAL ARG ALA ALA SEQRES 31 A 398 LEU ALA VAL GLN ALA ALA LEU GLY HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET CA A 705 1 HET CA A 706 1 HETNAM CA CALCIUM ION FORMUL 2 CA 6(CA 2+) FORMUL 8 HOH *79(H2 O) HELIX 1 1 PRO A 19 ILE A 25 1 7 HELIX 2 2 PRO A 44 ASN A 46 5 3 HELIX 3 3 ALA A 47 MET A 54 1 8 HELIX 4 4 PRO A 87 VAL A 93 1 7 HELIX 5 5 ALA A 95 ILE A 101 5 7 HELIX 6 6 LEU A 125 ALA A 127 5 3 HELIX 7 7 LEU A 136 LYS A 139 5 4 HELIX 8 8 LYS A 143 ALA A 148 1 6 HELIX 9 9 GLY A 152 ALA A 163 1 12 HELIX 10 10 TYR A 193 GLY A 206 1 14 HELIX 11 11 ASP A 241 ALA A 254 1 14 HELIX 12 12 GLY A 322 TYR A 345 1 24 HELIX 13 13 THR A 361 ALA A 370 1 10 HELIX 14 14 ARG A 388 GLY A 398 1 11 SHEET 1 A 4 HIS A 28 GLN A 32 0 SHEET 2 A 4 ALA A 38 VAL A 43 -1 O VAL A 40 N VAL A 30 SHEET 3 A 4 ILE A 6 VAL A 12 -1 N VAL A 10 O VAL A 39 SHEET 4 A 4 VAL A 57 PHE A 62 -1 O GLU A 61 N ILE A 9 SHEET 1 B 3 SER A 190 SER A 192 0 SHEET 2 B 3 GLN A 65 LEU A 68 -1 N ALA A 66 O GLY A 191 SHEET 3 B 3 LEU A 235 GLY A 236 -1 O GLY A 236 N VAL A 67 SHEET 1 C 3 LYS A 71 PRO A 72 0 SHEET 2 C 3 SER A 316 MET A 321 -1 O MET A 321 N LYS A 71 SHEET 3 C 3 ILE A 308 TYR A 312 -1 N TYR A 312 O SER A 316 SHEET 1 D 7 ILE A 129 SER A 134 0 SHEET 2 D 7 GLN A 178 ARG A 183 1 O ARG A 183 N VAL A 133 SHEET 3 D 7 GLN A 110 ASP A 115 1 N VAL A 111 O GLN A 178 SHEET 4 D 7 VAL A 230 MET A 233 1 O SER A 232 N ALA A 112 SHEET 5 D 7 VAL A 257 ALA A 261 1 O VAL A 259 N MET A 233 SHEET 6 D 7 ILE A 280 ILE A 285 1 O ILE A 280 N ILE A 258 SHEET 7 D 7 VAL A 301 PRO A 304 1 O VAL A 301 N GLY A 283 LINK OD2 ASP A 225 CA CA A 703 1555 1555 1.87 LINK O VAL A 108 CA CA A 705 1555 1555 1.94 LINK O ALA A 227 CA CA A 705 1555 1555 1.96 LINK O ILE A 218 CA CA A 703 1555 1555 2.01 LINK OD1 ASP A 222 CA CA A 704 1555 1555 2.02 LINK O ILE A 168 CA CA A 701 1555 1555 2.06 LINK OE1 GLN A 110 CA CA A 705 1555 1555 2.10 LINK OD2 ASP A 214 CA CA A 703 1555 1555 2.13 LINK OD2 ASP A 226 CA CA A 702 1555 1555 2.14 LINK OD1 ASP A 372 CA CA A 706 1555 1555 2.17 LINK OE1 GLU A 229 CA CA A 705 1555 1555 2.18 LINK O LEU A 164 CA CA A 701 1555 1555 2.22 LINK O PRO A 375 CA CA A 706 1555 1555 2.24 LINK OD1 ASP A 216 CA CA A 703 1555 1555 2.24 LINK O LEU A 373 CA CA A 706 1555 1555 2.34 LINK O GLY A 377 CA CA A 706 1555 1555 2.36 LINK OE1 GLN A 84 CA CA A 701 1555 1555 2.38 LINK OD1 ASP A 124 CA CA A 701 1555 1555 2.40 LINK OD2 ASP A 224 CA CA A 704 1555 1555 2.44 LINK OD1 ASP A 214 CA CA A 703 1555 1555 2.45 LINK O LEU A 205 CA CA A 702 1555 1555 2.49 LINK OE2 GLU A 229 CA CA A 705 1555 1555 2.50 LINK OD2 ASP A 124 CA CA A 701 1555 1555 2.53 LINK OD2 ASP A 216 CA CA A 704 1555 1555 2.55 LINK O VAL A 170 CA CA A 701 1555 1555 2.56 LINK CA CA A 705 O HOH A 803 1555 1555 2.61 LINK OD1 ASP A 214 CA CA A 704 1555 1555 2.68 LINK OD1 ASP A 208 CA CA A 702 1555 1555 2.72 LINK OD1 ASP A 212 CA CA A 703 1555 1555 2.73 LINK OD1 ASP A 222 CA CA A 703 1555 1555 2.78 LINK OD1 ASN A 166 CA CA A 701 1555 1555 2.80 LINK OD2 ASP A 222 CA CA A 704 1555 1555 2.82 LINK OD1 ASP A 379 CA CA A 706 1555 1555 2.98 LINK O ALA A 211 CA CA A 702 1555 1555 3.17 CISPEP 1 TYR A 272 PRO A 273 0 14.66 SITE 1 AC1 6 GLN A 84 ASP A 124 LEU A 164 ASN A 166 SITE 2 AC1 6 ILE A 168 VAL A 170 SITE 1 AC2 5 LEU A 205 ASP A 208 VAL A 210 ALA A 211 SITE 2 AC2 5 ASP A 226 SITE 1 AC3 6 ASP A 212 ASP A 214 ASP A 216 ILE A 218 SITE 2 AC3 6 ASP A 222 ASP A 225 SITE 1 AC4 4 ASP A 214 ASP A 216 ASP A 222 ASP A 224 SITE 1 AC5 5 VAL A 108 GLN A 110 ALA A 227 GLU A 229 SITE 2 AC5 5 HOH A 803 SITE 1 AC6 5 ASP A 372 LEU A 373 PRO A 375 GLY A 377 SITE 2 AC6 5 ASP A 379 CRYST1 77.323 92.498 122.222 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008182 0.00000 MASTER 391 0 6 14 17 0 11 6 0 0 0 31 END