HEADER TRANSPORT PROTEIN 12-MAR-13 4JLQ TITLE CRYSTAL STRUCTURE OF HUMAN KARYOPHERIN-BETA2 BOUND TO THE PY-NLS OF TITLE 2 SACCHAROMYCES CEREVISIAE NAB2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPORTIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 9-331 AND 375-898; COMPND 5 SYNONYM: IMPORTIN BETA-2, KARYOPHERIN BETA-2, M9 REGION INTERACTION COMPND 6 PROTEIN, MIP; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN NAB2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 205-242; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KPNB2, MIP1, TNPO1, TRN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-TEV; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 14 ORGANISM_TAXID: 559292; SOURCE 15 STRAIN: ATCC 204508 / S288C; SOURCE 16 GENE: NAB2, YGL122C; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 19 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIL; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PGEX-TEV KEYWDS HEAT REPEATS, KARYOPHERIN, NUCLEAR IMPORT, PROTEINTRANSPORT, KEYWDS 2 IMPORTIN, TRANSPORTIN, TRANSPORT PROTEIN, NLS, NAB2, STRUCTURAL KEYWDS 3 GENOMICS, NUCLEOCYTOPLASMIC TRANSPORT: A TARGET FOR CELLULAR CONTROL KEYWDS 4 (NPCXSTALS), NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM KEYWDS 5 (NYSGRC), PSI-BIOLOGY, NPCXSTALS EXPDTA X-RAY DIFFRACTION AUTHOR P.SAMPATHKUMAR,A.GIZZI,M.P.ROUT,Y.M.CHOOK,S.C.ALMO,NEW YORK AUTHOR 2 STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC),NUCLEOCYTOPLASMIC AUTHOR 3 TRANSPORT: A TARGET FOR CELLULAR CONTROL (NPCXSTALS) REVDAT 3 26-JUL-17 4JLQ 1 SOURCE REMARK REVDAT 2 04-SEP-13 4JLQ 1 JRNL REVDAT 1 03-APR-13 4JLQ 0 SPRSDE 03-APR-13 4JLQ 4H1K JRNL AUTH M.SONIAT,P.SAMPATHKUMAR,G.COLLETT,A.S.GIZZI,R.N.BANU, JRNL AUTH 2 R.C.BHOSLE,S.CHAMALA,S.CHOWDHURY,A.FISER,A.S.GLENN, JRNL AUTH 3 J.HAMMONDS,B.HILLERICH,K.KHAFIZOV,J.D.LOVE,B.MATIKAINEN, JRNL AUTH 4 R.D.SEIDEL,R.TORO,P.RAJESH KUMAR,J.B.BONANNO,Y.M.CHOOK, JRNL AUTH 5 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF HUMAN KARYOPHERIN BETA 2 BOUND TO THE JRNL TITL 2 PY-NLS OF SACCHAROMYCES CEREVISIAE NAB2. JRNL REF J.STRUCT.FUNCT.GENOM. V. 14 31 2013 JRNL REFN ISSN 1345-711X JRNL PMID 23535894 JRNL DOI 10.1007/S10969-013-9150-1 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0025 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1538 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2097 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6733 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 104.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.82000 REMARK 3 B22 (A**2) : 2.89000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.007 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.868 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6877 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6683 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9344 ; 1.538 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15401 ; 0.847 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 844 ; 6.582 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 309 ;41.327 ;25.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1224 ;16.590 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;23.163 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1075 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7706 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4JLQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000078204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30914 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QMR AND 4FDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITIONS: PROTEIN REMARK 280 (20 MM HEPES, PH 7.3, 110 MM POTASSIUM ACETATE, 2MM MAGNESIUM REMARK 280 ACETATE, 20% GLYCEROL, 2MM DTT); RESERVOIR (MCSG3 #95: 0.7 M REMARK 280 SODIUM CITRATE TRIBASIC, 100MM BIS-TRISPROPANTE PH 7.0); REMARK 280 CRYOPROTECTION (20% GLYCEROL), TEMPERATURE 298K, VAPOR DIFFUSION, REMARK 280 SITTING DROP, PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.11700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 86.19150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.11700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 86.19150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A 1:1 COMPLEX OF HSKAPBETA2 AND REMARK 300 SCNAB2-PY-NLS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 TYR A 3 REMARK 465 ASP A 321 REMARK 465 VAL A 322 REMARK 465 GLU A 323 REMARK 465 GLY A 360 REMARK 465 GLY A 361 REMARK 465 SER A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 SER A 365 REMARK 465 GLY A 366 REMARK 465 ASP A 367 REMARK 465 ARG B 205 REMARK 465 PHE B 206 REMARK 465 THR B 207 REMARK 465 GLN B 208 REMARK 465 ARG B 209 REMARK 465 GLY B 210 REMARK 465 GLY B 211 REMARK 465 GLY B 212 REMARK 465 ALA B 213 REMARK 465 VAL B 214 REMARK 465 GLY B 215 REMARK 465 LYS B 216 REMARK 465 ASN B 217 REMARK 465 ARG B 218 REMARK 465 ARG B 219 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 465 ARG B 222 REMARK 465 GLY B 223 REMARK 465 GLY B 224 REMARK 465 ASN B 225 REMARK 465 ARG B 226 REMARK 465 GLY B 227 REMARK 465 GLY B 228 REMARK 465 ARG B 229 REMARK 465 ASN B 230 REMARK 465 ASN B 231 REMARK 465 ASN B 232 REMARK 465 SER B 233 REMARK 465 LYS B 241 REMARK 465 ALA B 242 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 581 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 44 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 26 107.54 -57.57 REMARK 500 GLN A 42 -34.47 -34.88 REMARK 500 ASP A 61 124.77 -28.25 REMARK 500 HIS A 79 36.96 70.38 REMARK 500 GLU A 122 178.66 -53.86 REMARK 500 VAL A 167 -36.31 -34.75 REMARK 500 ASP A 169 72.31 57.59 REMARK 500 ARG A 170 66.78 30.37 REMARK 500 LEU A 243 -36.03 -33.29 REMARK 500 ARG A 246 64.34 -119.68 REMARK 500 ARG A 295 -35.07 -39.60 REMARK 500 ARG A 391 -128.29 44.02 REMARK 500 GLU A 393 -11.16 -45.78 REMARK 500 HIS A 408 151.91 -41.88 REMARK 500 CYS A 512 -127.22 45.63 REMARK 500 HIS A 535 -118.33 60.56 REMARK 500 HIS A 554 -36.36 -36.78 REMARK 500 GLU A 579 24.90 81.14 REMARK 500 GLN A 598 -124.28 59.90 REMARK 500 PRO A 603 -31.00 -34.31 REMARK 500 CYS A 698 73.04 -157.63 REMARK 500 ASP A 806 106.25 -47.16 REMARK 500 PRO A 825 1.85 -62.66 REMARK 500 LYS A 846 150.61 -48.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-020458 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: NYSGRC-020441 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT RESIDUES 337 TO 367 WERE REPLACED WITH REMARK 999 GGSGGSG DBREF 4JLQ A 1 323 UNP Q92973 TNPO1_HUMAN 9 331 DBREF 4JLQ A 367 890 UNP Q92973 TNPO1_HUMAN 375 898 DBREF 4JLQ B 205 242 UNP P32505 NAB2_YEAST 205 242 SEQADV 4JLQ GLY A 360 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 361 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ SER A 362 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 363 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 364 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ SER A 365 UNP Q92973 SEE REMARK 999 SEQADV 4JLQ GLY A 366 UNP Q92973 SEE REMARK 999 SEQRES 1 A 854 MET GLU TYR GLU TRP LYS PRO ASP GLU GLN GLY LEU GLN SEQRES 2 A 854 GLN ILE LEU GLN LEU LEU LYS GLU SER GLN SER PRO ASP SEQRES 3 A 854 THR THR ILE GLN ARG THR VAL GLN GLN LYS LEU GLU GLN SEQRES 4 A 854 LEU ASN GLN TYR PRO ASP PHE ASN ASN TYR LEU ILE PHE SEQRES 5 A 854 VAL LEU THR LYS LEU LYS SER GLU ASP GLU PRO THR ARG SEQRES 6 A 854 SER LEU SER GLY LEU ILE LEU LYS ASN ASN VAL LYS ALA SEQRES 7 A 854 HIS PHE GLN ASN PHE PRO ASN GLY VAL THR ASP PHE ILE SEQRES 8 A 854 LYS SER GLU CYS LEU ASN ASN ILE GLY ASP SER SER PRO SEQRES 9 A 854 LEU ILE ARG ALA THR VAL GLY ILE LEU ILE THR THR ILE SEQRES 10 A 854 ALA SER LYS GLY GLU LEU GLN ASN TRP PRO ASP LEU LEU SEQRES 11 A 854 PRO LYS LEU CYS SER LEU LEU ASP SER GLU ASP TYR ASN SEQRES 12 A 854 THR CYS GLU GLY ALA PHE GLY ALA LEU GLN LYS ILE CYS SEQRES 13 A 854 GLU ASP SER ALA GLU ILE LEU ASP SER ASP VAL LEU ASP SEQRES 14 A 854 ARG PRO LEU ASN ILE MET ILE PRO LYS PHE LEU GLN PHE SEQRES 15 A 854 PHE LYS HIS SER SER PRO LYS ILE ARG SER HIS ALA VAL SEQRES 16 A 854 ALA CYS VAL ASN GLN PHE ILE ILE SER ARG THR GLN ALA SEQRES 17 A 854 LEU MET LEU HIS ILE ASP SER PHE ILE GLU ASN LEU PHE SEQRES 18 A 854 ALA LEU ALA GLY ASP GLU GLU PRO GLU VAL ARG LYS ASN SEQRES 19 A 854 VAL CYS ARG ALA LEU VAL MET LEU LEU GLU VAL ARG MET SEQRES 20 A 854 ASP ARG LEU LEU PRO HIS MET HIS ASN ILE VAL GLU TYR SEQRES 21 A 854 MET LEU GLN ARG THR GLN ASP GLN ASP GLU ASN VAL ALA SEQRES 22 A 854 LEU GLU ALA CYS GLU PHE TRP LEU THR LEU ALA GLU GLN SEQRES 23 A 854 PRO ILE CYS LYS ASP VAL LEU VAL ARG HIS LEU PRO LYS SEQRES 24 A 854 LEU ILE PRO VAL LEU VAL ASN GLY MET LYS TYR SER ASP SEQRES 25 A 854 ILE ASP ILE ILE LEU LEU LYS GLY ASP VAL GLU GLY GLY SEQRES 26 A 854 SER GLY GLY SER GLY ASP ASP THR ILE SER ASP TRP ASN SEQRES 27 A 854 LEU ARG LYS CYS SER ALA ALA ALA LEU ASP VAL LEU ALA SEQRES 28 A 854 ASN VAL TYR ARG ASP GLU LEU LEU PRO HIS ILE LEU PRO SEQRES 29 A 854 LEU LEU LYS GLU LEU LEU PHE HIS HIS GLU TRP VAL VAL SEQRES 30 A 854 LYS GLU SER GLY ILE LEU VAL LEU GLY ALA ILE ALA GLU SEQRES 31 A 854 GLY CYS MET GLN GLY MET ILE PRO TYR LEU PRO GLU LEU SEQRES 32 A 854 ILE PRO HIS LEU ILE GLN CYS LEU SER ASP LYS LYS ALA SEQRES 33 A 854 LEU VAL ARG SER ILE THR CYS TRP THR LEU SER ARG TYR SEQRES 34 A 854 ALA HIS TRP VAL VAL SER GLN PRO PRO ASP THR TYR LEU SEQRES 35 A 854 LYS PRO LEU MET THR GLU LEU LEU LYS ARG ILE LEU ASP SEQRES 36 A 854 SER ASN LYS ARG VAL GLN GLU ALA ALA CYS SER ALA PHE SEQRES 37 A 854 ALA THR LEU GLU GLU GLU ALA CYS THR GLU LEU VAL PRO SEQRES 38 A 854 TYR LEU ALA TYR ILE LEU ASP THR LEU VAL PHE ALA PHE SEQRES 39 A 854 SER LYS TYR GLN HIS LYS ASN LEU LEU ILE LEU TYR ASP SEQRES 40 A 854 ALA ILE GLY THR LEU ALA ASP SER VAL GLY HIS HIS LEU SEQRES 41 A 854 ASN LYS PRO GLU TYR ILE GLN MET LEU MET PRO PRO LEU SEQRES 42 A 854 ILE GLN LYS TRP ASN MET LEU LYS ASP GLU ASP LYS ASP SEQRES 43 A 854 LEU PHE PRO LEU LEU GLU CYS LEU SER SER VAL ALA THR SEQRES 44 A 854 ALA LEU GLN SER GLY PHE LEU PRO TYR CYS GLU PRO VAL SEQRES 45 A 854 TYR GLN ARG CYS VAL ASN LEU VAL GLN LYS THR LEU ALA SEQRES 46 A 854 GLN ALA MET LEU ASN ASN ALA GLN PRO ASP GLN TYR GLU SEQRES 47 A 854 ALA PRO ASP LYS ASP PHE MET ILE VAL ALA LEU ASP LEU SEQRES 48 A 854 LEU SER GLY LEU ALA GLU GLY LEU GLY GLY ASN ILE GLU SEQRES 49 A 854 GLN LEU VAL ALA ARG SER ASN ILE LEU THR LEU MET TYR SEQRES 50 A 854 GLN CYS MET GLN ASP LYS MET PRO GLU VAL ARG GLN SER SEQRES 51 A 854 SER PHE ALA LEU LEU GLY ASP LEU THR LYS ALA CYS PHE SEQRES 52 A 854 GLN HIS VAL LYS PRO CYS ILE ALA ASP PHE MET PRO ILE SEQRES 53 A 854 LEU GLY THR ASN LEU ASN PRO GLU PHE ILE SER VAL CYS SEQRES 54 A 854 ASN ASN ALA THR TRP ALA ILE GLY GLU ILE SER ILE GLN SEQRES 55 A 854 MET GLY ILE GLU MET GLN PRO TYR ILE PRO MET VAL LEU SEQRES 56 A 854 HIS GLN LEU VAL GLU ILE ILE ASN ARG PRO ASN THR PRO SEQRES 57 A 854 LYS THR LEU LEU GLU ASN THR ALA ILE THR ILE GLY ARG SEQRES 58 A 854 LEU GLY TYR VAL CYS PRO GLN GLU VAL ALA PRO MET LEU SEQRES 59 A 854 GLN GLN PHE ILE ARG PRO TRP CYS THR SER LEU ARG ASN SEQRES 60 A 854 ILE ARG ASP ASN GLU GLU LYS ASP SER ALA PHE ARG GLY SEQRES 61 A 854 ILE CYS THR MET ILE SER VAL ASN PRO SER GLY VAL ILE SEQRES 62 A 854 GLN ASP PHE ILE PHE PHE CYS ASP ALA VAL ALA SER TRP SEQRES 63 A 854 ILE ASN PRO LYS ASP ASP LEU ARG ASP MET PHE CYS LYS SEQRES 64 A 854 ILE LEU HIS GLY PHE LYS ASN GLN VAL GLY ASP GLU ASN SEQRES 65 A 854 TRP ARG ARG PHE SER ASP GLN PHE PRO LEU PRO LEU LYS SEQRES 66 A 854 GLU ARG LEU ALA ALA PHE TYR GLY VAL SEQRES 1 B 38 ARG PHE THR GLN ARG GLY GLY GLY ALA VAL GLY LYS ASN SEQRES 2 B 38 ARG ARG GLY GLY ARG GLY GLY ASN ARG GLY GLY ARG ASN SEQRES 3 B 38 ASN ASN SER THR ARG PHE ASN PRO LEU ALA LYS ALA HELIX 1 1 ASP A 8 GLN A 23 1 16 HELIX 2 2 ASP A 26 GLN A 42 1 17 HELIX 3 3 ASP A 45 LYS A 56 1 12 HELIX 4 4 ASP A 61 ALA A 78 1 18 HELIX 5 5 PRO A 84 ASN A 98 1 15 HELIX 6 6 SER A 103 GLY A 121 1 19 HELIX 7 7 ASP A 128 ASP A 138 1 11 HELIX 8 8 ASP A 141 ASP A 164 1 24 HELIX 9 9 SER A 165 ASP A 169 5 5 HELIX 10 10 PRO A 171 PHE A 182 1 12 HELIX 11 11 PHE A 183 HIS A 185 5 3 HELIX 12 12 SER A 187 GLN A 200 1 14 HELIX 13 13 THR A 206 LEU A 211 1 6 HELIX 14 14 HIS A 212 ALA A 222 1 11 HELIX 15 15 GLU A 228 ARG A 246 1 19 HELIX 16 16 ARG A 246 LEU A 251 1 6 HELIX 17 17 HIS A 253 THR A 265 1 13 HELIX 18 18 ASP A 269 ALA A 284 1 16 HELIX 19 19 ILE A 288 VAL A 294 1 7 HELIX 20 20 HIS A 296 MET A 308 1 13 HELIX 21 21 SER A 311 LEU A 318 1 8 HELIX 22 22 ASN A 374 TYR A 390 1 17 HELIX 23 23 ARG A 391 GLU A 393 5 3 HELIX 24 24 LEU A 394 HIS A 408 1 15 HELIX 25 25 GLU A 410 ALA A 425 1 16 HELIX 26 26 CYS A 428 ILE A 433 1 6 HELIX 27 27 TYR A 435 LEU A 447 1 13 HELIX 28 28 LYS A 451 TYR A 465 1 15 HELIX 29 29 TYR A 465 SER A 471 1 7 HELIX 30 30 TYR A 477 ILE A 489 1 13 HELIX 31 31 ASN A 493 CYS A 512 1 20 HELIX 32 32 THR A 513 PRO A 517 5 5 HELIX 33 33 TYR A 518 TYR A 533 1 16 HELIX 34 34 HIS A 535 GLY A 553 1 19 HELIX 35 35 HIS A 554 ASN A 557 5 4 HELIX 36 36 LYS A 558 LEU A 576 1 19 HELIX 37 37 ASP A 582 GLN A 598 1 17 HELIX 38 38 SER A 599 TYR A 604 5 6 HELIX 39 39 CYS A 605 GLN A 629 1 25 HELIX 40 40 ASP A 637 LEU A 655 1 19 HELIX 41 41 GLY A 656 ASN A 658 5 3 HELIX 42 42 ILE A 659 ARG A 665 1 7 HELIX 43 43 ASN A 667 MET A 676 1 10 HELIX 44 44 MET A 680 PHE A 699 1 20 HELIX 45 45 GLN A 700 PRO A 704 5 5 HELIX 46 46 CYS A 705 ASN A 716 1 12 HELIX 47 47 PHE A 721 GLY A 740 1 20 HELIX 48 48 ILE A 741 GLN A 744 5 4 HELIX 49 49 ILE A 747 ARG A 760 1 14 HELIX 50 50 PRO A 764 CYS A 782 1 19 HELIX 51 51 CYS A 782 ALA A 787 1 6 HELIX 52 52 MET A 789 ARG A 802 1 14 HELIX 53 53 ASN A 807 ASN A 824 1 18 HELIX 54 54 SER A 826 ASP A 831 1 6 HELIX 55 55 ASP A 831 ALA A 840 1 10 HELIX 56 56 LYS A 846 ASP A 874 1 29 HELIX 57 57 PRO A 877 TYR A 888 1 12 CRYST1 132.234 172.383 68.443 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005801 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014611 0.00000 MASTER 373 0 0 57 0 0 0 6 0 0 0 69 END