HEADER IMMUNE SYSTEM 28-FEB-13 4JFH TITLE HIGH AFFINITY ALPHA24-BETA17 T CELL RECEPTOR FOR A2 HLA-MELANOMA TITLE 2 PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA24 TCR ALLELE; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA17 TCR ALLELE; COMPND 7 CHAIN: E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGMT7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ROSEATTA DE3; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGMT7 KEYWDS IMMUNOGLOBULIN, HLA, TCR, MELANOMA, IMMUNE SYSTEM, HIGH AFFINITY EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,D.K.COLE,F.MADURA,A.K.SEWELL REVDAT 4 17-JUL-13 4JFH 1 JRNL REVDAT 3 19-JUN-13 4JFH 1 JRNL REVDAT 2 05-JUN-13 4JFH 1 JRNL REVDAT 1 29-MAY-13 4JFH 0 JRNL AUTH F.MADURA,P.J.RIZKALLAH,K.M.MILES,C.J.HOLLAND,A.M.BULEK, JRNL AUTH 2 A.FULLER,A.J.SCHAUENBURG,J.J.MILES,N.LIDDY,M.SAMI,Y.LI, JRNL AUTH 3 M.HOSSAIN,B.M.BAKER,B.K.JAKOBSEN,A.K.SEWELL,D.K.COLE JRNL TITL T-CELL RECEPTOR SPECIFICITY MAINTAINED BY ALTERED JRNL TITL 2 THERMODYNAMICS. JRNL REF J.BIOL.CHEM. V. 288 18766 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23698002 JRNL DOI 10.1074/JBC.M113.464560 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1346 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1834 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -1.50000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.230 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.156 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.986 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3622 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2449 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4922 ; 1.206 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5950 ; 0.683 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 2.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;26.620 ;24.629 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;10.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.409 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4056 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2218 ; 0.956 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 887 ; 0.216 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3582 ; 1.849 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 2.776 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1340 ; 4.381 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8644 57.0056 52.7725 REMARK 3 T TENSOR REMARK 3 T11: 0.0573 T22: 0.1030 REMARK 3 T33: 0.0361 T12: 0.0140 REMARK 3 T13: 0.0047 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 1.4219 L22: 5.0924 REMARK 3 L33: 3.8217 L12: -1.0786 REMARK 3 L13: -1.6742 L23: 2.2729 REMARK 3 S TENSOR REMARK 3 S11: 0.0722 S12: 0.0253 S13: 0.0221 REMARK 3 S21: 0.2077 S22: -0.0600 S23: -0.0715 REMARK 3 S31: -0.1622 S32: 0.0195 S33: -0.0122 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 116 D 200 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6203 29.2621 34.5020 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.4098 REMARK 3 T33: 0.1305 T12: 0.0508 REMARK 3 T13: -0.0186 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 9.7701 L22: 9.1427 REMARK 3 L33: 8.0313 L12: 2.6229 REMARK 3 L13: -2.2897 L23: -0.9333 REMARK 3 S TENSOR REMARK 3 S11: 0.1396 S12: 0.1945 S13: 0.1954 REMARK 3 S21: 0.0079 S22: -0.0801 S23: 0.4732 REMARK 3 S31: 0.2033 S32: -1.1278 S33: -0.0594 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 117 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1995 45.5623 67.5915 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.1031 REMARK 3 T33: 0.0275 T12: 0.0045 REMARK 3 T13: -0.0025 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.6256 L22: 5.2558 REMARK 3 L33: 7.3277 L12: 0.4424 REMARK 3 L13: -0.3461 L23: 1.8214 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.1980 S13: 0.1288 REMARK 3 S21: 0.0320 S22: -0.2140 S23: 0.2731 REMARK 3 S31: -0.2908 S32: -0.2456 S33: 0.1757 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 118 E 244 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4003 23.1774 48.9311 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.1481 REMARK 3 T33: 0.0946 T12: -0.0919 REMARK 3 T13: 0.0007 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 7.7265 L22: 2.0271 REMARK 3 L33: 2.3373 L12: -1.3100 REMARK 3 L13: -1.9764 L23: 0.1716 REMARK 3 S TENSOR REMARK 3 S11: -0.0893 S12: 0.1962 S13: -0.3073 REMARK 3 S21: -0.0447 S22: -0.0932 S23: 0.4028 REMARK 3 S31: 0.2700 S32: -0.4397 S33: 0.1825 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4JFH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-13. REMARK 100 THE RCSB ID CODE IS RCSB077979. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26783 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.900 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : 0.19200 REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.02500 REMARK 200 R SYM FOR SHELL (I) : 2.54200 REMARK 200 FOR SHELL : 0.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CACODYLATE, 20% PEG 8000, REMARK 280 0.2 M AMMONIUM SULPHATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.05333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.02667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.02667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.05333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE2 GLN D 140 O HOH E 450 2664 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU E 107 CG GLU E 107 CD 0.100 REMARK 500 GLU E 132 CG GLU E 132 CD 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 115 55.87 -155.14 REMARK 500 SER D 124 33.04 -82.60 REMARK 500 LYS D 125 -30.56 88.48 REMARK 500 SER D 127 -82.02 -118.87 REMARK 500 ASP D 128 -11.38 127.42 REMARK 500 ASP D 155 -70.39 -62.43 REMARK 500 MET E 100 -168.97 -72.26 REMARK 500 PRO E 152 -171.61 -64.62 REMARK 500 ASP E 185 46.84 -90.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JFD RELATED DB: PDB REMARK 900 RELATED ID: 4JFE RELATED DB: PDB REMARK 900 RELATED ID: 4JFF RELATED DB: PDB REMARK 900 RELATED ID: 4JFO RELATED DB: PDB REMARK 900 RELATED ID: 4JFP RELATED DB: PDB REMARK 900 RELATED ID: 4JFQ RELATED DB: PDB DBREF 4JFH D 1 200 PDB 4JFH 4JFH 1 200 DBREF 4JFH E 1 244 PDB 4JFH 4JFH 1 244 SEQRES 1 D 200 GLN LYS GLU VAL GLU GLN ASN SER GLY PRO LEU SER VAL SEQRES 2 D 200 PRO GLU GLY ALA ILE ALA SER LEU ASN CYS THR TYR SER SEQRES 3 D 200 PHE LEU GLY SER GLN SER PHE PHE TRP TYR ARG GLN TYR SEQRES 4 D 200 SER GLY LYS SER PRO GLU LEU ILE MET PHE THR TYR ARG SEQRES 5 D 200 GLU GLY ASP LYS GLU ASP GLY ARG PHE THR ALA GLN LEU SEQRES 6 D 200 ASN LYS ALA SER GLN HIS VAL SER LEU LEU ILE ARG ASP SEQRES 7 D 200 SER GLN PRO SER ASP SER ALA THR TYR LEU CYS ALA VAL SEQRES 8 D 200 ASN ASP GLY GLY ARG LEU THR PHE GLY ASP GLY THR THR SEQRES 9 D 200 LEU THR VAL LYS PRO ASN ILE GLN ASN PRO ASP PRO ALA SEQRES 10 D 200 VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SER SEQRES 11 D 200 VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN VAL SEQRES 12 D 200 SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP LYS SEQRES 13 D 200 CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SER ASN SEQRES 14 D 200 SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA CYS SEQRES 15 D 200 ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP THR SEQRES 16 D 200 PHE PHE PRO SER PRO SEQRES 1 E 244 SER GLN THR ILE HIS GLN TRP PRO ALA THR LEU VAL GLN SEQRES 2 E 244 PRO VAL GLY SER PRO LEU SER LEU GLU CYS THR VAL GLU SEQRES 3 E 244 GLY THR SER ASN PRO ASN LEU TYR TRP TYR ARG GLN ALA SEQRES 4 E 244 ALA GLY ARG GLY PRO GLN LEU LEU PHE TYR TRP GLY PRO SEQRES 5 E 244 PHE GLY GLN ILE SER SER GLU VAL PRO GLN ASN LEU SER SEQRES 6 E 244 ALA SER ARG PRO GLN ASP ARG GLN PHE ILE LEU SER SER SEQRES 7 E 244 LYS LYS LEU LEU LEU SER ASP SER GLY PHE TYR LEU CYS SEQRES 8 E 244 ALA TRP SER GLU THR GLY LEU GLY MET GLY GLY TRP GLN SEQRES 9 E 244 PHE GLY GLU GLY SER ARG LEU THR VAL LEU GLU ASP LEU SEQRES 10 E 244 LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU PRO SEQRES 11 E 244 SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR LEU SEQRES 12 E 244 VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL GLU SEQRES 13 E 244 LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER GLY SEQRES 14 E 244 VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO ALA SEQRES 15 E 244 LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU ARG SEQRES 16 E 244 VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS PHE SEQRES 17 E 244 ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN ASP SEQRES 18 E 244 GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN ILE SEQRES 19 E 244 VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET EDO D 301 4 HET EDO D 302 4 HET EDO D 303 4 HET EDO D 304 4 HET GOL D 305 6 HET SO4 D 306 5 HET EDO E 301 4 HET SO4 E 302 5 HET SO4 E 303 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 SO4 3(O4 S 2-) FORMUL 12 HOH *161(H2 O) HELIX 1 1 GLN D 80 SER D 84 5 5 HELIX 2 2 ALA D 181 PHE D 186 1 6 HELIX 3 3 LEU E 82 SER E 86 5 5 HELIX 4 4 ASP E 116 VAL E 120 5 5 HELIX 5 5 SER E 131 GLN E 139 1 9 HELIX 6 6 ALA E 198 GLN E 202 1 5 SHEET 1 A 5 VAL D 4 GLU D 5 0 SHEET 2 A 5 ALA D 19 TYR D 25 -1 O THR D 24 N GLU D 5 SHEET 3 A 5 HIS D 71 ILE D 76 -1 O ILE D 76 N ALA D 19 SHEET 4 A 5 PHE D 61 ASN D 66 -1 N THR D 62 O LEU D 75 SHEET 5 A 5 GLY D 54 ASP D 58 -1 N ASP D 58 O PHE D 61 SHEET 1 B 5 LEU D 11 PRO D 14 0 SHEET 2 B 5 THR D 103 LYS D 108 1 O LYS D 108 N VAL D 13 SHEET 3 B 5 ALA D 85 ASP D 93 -1 N TYR D 87 O THR D 103 SHEET 4 B 5 SER D 32 GLN D 38 -1 N PHE D 34 O ALA D 90 SHEET 5 B 5 GLU D 45 THR D 50 -1 O GLU D 45 N ARG D 37 SHEET 1 C 4 LEU D 11 PRO D 14 0 SHEET 2 C 4 THR D 103 LYS D 108 1 O LYS D 108 N VAL D 13 SHEET 3 C 4 ALA D 85 ASP D 93 -1 N TYR D 87 O THR D 103 SHEET 4 C 4 ARG D 96 PHE D 99 -1 O THR D 98 N VAL D 91 SHEET 1 D 9 TYR D 152 THR D 154 0 SHEET 2 D 9 ASN D 169 SER D 175 -1 O TRP D 174 N TYR D 152 SHEET 3 D 9 SER D 130 PHE D 137 -1 N PHE D 134 O ALA D 171 SHEET 4 D 9 ALA D 117 ASP D 123 -1 N TYR D 119 O LEU D 133 SHEET 5 D 9 GLU E 124 GLU E 129 -1 O GLU E 129 N ARG D 122 SHEET 6 D 9 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 7 D 9 TYR E 188 SER E 197 -1 O LEU E 194 N LEU E 143 SHEET 8 D 9 VAL E 170 THR E 172 -1 N CYS E 171 O ARG E 193 SHEET 9 D 9 VAL D 158 LEU D 159 -1 N VAL D 158 O THR E 172 SHEET 1 E 8 TYR D 152 THR D 154 0 SHEET 2 E 8 ASN D 169 SER D 175 -1 O TRP D 174 N TYR D 152 SHEET 3 E 8 SER D 130 PHE D 137 -1 N PHE D 134 O ALA D 171 SHEET 4 E 8 ALA D 117 ASP D 123 -1 N TYR D 119 O LEU D 133 SHEET 5 E 8 GLU E 124 GLU E 129 -1 O GLU E 129 N ARG D 122 SHEET 6 E 8 LYS E 140 PHE E 150 -1 O VAL E 144 N PHE E 128 SHEET 7 E 8 TYR E 188 SER E 197 -1 O LEU E 194 N LEU E 143 SHEET 8 E 8 LEU E 177 LYS E 178 -1 N LEU E 177 O ALA E 189 SHEET 1 F 4 THR E 3 TRP E 7 0 SHEET 2 F 4 LEU E 19 GLU E 26 -1 O GLU E 22 N TRP E 7 SHEET 3 F 4 GLN E 73 SER E 78 -1 O LEU E 76 N LEU E 21 SHEET 4 F 4 SER E 65 GLN E 70 -1 N SER E 65 O SER E 77 SHEET 1 G 6 THR E 10 PRO E 14 0 SHEET 2 G 6 SER E 109 LEU E 114 1 O ARG E 110 N LEU E 11 SHEET 3 G 6 GLY E 87 SER E 94 -1 N TYR E 89 O SER E 109 SHEET 4 G 6 ASN E 32 GLN E 38 -1 N TYR E 36 O LEU E 90 SHEET 5 G 6 GLN E 45 GLY E 51 -1 O GLN E 45 N ARG E 37 SHEET 6 G 6 GLY E 54 SER E 57 -1 O ILE E 56 N TYR E 49 SHEET 1 H 4 THR E 10 PRO E 14 0 SHEET 2 H 4 SER E 109 LEU E 114 1 O ARG E 110 N LEU E 11 SHEET 3 H 4 GLY E 87 SER E 94 -1 N TYR E 89 O SER E 109 SHEET 4 H 4 GLY E 102 PHE E 105 -1 O TRP E 103 N TRP E 93 SHEET 1 I 4 LYS E 164 VAL E 166 0 SHEET 2 I 4 VAL E 155 VAL E 161 -1 N VAL E 161 O LYS E 164 SHEET 3 I 4 HIS E 207 PHE E 214 -1 O GLN E 211 N SER E 158 SHEET 4 I 4 GLN E 233 TRP E 240 -1 O ALA E 239 N PHE E 208 SSBOND 1 CYS D 23 CYS D 89 1555 1555 2.12 SSBOND 2 CYS D 132 CYS D 182 1555 1555 2.08 SSBOND 3 CYS D 157 CYS E 171 1555 1555 2.08 SSBOND 4 CYS E 23 CYS E 91 1555 1555 2.03 SSBOND 5 CYS E 145 CYS E 210 1555 1555 2.01 CISPEP 1 TRP E 7 PRO E 8 0 -1.92 CISPEP 2 TYR E 151 PRO E 152 0 0.57 SITE 1 AC1 8 GLU D 3 TYR D 25 SER D 26 PHE D 27 SITE 2 AC1 8 SER D 30 VAL D 91 ASP D 93 HOH D 430 SITE 1 AC2 5 GLY D 16 ILE D 18 ARG D 77 ASP D 78 SITE 2 AC2 5 HOH D 433 SITE 1 AC3 5 PRO D 14 SER E 67 ILE E 75 SER E 77 SITE 2 AC3 5 HOH E 453 SITE 1 AC4 6 LYS D 2 GLU D 3 GLU D 5 THR D 24 SITE 2 AC4 6 TYR D 25 SER D 26 SITE 1 AC5 7 ARG D 96 LEU D 97 THR D 98 PHE D 99 SITE 2 AC5 7 PRO E 44 GLN E 45 LEU E 46 SITE 1 AC6 2 ARG D 60 HOH D 408 SITE 1 AC7 6 TRP E 160 ASN E 162 GLY E 163 HIS E 207 SITE 2 AC7 6 ARG E 209 HOH E 480 SITE 1 AC8 8 THR E 10 LEU E 11 VAL E 12 ARG E 110 SITE 2 AC8 8 THR E 112 PRO E 152 ASP E 153 HIS E 154 SITE 1 AC9 4 ARG D 162 VAL E 166 HIS E 167 SER E 168 CRYST1 97.140 97.140 123.080 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010294 0.005943 0.000000 0.00000 SCALE2 0.000000 0.011887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008125 0.00000 MASTER 429 0 9 6 49 0 16 6 0 0 0 35 END