HEADER DNA BINDING PROTEIN/DNA 22-FEB-13 4JCY TITLE CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN TITLE 2 C.CSP231I OR OPERATOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CSP231I C PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*AP*AP*AP*CP*TP*AP*AP*GP*AP*AP*AP*AP*TP*CP*TP*TP*AP*GP*CP*AP*A)- COMPND 8 3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'- COMPND 13 D(*TP*TP*GP*CP*TP*AP*AP*GP*AP*TP*TP*TP*TP*CP*TP*TP*AP*GP*TP*TP*T)- COMPND 14 3'); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CITROBACTER SP. RFL231; SOURCE 3 ORGANISM_TAXID: 315237; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-11A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS HELIX-TURN-HELIX, C CONTROLLER PROTEIN, RESTRICTION-MODIFICATION KEYWDS 2 SYSTEMS, TRANSCRIPTIONAL REGULATION, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.B.SHEVTSOV,S.D.STREETER,S.J.THRESH,J.E.MCGEEHAN,G.G.KNEALE REVDAT 3 15-APR-15 4JCY 1 JRNL REVDAT 2 11-FEB-15 4JCY 1 JRNL REVDAT 1 26-FEB-14 4JCY 0 JRNL AUTH M.B.SHEVTSOV,S.D.STREETER,S.J.THRESH,A.SWIDERSKA, JRNL AUTH 2 J.E.MCGEEHAN,G.G.KNEALE JRNL TITL STRUCTURAL ANALYSIS OF DNA BINDING BY C.CSP231I, A MEMBER OF JRNL TITL 2 A NOVEL CLASS OF R-M CONTROLLER PROTEINS REGULATING GENE JRNL TITL 3 EXPRESSION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 398 2015 JRNL REFN ISSN 0907-4449 JRNL PMID 25664751 JRNL DOI 10.1107/S139900471402690X REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30476 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1570 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.1920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1494 REMARK 3 NUCLEIC ACID ATOMS : 855 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.019 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.104 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2474 ; 0.004 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3511 ; 0.952 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 182 ; 4.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;37.751 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 296 ;11.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;12.664 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 348 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1573 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.971 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 57.6103 40.8242 -9.7151 REMARK 3 T TENSOR REMARK 3 T11: 0.0674 T22: 0.0766 REMARK 3 T33: 0.0691 T12: -0.0320 REMARK 3 T13: 0.0186 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.4308 L22: 2.4567 REMARK 3 L33: 0.7572 L12: -0.8158 REMARK 3 L13: 0.3185 L23: -0.3512 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.2135 S13: 0.1554 REMARK 3 S21: -0.0730 S22: -0.0890 S23: -0.3716 REMARK 3 S31: -0.1102 S32: 0.1340 S33: 0.0183 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 92 REMARK 3 ORIGIN FOR THE GROUP (A): 64.1036 29.5138 4.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.0514 T22: 0.0527 REMARK 3 T33: 0.0685 T12: -0.0160 REMARK 3 T13: -0.0201 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.4186 L22: 2.9054 REMARK 3 L33: 1.5691 L12: -0.0742 REMARK 3 L13: 0.2222 L23: -0.6462 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: -0.0384 S13: 0.1357 REMARK 3 S21: 0.2190 S22: -0.0688 S23: -0.2845 REMARK 3 S31: -0.1970 S32: 0.1733 S33: 0.0399 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 21 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3730 24.4942 -2.7016 REMARK 3 T TENSOR REMARK 3 T11: 0.0874 T22: 0.1178 REMARK 3 T33: 0.1153 T12: -0.0477 REMARK 3 T13: 0.0014 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 0.9980 L22: 3.1956 REMARK 3 L33: 0.8711 L12: -0.6077 REMARK 3 L13: 0.3777 L23: -1.3631 REMARK 3 S TENSOR REMARK 3 S11: 0.0942 S12: -0.0056 S13: -0.2460 REMARK 3 S21: -0.0100 S22: 0.0412 S23: 0.4463 REMARK 3 S31: 0.0847 S32: -0.0423 S33: -0.1354 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 21 REMARK 3 ORIGIN FOR THE GROUP (A): 42.3055 24.4521 -2.8378 REMARK 3 T TENSOR REMARK 3 T11: 0.0933 T22: 0.1211 REMARK 3 T33: 0.1192 T12: -0.0275 REMARK 3 T13: 0.0116 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.8472 L22: 2.0975 REMARK 3 L33: 0.8115 L12: -1.2391 REMARK 3 L13: 1.0109 L23: -1.1416 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.0339 S13: -0.2710 REMARK 3 S21: 0.0094 S22: 0.1422 S23: 0.3914 REMARK 3 S31: -0.0014 S32: -0.1278 S33: -0.1630 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 310 REMARK 3 RESIDUE RANGE : B 201 B 318 REMARK 3 RESIDUE RANGE : C 101 C 188 REMARK 3 RESIDUE RANGE : D 101 D 186 REMARK 3 ORIGIN FOR THE GROUP (A): 52.0504 28.6680 -2.4486 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1717 REMARK 3 T33: 0.1689 T12: -0.0272 REMARK 3 T13: 0.0139 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.4464 L22: 1.1160 REMARK 3 L33: 0.5108 L12: -0.5176 REMARK 3 L13: 0.3013 L23: -0.5136 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.0060 S13: -0.0154 REMARK 3 S21: -0.0129 S22: -0.0015 S23: 0.0357 REMARK 3 S31: 0.0228 S32: -0.0355 S33: -0.0013 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 102 REMARK 3 RESIDUE RANGE : B 101 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 56.7520 32.7727 -2.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.1319 T22: 0.0639 REMARK 3 T33: 0.1523 T12: 0.0631 REMARK 3 T13: 0.0091 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 3.8207 L22: 5.3454 REMARK 3 L33: 4.2778 L12: -0.8265 REMARK 3 L13: -2.2243 L23: 4.4007 REMARK 3 S TENSOR REMARK 3 S11: -0.3629 S12: -0.2235 S13: -0.2734 REMARK 3 S21: -0.0408 S22: -0.2149 S23: 0.5986 REMARK 3 S31: 0.1099 S32: -0.0582 S33: 0.5778 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAR-13. REMARK 100 THE RCSB ID CODE IS RCSB077889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 53.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3LFP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS DIALYSED AGAINST THE REMARK 280 BUFFER CONTAINING 0.1 M NACL, 50 MM TRIS-HCL PH 8.0, 1 MM EDTA. REMARK 280 CRYSTALLISATION CONDITIONS: 0.2 M SODIUM IODIDE, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.0, 15 % (W/V) PEG3350, 10 MM SPERMIDINE, PROTEIN REMARK 280 DIMER/DNA MOLAR RATIO 1:1, PROTEIN CONCENTRATION 4.6 MG/ML , REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.69333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 105.38667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.04000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 131.73333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.34667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS A PROTEIN REMARK 300 DIMER BOUND TO DNA DUPLEX. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 93 REMARK 465 ARG A 94 REMARK 465 LYS A 95 REMARK 465 LYS A 96 REMARK 465 ALA A 97 REMARK 465 LYS A 98 REMARK 465 ILE B 93 REMARK 465 ARG B 94 REMARK 465 LYS B 95 REMARK 465 LYS B 96 REMARK 465 ALA B 97 REMARK 465 LYS B 98 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 307 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LFP RELATED DB: PDB REMARK 900 FREE NON-COMPLEXED C.CSP231I PROTEIN DIMER REMARK 900 RELATED ID: 3LIS RELATED DB: PDB REMARK 900 FREE NON-COMPLEXED C.CSP231I PROTEIN DIMER (MONOCLINIC FORM) REMARK 900 RELATED ID: 4JCX RELATED DB: PDB REMARK 900 C.CSP231I PROTEIN DIMER COMPLEXED WITH 21 BP OL OPERATOR REMARK 900 SEQUENCE DBREF 4JCY A 1 98 UNP Q32WH4 Q32WH4_9ENTR 1 98 DBREF 4JCY B 1 98 UNP Q32WH4 Q32WH4_9ENTR 1 98 DBREF 4JCY C 1 21 PDB 4JCY 4JCY 1 21 DBREF 4JCY D 1 21 PDB 4JCY 4JCY 1 21 SEQRES 1 A 98 MET LEU ILE ARG ARG LEU LYS ASP ALA ARG LEU ARG ALA SEQRES 2 A 98 GLY ILE SER GLN GLU LYS LEU GLY VAL LEU ALA GLY ILE SEQRES 3 A 98 ASP GLU ALA SER ALA SER ALA ARG MET ASN GLN TYR GLU SEQRES 4 A 98 LYS GLY LYS HIS ALA PRO ASP PHE GLU MET ALA ASN ARG SEQRES 5 A 98 LEU ALA LYS VAL LEU LYS ILE PRO VAL SER TYR LEU TYR SEQRES 6 A 98 THR PRO GLU ASP ASP LEU ALA GLN ILE ILE LEU THR TRP SEQRES 7 A 98 ASN GLU LEU ASN GLU GLN GLU ARG LYS ARG ILE ASN PHE SEQRES 8 A 98 TYR ILE ARG LYS LYS ALA LYS SEQRES 1 B 98 MET LEU ILE ARG ARG LEU LYS ASP ALA ARG LEU ARG ALA SEQRES 2 B 98 GLY ILE SER GLN GLU LYS LEU GLY VAL LEU ALA GLY ILE SEQRES 3 B 98 ASP GLU ALA SER ALA SER ALA ARG MET ASN GLN TYR GLU SEQRES 4 B 98 LYS GLY LYS HIS ALA PRO ASP PHE GLU MET ALA ASN ARG SEQRES 5 B 98 LEU ALA LYS VAL LEU LYS ILE PRO VAL SER TYR LEU TYR SEQRES 6 B 98 THR PRO GLU ASP ASP LEU ALA GLN ILE ILE LEU THR TRP SEQRES 7 B 98 ASN GLU LEU ASN GLU GLN GLU ARG LYS ARG ILE ASN PHE SEQRES 8 B 98 TYR ILE ARG LYS LYS ALA LYS SEQRES 1 C 21 DA DA DA DC DT DA DA DG DA DA DA DA DT SEQRES 2 C 21 DC DT DT DA DG DC DA DA SEQRES 1 D 21 DT DT DG DC DT DA DA DG DA DT DT DT DT SEQRES 2 D 21 DC DT DT DA DG DT DT DT HET IOD A 101 1 HET IOD A 102 1 HET IOD B 101 1 HET IOD B 102 1 HETNAM IOD IODIDE ION FORMUL 5 IOD 4(I 1-) FORMUL 9 HOH *402(H2 O) HELIX 1 1 LEU A 2 GLY A 14 1 13 HELIX 2 2 SER A 16 ALA A 24 1 9 HELIX 3 3 SER A 30 LYS A 40 1 11 HELIX 4 4 ASP A 46 LYS A 58 1 13 HELIX 5 5 PRO A 60 THR A 66 5 7 HELIX 6 6 GLU A 68 GLU A 80 1 13 HELIX 7 7 ASN A 82 TYR A 92 1 11 HELIX 8 8 LEU B 2 GLY B 14 1 13 HELIX 9 9 SER B 16 ALA B 24 1 9 HELIX 10 10 SER B 30 LYS B 40 1 11 HELIX 11 11 ASP B 46 LYS B 58 1 13 HELIX 12 12 PRO B 60 THR B 66 5 7 HELIX 13 13 GLU B 68 LEU B 81 1 14 HELIX 14 14 ASN B 82 TYR B 92 1 11 SITE 1 AC1 1 HOH A 291 CRYST1 62.340 62.340 158.080 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016041 0.009261 0.000000 0.00000 SCALE2 0.000000 0.018523 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006326 0.00000 MASTER 418 0 4 14 0 0 1 6 0 0 0 20 END