HEADER TRANSFERASE 20-FEB-13 4JBR TITLE TRNA-GUANINE TRANSGLYCOSYLASE Y330C MUTANT AS COVALENTLY LINKED DIMER TITLE 2 IN SPACE GROUP P6(5)22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PASK-IBA13PLUS KEYWDS COVALENT DIMER, TIM-BARREL, TRANSFERASE, GUANINE, PREQ1, TRNA EXPDTA X-RAY DIFFRACTION AUTHOR S.JAKOBI,G.KLEBE REVDAT 2 16-JUN-21 4JBR 1 JRNL REMARK SEQADV LINK REVDAT 1 19-MAR-14 4JBR 0 JRNL AUTH D.NGUYEN,X.XIE,S.JAKOBI,F.TERWESTEN,A.METZ,T.X.P.NGUYEN, JRNL AUTH 2 V.A.PALCHYKOV,A.HEINE,K.REUTER,G.KLEBE JRNL TITL TARGETING A CRYPTIC POCKET IN A PROTEIN-PROTEIN CONTACT BY JRNL TITL 2 DISULFIDE-INDUCED RUPTURE OF A HOMODIMERIC INTERFACE JRNL REF ACS CHEM.BIOL. 2021 JRNL REFN ESSN 1554-8937 JRNL PMID 34081441 JRNL DOI 10.1021/ACSCHEMBIO.1C00296 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1118 - 4.9860 0.99 2527 135 0.2328 0.2769 REMARK 3 2 4.9860 - 3.9610 1.00 2376 136 0.1758 0.1900 REMARK 3 3 3.9610 - 3.4614 1.00 2365 120 0.1771 0.2179 REMARK 3 4 3.4614 - 3.1454 1.00 2362 115 0.2065 0.2677 REMARK 3 5 3.1454 - 2.9202 1.00 2313 129 0.2433 0.3459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 45.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.94040 REMARK 3 B22 (A**2) : -1.94040 REMARK 3 B33 (A**2) : 3.88090 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2850 REMARK 3 ANGLE : 0.665 3856 REMARK 3 CHIRALITY : 0.041 418 REMARK 3 PLANARITY : 0.003 513 REMARK 3 DIHEDRAL : 12.268 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 11:70) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5978 40.2921 -11.7112 REMARK 3 T TENSOR REMARK 3 T11: 0.3232 T22: 0.2649 REMARK 3 T33: 0.2751 T12: 0.0534 REMARK 3 T13: -0.0075 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.0393 L22: 0.0731 REMARK 3 L33: 0.0485 L12: 0.0564 REMARK 3 L13: 0.0152 L23: 0.0274 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: 0.0267 S13: -0.0470 REMARK 3 S21: -0.0041 S22: -0.1069 S23: -0.1071 REMARK 3 S31: -0.0588 S32: -0.0822 S33: -0.0005 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 71:98) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2276 40.6282 -6.6375 REMARK 3 T TENSOR REMARK 3 T11: 0.3296 T22: 0.3118 REMARK 3 T33: 0.3690 T12: -0.0571 REMARK 3 T13: -0.0460 T23: -0.0534 REMARK 3 L TENSOR REMARK 3 L11: 0.0203 L22: 0.0194 REMARK 3 L33: 0.0293 L12: 0.0049 REMARK 3 L13: -0.0204 L23: 0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0731 S12: 0.1267 S13: 0.0642 REMARK 3 S21: 0.0751 S22: 0.0135 S23: -0.1029 REMARK 3 S31: 0.0786 S32: -0.0011 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 99:147) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5129 47.3107 6.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.3361 T22: 0.1976 REMARK 3 T33: 0.2551 T12: -0.1225 REMARK 3 T13: -0.1266 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 0.1235 L22: 0.0035 REMARK 3 L33: 0.2619 L12: 0.0030 REMARK 3 L13: -0.1545 L23: -0.0141 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.0666 S13: -0.0422 REMARK 3 S21: 0.1126 S22: -0.0279 S23: -0.0188 REMARK 3 S31: -0.0132 S32: 0.0010 S33: 0.1716 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 148:236) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5319 52.9110 4.8845 REMARK 3 T TENSOR REMARK 3 T11: 0.3496 T22: 0.1209 REMARK 3 T33: 0.1263 T12: -0.0542 REMARK 3 T13: 0.0171 T23: -0.1658 REMARK 3 L TENSOR REMARK 3 L11: 0.0863 L22: 0.2067 REMARK 3 L33: 0.0710 L12: -0.0011 REMARK 3 L13: -0.0025 L23: -0.0846 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: -0.0631 S13: 0.0760 REMARK 3 S21: -0.1144 S22: -0.1458 S23: -0.0184 REMARK 3 S31: -0.0002 S32: -0.0901 S33: -0.4985 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 237:282) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2166 42.5370 1.0199 REMARK 3 T TENSOR REMARK 3 T11: 0.3246 T22: 0.3689 REMARK 3 T33: 0.3347 T12: 0.0374 REMARK 3 T13: 0.0026 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 0.0295 L22: 0.0321 REMARK 3 L33: 0.0241 L12: 0.0334 REMARK 3 L13: 0.0186 L23: 0.0218 REMARK 3 S TENSOR REMARK 3 S11: 0.0421 S12: -0.0885 S13: -0.0101 REMARK 3 S21: -0.0774 S22: -0.1328 S23: -0.1141 REMARK 3 S31: -0.0472 S32: -0.1067 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 283:318) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2558 17.1715 -2.5439 REMARK 3 T TENSOR REMARK 3 T11: 0.3297 T22: 0.3658 REMARK 3 T33: 0.4817 T12: -0.0862 REMARK 3 T13: -0.0631 T23: 0.1254 REMARK 3 L TENSOR REMARK 3 L11: 0.0272 L22: 0.0099 REMARK 3 L33: 0.0141 L12: -0.0156 REMARK 3 L13: -0.0211 L23: 0.0127 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.1063 S13: -0.1283 REMARK 3 S21: 0.0360 S22: -0.0611 S23: 0.1641 REMARK 3 S31: -0.1134 S32: -0.0526 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 319:385) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2365 23.7349 -7.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.2893 REMARK 3 T33: 0.3159 T12: -0.0245 REMARK 3 T13: -0.0220 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.0346 L22: 0.0417 REMARK 3 L33: 0.0158 L12: -0.0096 REMARK 3 L13: -0.0297 L23: 0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.1805 S12: -0.0630 S13: -0.0263 REMARK 3 S21: 0.0496 S22: -0.1801 S23: 0.0144 REMARK 3 S31: 0.0572 S32: 0.0243 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT IN 7 GROUPS REMARK 4 REMARK 4 4JBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000077846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12637 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44100 REMARK 200 FOR SHELL : 6.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGAC 0.2M, PEG3350 20%; 2% DMSO AND REMARK 280 10% GLYCEROL IN CRYOPROTECTION BUFFER, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.51333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.75667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.13500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.37833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.89167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.51333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.75667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.37833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.13500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.89167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIZATION AND FORMATION OF DISULFIDBRIDGE UPON REMARK 300 CRYSTALLIZATION, MONOMERIC STATE IN SOLUTION PROVEN BY NATIVE REMARK 300 NANOESI-MS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.37833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 SER A 113 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 MET A 109 CG SD CE REMARK 470 SER A 112 OG REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 158 SG REMARK 470 THR A 159 OG1 CG2 REMARK 470 SER A 166 OG REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 SER A 170 OG REMARK 470 SER A 171 OG REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 SER A 205 OG REMARK 470 VAL A 206 CG1 CG2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 VAL A 228 CG1 CG2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 243 CG1 CG2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 385 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 105.17 -160.25 REMARK 500 THR A 47 -93.02 -116.84 REMARK 500 ALA A 48 6.33 -163.23 REMARK 500 MET A 109 30.82 -89.91 REMARK 500 SER A 110 3.42 -162.41 REMARK 500 ASP A 129 -19.47 -141.73 REMARK 500 SER A 205 -133.17 50.72 REMARK 500 LYS A 325 -52.91 -150.43 REMARK 500 ARG A 384 -141.42 54.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 103.2 REMARK 620 3 CYS A 323 SG 117.6 112.8 REMARK 620 4 HIS A 349 ND1 103.6 116.0 103.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HTB RELATED DB: PDB REMARK 900 RELATED ID: 3UNT RELATED DB: PDB REMARK 900 RELATED ID: 4DXX RELATED DB: PDB REMARK 900 RELATED ID: 4DY1 RELATED DB: PDB REMARK 900 RELATED ID: 3UVI RELATED DB: PDB REMARK 900 RELATED ID: 1PUD RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AMINO ACID AT POSITION 312 IS LYS. SEE REUTER ET AL. [J. REMARK 999 BACTERIOL. 177:5284-5288(1995)] DBREF 4JBR A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 4JBR GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 4JBR SER A 0 UNP P28720 EXPRESSION TAG SEQADV 4JBR LYS A 312 UNP P28720 THR 312 SEE REMARK 999 SEQADV 4JBR CYS A 330 UNP P28720 TYR 330 ENGINEERED MUTATION SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA CYS ILE HIS HIS LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET DMS A 402 4 HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 ZN ZN 2+ FORMUL 3 DMS C2 H6 O S FORMUL 4 HOH *121(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 ASN A 70 ARG A 77 1 8 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 MET A 93 1 6 HELIX 5 5 GLY A 104 SER A 112 1 9 HELIX 6 6 SER A 136 LEU A 147 1 12 HELIX 7 7 THR A 164 SER A 188 1 25 HELIX 8 8 ARG A 189 GLU A 194 1 6 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 GLU A 273 1 10 HELIX 13 13 VAL A 282 GLY A 291 1 10 HELIX 14 14 ASN A 304 GLU A 309 5 6 HELIX 15 15 SER A 327 ALA A 337 1 11 HELIX 16 16 GLU A 339 GLU A 367 1 29 HELIX 17 17 ARG A 369 ALA A 383 1 15 SHEET 1 A 3 PHE A 14 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 A 3 GLY A 35 THR A 39 -1 O THR A 39 N GLY A 28 SHEET 1 B 8 ALA A 41 PHE A 42 0 SHEET 2 B 8 MET A 278 PHE A 279 1 O PHE A 279 N ALA A 41 SHEET 3 B 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 B 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 8 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 C 3 LYS A 116 GLN A 117 0 SHEET 2 C 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 D 2 GLN A 292 THR A 295 0 SHEET 2 D 2 GLY A 298 ASN A 301 -1 O ILE A 300 N ALA A 293 SSBOND 1 CYS A 330 CYS A 330 1555 12554 2.04 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.32 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.05 CISPEP 1 THR A 39 PRO A 40 0 -0.17 CISPEP 2 ARG A 77 PRO A 78 0 -0.09 CISPEP 3 TYR A 161 PRO A 162 0 -1.69 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 3 THR A 47 ALA A 49 MET A 93 CRYST1 127.552 127.552 116.270 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007840 0.004526 0.000000 0.00000 SCALE2 0.000000 0.009053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008601 0.00000 MASTER 472 0 2 17 16 0 2 6 0 0 0 30 END