HEADER DNA BINDING PROTEIN/DNA 19-FEB-13 4JBK TITLE MOLECULAR BASIS FOR ABROGATION OF ACTIVATION OF PRO-INFLAMMATORY TITLE 2 CYTOKINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-ACTIVABLE PROTEIN 202; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: HINA DOMAIN, UNP RESIDUES 46-242; COMPND 5 SYNONYM: IFI-202, INTERFERON-INDUCIBLE PROTEIN P202, LUPUS COMPND 6 SUSCEPTIBILITY PROTEIN P202; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*GP*GP*AP*AP*TP*TP*AP*TP*AP*AP*TP*TP*CP*C)-3'); COMPND 10 CHAIN: E, F, G, H; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IFI202A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS OB FOLD, DNA, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.RU,X.NI,C.CROWLEY,L.ZHAO,W.DING,L.-W.HUNG,N.SHAW,G.CHENG,Z.-J.LIU REVDAT 1 26-JUN-13 4JBK 0 JRNL AUTH H.RU,X.NI,L.ZHAO,C.CROWLEY,W.DING,L.-W.HUNG,N.SHAW,G.CHENG, JRNL AUTH 2 Z.-J.LIU JRNL TITL STRUCTURAL BASIS FOR TERMINATION OF AIM2-MEDIATED SIGNALING JRNL TITL 2 BY P202 JRNL REF CELL RES. V. 23 855 2013 JRNL REFN ISSN 1001-0602 JRNL PMID 23567559 JRNL DOI 10.1038/CR.2013.52 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 21825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1794 - 7.1343 0.99 1441 152 0.2085 0.1924 REMARK 3 2 7.1343 - 5.6658 1.00 1455 137 0.2140 0.2362 REMARK 3 3 5.6658 - 4.9505 1.00 1430 154 0.1951 0.2125 REMARK 3 4 4.9505 - 4.4982 1.00 1416 143 0.1772 0.1962 REMARK 3 5 4.4982 - 4.1760 1.00 1440 142 0.1782 0.2476 REMARK 3 6 4.1760 - 3.9299 1.00 1429 139 0.2137 0.2418 REMARK 3 7 3.9299 - 3.7332 1.00 1442 146 0.2223 0.2950 REMARK 3 8 3.7332 - 3.5708 0.99 1410 146 0.2302 0.2836 REMARK 3 9 3.5708 - 3.4333 1.00 1414 127 0.2401 0.2762 REMARK 3 10 3.4333 - 3.3149 0.99 1408 149 0.2522 0.3297 REMARK 3 11 3.3149 - 3.2113 0.98 1374 150 0.2723 0.3130 REMARK 3 12 3.2113 - 3.1195 0.99 1412 134 0.2753 0.3732 REMARK 3 13 3.1195 - 3.0374 1.00 1445 134 0.2991 0.3550 REMARK 3 14 3.0374 - 2.9633 0.94 1319 137 0.3445 0.3876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7482 REMARK 3 ANGLE : 1.315 10279 REMARK 3 CHIRALITY : 0.088 1154 REMARK 3 PLANARITY : 0.005 1096 REMARK 3 DIHEDRAL : 18.526 2909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.4911 11.4431 70.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.5107 T22: 0.6014 REMARK 3 T33: 0.4829 T12: 0.0264 REMARK 3 T13: 0.0080 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3415 L22: 0.2265 REMARK 3 L33: 0.1946 L12: 0.0780 REMARK 3 L13: -0.2681 L23: -0.0123 REMARK 3 S TENSOR REMARK 3 S11: -0.0714 S12: -0.0953 S13: 0.0444 REMARK 3 S21: -0.0263 S22: 0.0446 S23: -0.0508 REMARK 3 S31: 0.0910 S32: 0.1693 S33: 0.0430 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4JBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077839. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.963 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4JBM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 0.1M TRIS-HCL, REMARK 280 20%(W/V) POLYETHYLENE GLYCOL 3000, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 53.15200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 53.15200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 54.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.07076 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 183.77908 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 159.49138 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.88954 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 TYR A 167 REMARK 465 GLU A 168 REMARK 465 LYS A 169 REMARK 465 GLY A 170 REMARK 465 ASP A 171 REMARK 465 MET B 2 REMARK 465 GLU B 161 REMARK 465 GLN B 162 REMARK 465 HIS B 163 REMARK 465 ASN B 164 REMARK 465 ILE B 165 REMARK 465 ASN B 166 REMARK 465 TYR B 167 REMARK 465 MET C 2 REMARK 465 GLN C 162 REMARK 465 HIS C 163 REMARK 465 ASN C 164 REMARK 465 ILE C 165 REMARK 465 ASN C 166 REMARK 465 TYR C 167 REMARK 465 GLU C 168 REMARK 465 LYS C 169 REMARK 465 GLY C 170 REMARK 465 MET D 2 REMARK 465 HIS D 163 REMARK 465 TYR D 167 REMARK 465 GLU D 168 REMARK 465 LYS D 169 REMARK 465 GLY D 170 REMARK 465 ASP D 171 REMARK 465 LYS D 172 REMARK 465 LEU D 173 REMARK 465 LYS D 182 REMARK 465 GLY D 183 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS D 33 OD1 ASN D 193 2.08 REMARK 500 OD1 ASP A 149 N ASP A 152 2.09 REMARK 500 OG SER C 73 OG1 THR C 89 2.10 REMARK 500 O GLU D 62 OG1 THR D 65 2.14 REMARK 500 NZ LYS B 137 O3' DT G 8 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 8 O3' DT G 8 C3' -0.059 REMARK 500 DA G 9 O3' DA G 9 C3' 0.103 REMARK 500 DA G 10 C5' DA G 10 C4' 0.064 REMARK 500 DA G 10 O3' DA G 10 C3' -0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 95 C - N - CD ANGL. DEV. = 13.2 DEGREES REMARK 500 DT E 5 OP1 - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DT E 5 O3' - P - OP2 ANGL. DEV. = -17.5 DEGREES REMARK 500 DT E 5 O3' - P - OP1 ANGL. DEV. = -23.6 DEGREES REMARK 500 DT E 8 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT F 8 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC F 13 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA G 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT G 8 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DT G 8 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DA G 9 O5' - C5' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA G 9 O4' - C4' - C3' ANGL. DEV. = 4.5 DEGREES REMARK 500 DA G 9 C4' - C3' - C2' ANGL. DEV. = -8.9 DEGREES REMARK 500 DA G 9 C3' - C2' - C1' ANGL. DEV. = 7.6 DEGREES REMARK 500 DA G 9 O4' - C1' - C2' ANGL. DEV. = -8.0 DEGREES REMARK 500 DA G 10 O5' - P - OP2 ANGL. DEV. = 13.2 DEGREES REMARK 500 DA G 10 O5' - C5' - C4' ANGL. DEV. = 30.9 DEGREES REMARK 500 DA G 10 P - O5' - C5' ANGL. DEV. = 20.2 DEGREES REMARK 500 DA G 10 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DA G 10 C5' - C4' - C3' ANGL. DEV. = -11.2 DEGREES REMARK 500 DA G 10 C5' - C4' - O4' ANGL. DEV. = 7.7 DEGREES REMARK 500 DA G 10 C4' - C3' - C2' ANGL. DEV. = 5.7 DEGREES REMARK 500 DA G 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA G 10 C4 - C5 - C6 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA G 10 C5 - C6 - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA G 10 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DA G 10 C8 - N9 - C4 ANGL. DEV. = -3.0 DEGREES REMARK 500 DT G 12 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC G 13 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG H 1 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT H 8 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC H 13 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 149 -156.79 -129.28 REMARK 500 LYS B 182 -168.97 -116.62 REMARK 500 ASN C 7 -0.55 61.92 REMARK 500 ASP C 159 51.32 -112.44 REMARK 500 LYS C 182 -86.47 -109.67 REMARK 500 MET D 98 65.30 -69.10 REMARK 500 PHE D 99 -174.36 -66.58 REMARK 500 ASP D 159 51.05 -111.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JBJ RELATED DB: PDB REMARK 900 UNLIGANDED P202A REMARK 900 RELATED ID: 4JBM RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS SEQUECE WAS CAUSED BY STRAIN AKR. DBREF 4JBK A 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK B 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK C 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK D 3 199 UNP Q9R002 IFI2_MOUSE 46 242 DBREF 4JBK E 1 14 PDB 4JBK 4JBK 1 14 DBREF 4JBK F 1 14 PDB 4JBK 4JBK 1 14 DBREF 4JBK G 1 14 PDB 4JBK 4JBK 1 14 DBREF 4JBK H 1 14 PDB 4JBK 4JBK 1 14 SEQADV 4JBK MET A 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET A 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE A 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU A 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQADV 4JBK MET B 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET B 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE B 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU B 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQADV 4JBK MET C 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET C 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE C 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU C 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQADV 4JBK MET D 2 UNP Q9R002 EXPRESSION TAG SEQADV 4JBK MET D 98 UNP Q9R002 ILE 141 SEE REMARK 999 SEQADV 4JBK PHE D 99 UNP Q9R002 ILE 142 SEE REMARK 999 SEQADV 4JBK GLU D 161 UNP Q9R002 LYS 204 SEE REMARK 999 SEQRES 1 A 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 A 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 A 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 A 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 A 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 A 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 A 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 A 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 A 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 A 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 A 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 A 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 A 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 A 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 A 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 A 198 ILE LYS GLY SEQRES 1 B 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 B 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 B 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 B 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 B 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 B 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 B 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 B 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 B 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 B 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 B 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 B 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 B 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 B 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 B 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 B 198 ILE LYS GLY SEQRES 1 C 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 C 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 C 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 C 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 C 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 C 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 C 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 C 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 C 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 C 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 C 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 C 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 C 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 C 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 C 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 C 198 ILE LYS GLY SEQRES 1 D 198 MET THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 D 198 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 D 198 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 D 198 HIS ALA THR VAL ALA THR GLU SER GLN TYR TYR ARG VAL SEQRES 5 D 198 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 D 198 ASN LYS PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 D 198 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 D 198 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 D 198 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 D 198 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 D 198 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 D 198 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 D 198 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 D 198 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 D 198 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 D 198 ILE LYS GLY SEQRES 1 E 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 E 14 DC SEQRES 1 F 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 F 14 DC SEQRES 1 G 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 G 14 DC SEQRES 1 H 14 DG DG DA DA DT DT DA DT DA DA DT DT DC SEQRES 2 H 14 DC HELIX 1 1 ASN A 57 LYS A 61 5 5 HELIX 2 2 PRO A 102 GLU A 111 1 10 HELIX 3 3 LYS A 114 LYS A 119 1 6 HELIX 4 4 ASN B 57 LYS B 61 5 5 HELIX 5 5 ALA B 94 MET B 98 5 5 HELIX 6 6 PRO B 102 GLU B 111 1 10 HELIX 7 7 LYS B 114 LYS B 119 1 6 HELIX 8 8 ASN C 57 LYS C 61 5 5 HELIX 9 9 PRO C 102 GLU C 111 1 10 HELIX 10 10 LYS C 114 LYS C 119 1 6 HELIX 11 11 ASN D 57 LYS D 61 5 5 HELIX 12 12 PRO D 102 GLU D 111 1 10 HELIX 13 13 LYS D 114 LYS D 119 1 6 SHEET 1 A 8 VAL A 13 HIS A 15 0 SHEET 2 A 8 TYR A 75 SER A 78 -1 O TYR A 75 N HIS A 15 SHEET 3 A 8 ILE A 81 ILE A 84 -1 O ILE A 81 N SER A 78 SHEET 4 A 8 GLN A 49 VAL A 55 1 N LYS A 54 O LEU A 82 SHEET 5 A 8 PHE A 40 THR A 46 -1 N THR A 46 O GLN A 49 SHEET 6 A 8 MET A 19 ALA A 26 -1 N LEU A 24 O THR A 43 SHEET 7 A 8 PHE A 69 SER A 73 -1 O ILE A 72 N MET A 19 SHEET 8 A 8 THR A 89 GLU A 92 -1 O SER A 91 N THR A 71 SHEET 1 B 7 PHE A 196 LYS A 198 0 SHEET 2 B 7 LEU A 173 LYS A 182 -1 N GLN A 174 O LYS A 198 SHEET 3 B 7 PRO A 187 HIS A 190 -1 O HIS A 190 N HIS A 179 SHEET 4 B 7 ASN A 153 TRP A 158 1 N VAL A 157 O LEU A 189 SHEET 5 B 7 ILE A 143 LYS A 148 -1 N ILE A 147 O ILE A 154 SHEET 6 B 7 LEU A 126 VAL A 138 -1 N ALA A 132 O LYS A 148 SHEET 7 B 7 LEU A 173 LYS A 182 -1 O LEU A 175 N GLY A 129 SHEET 1 C 8 VAL B 13 HIS B 15 0 SHEET 2 C 8 TYR B 75 SER B 78 -1 O TYR B 75 N HIS B 15 SHEET 3 C 8 ILE B 81 ILE B 84 -1 O ILE B 81 N SER B 78 SHEET 4 C 8 TYR B 50 VAL B 55 1 N ARG B 52 O LEU B 82 SHEET 5 C 8 PHE B 40 ALA B 45 -1 N ALA B 42 O VAL B 53 SHEET 6 C 8 MET B 19 ALA B 26 -1 N LEU B 24 O THR B 43 SHEET 7 C 8 PHE B 69 SER B 73 -1 O ILE B 72 N MET B 19 SHEET 8 C 8 THR B 89 GLU B 92 -1 O SER B 91 N THR B 71 SHEET 1 D 7 PHE B 196 LYS B 198 0 SHEET 2 D 7 LYS B 172 ARG B 181 -1 N GLN B 174 O LYS B 198 SHEET 3 D 7 ILE B 188 HIS B 190 -1 O HIS B 190 N HIS B 179 SHEET 4 D 7 ASN B 153 TRP B 158 1 N VAL B 157 O LEU B 189 SHEET 5 D 7 ILE B 143 LYS B 148 -1 N ILE B 147 O ILE B 154 SHEET 6 D 7 LEU B 126 VAL B 138 -1 N LYS B 137 O THR B 144 SHEET 7 D 7 LYS B 172 ARG B 181 -1 O PHE B 178 N ILE B 127 SHEET 1 E 8 VAL C 13 HIS C 15 0 SHEET 2 E 8 TYR C 75 SER C 78 -1 O TYR C 75 N HIS C 15 SHEET 3 E 8 ILE C 81 ILE C 84 -1 O ILE C 81 N SER C 78 SHEET 4 E 8 TYR C 50 VAL C 55 1 N LYS C 54 O LEU C 82 SHEET 5 E 8 PHE C 40 ALA C 45 -1 N ALA C 42 O VAL C 53 SHEET 6 E 8 MET C 19 ALA C 26 -1 N MET C 22 O ALA C 45 SHEET 7 E 8 PHE C 69 SER C 73 -1 O ILE C 70 N VAL C 21 SHEET 8 E 8 THR C 89 GLU C 92 -1 O SER C 91 N THR C 71 SHEET 1 F 7 PHE C 196 LYS C 198 0 SHEET 2 F 7 LYS C 172 ARG C 181 -1 N GLN C 174 O LYS C 198 SHEET 3 F 7 ILE C 188 HIS C 190 -1 O HIS C 190 N HIS C 179 SHEET 4 F 7 ASN C 153 TRP C 158 1 N VAL C 157 O LEU C 189 SHEET 5 F 7 ILE C 143 LYS C 148 -1 N ILE C 147 O ILE C 154 SHEET 6 F 7 LEU C 126 VAL C 138 -1 N LYS C 137 O THR C 144 SHEET 7 F 7 LYS C 172 ARG C 181 -1 O PHE C 178 N ILE C 127 SHEET 1 G 8 VAL D 13 HIS D 15 0 SHEET 2 G 8 TYR D 75 SER D 78 -1 O ASN D 77 N VAL D 13 SHEET 3 G 8 ILE D 81 ILE D 84 -1 O ILE D 81 N SER D 78 SHEET 4 G 8 GLN D 49 VAL D 55 1 N LYS D 54 O LEU D 82 SHEET 5 G 8 PHE D 40 THR D 46 -1 N THR D 46 O GLN D 49 SHEET 6 G 8 MET D 19 ALA D 26 -1 N LEU D 24 O THR D 43 SHEET 7 G 8 PHE D 69 SER D 73 -1 O ILE D 70 N VAL D 21 SHEET 8 G 8 THR D 89 GLU D 92 -1 O SER D 91 N THR D 71 SHEET 1 H 6 LEU D 126 GLY D 129 0 SHEET 2 H 6 LEU D 175 LEU D 180 -1 O LEU D 175 N GLY D 129 SHEET 3 H 6 ILE D 188 HIS D 190 -1 O HIS D 190 N HIS D 179 SHEET 4 H 6 ASP D 152 TRP D 158 1 N LYS D 155 O LEU D 189 SHEET 5 H 6 ILE D 143 ASP D 149 -1 N PHE D 145 O VAL D 156 SHEET 6 H 6 ALA D 132 VAL D 138 -1 N LYS D 137 O THR D 144 SHEET 1 I 3 LEU D 126 GLY D 129 0 SHEET 2 I 3 LEU D 175 LEU D 180 -1 O LEU D 175 N GLY D 129 SHEET 3 I 3 PHE D 196 ILE D 197 -1 O PHE D 196 N PHE D 176 CISPEP 1 THR B 3 PRO B 4 0 -6.97 CISPEP 2 ASN D 150 GLU D 151 0 -6.31 CRYST1 106.304 109.940 106.137 90.00 120.03 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009407 0.000000 0.005438 0.00000 SCALE2 0.000000 0.009096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010883 0.00000 MASTER 412 0 0 13 62 0 0 6 0 0 0 72 END