HEADER HYDROLASE/HYDROLASE SUBSTRATE 08-FEB-13 4J5H TITLE CRYSTAL STRUCTURE OF B. THURINGIENSIS AIIA MUTANT F107W WITH N- TITLE 2 DECANOYL-L-HOMOSERINE BOUND AT THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACYL HOMOSERINE LACTONASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AHL-LACTONASE, HOMOSERINE LACTONE LACTONASE; COMPND 5 EC: 3.1.1.81; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THURINGIENSIS; SOURCE 3 ORGANISM_TAXID: 1428; SOURCE 4 GENE: AIIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL KEYWDS AIIA, LACTONASE, DIZINC HYDROLASE, SUBSTRATE SPECIFICITY, QUORUM KEYWDS 2 QUENCHING, BETA-HAIRPIN LOOPS, N-ACYL HOMOSERINE LACTONE, HYDROLASE- KEYWDS 3 HYDROLASE SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.F.LIU,D.LIU,J.MOMB,P.W.THOMAS,A.LAJOIE,G.A.PETSKO,W.FAST,D.RINGE REVDAT 1 26-JUN-13 4J5H 0 JRNL AUTH C.F.LIU,D.LIU,J.MOMB,P.W.THOMAS,A.LAJOIE,G.A.PETSKO,W.FAST, JRNL AUTH 2 D.RINGE JRNL TITL A PHENYLALANINE CLAMP CONTROLS SUBSTRATE SPECIFICITY IN THE JRNL TITL 2 QUORUM-QUENCHING METALLO-GAMMA-LACTONASE FROM BACILLUS JRNL TITL 3 THURINGIENSIS. JRNL REF BIOCHEMISTRY V. 52 1603 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23387521 JRNL DOI 10.1021/BI400050J REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 42270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.120 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2113 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1992 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.891 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2124 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2051 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2868 ; 1.520 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4766 ; 2.379 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.482 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;30.584 ;25.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 362 ;10.599 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 325 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2299 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4175 ;11.711 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 59 ;32.833 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4244 ; 9.847 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4J5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97911 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42336 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, MGCL2, GLYCEROL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.41250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.19800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.72200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.19800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.41250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.72200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 ILE A -1 REMARK 465 SER A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 43 CD OE1 OE2 REMARK 480 GLU A 200 CD OE1 OE2 REMARK 480 ARG A 244 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 82 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 95 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 161.18 67.73 REMARK 500 ILE A 142 43.61 -141.52 REMARK 500 ILE A 190 -135.08 50.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 191 OD2 REMARK 620 2 HIS A 109 NE2 99.1 REMARK 620 3 HIS A 235 NE2 130.6 115.6 REMARK 620 4 ASP A 191 OD1 54.6 98.9 84.8 REMARK 620 5 1K4 A 303 OXT 98.8 105.2 104.3 146.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 NE2 REMARK 620 2 HIS A 104 NE2 109.2 REMARK 620 3 HIS A 106 ND1 96.6 91.5 REMARK 620 4 ASP A 191 OD2 93.2 86.5 170.1 REMARK 620 5 1K4 A 303 O 112.2 137.7 91.9 83.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1K4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J5F RELATED DB: PDB REMARK 900 SAME PROTEIN WITH NO LIGAND BOUND DBREF 4J5H A 1 250 UNP A3FJ64 AHLL_BACTU 1 250 SEQADV 4J5H GLY A -3 UNP A3FJ64 EXPRESSION TAG SEQADV 4J5H ARG A -2 UNP A3FJ64 EXPRESSION TAG SEQADV 4J5H ILE A -1 UNP A3FJ64 EXPRESSION TAG SEQADV 4J5H SER A 0 UNP A3FJ64 EXPRESSION TAG SEQADV 4J5H TRP A 107 UNP A3FJ64 PHE 107 ENGINEERED MUTATION SEQRES 1 A 254 GLY ARG ILE SER MET THR VAL LYS LYS LEU TYR PHE ILE SEQRES 2 A 254 PRO ALA GLY ARG CYS MET LEU ASP HIS SER SER VAL ASN SEQRES 3 A 254 SER ALA LEU THR PRO GLY LYS LEU LEU ASN LEU PRO VAL SEQRES 4 A 254 TRP CYS TYR LEU LEU GLU THR GLU GLU GLY PRO ILE LEU SEQRES 5 A 254 VAL ASP THR GLY MET PRO GLU SER ALA VAL ASN ASN GLU SEQRES 6 A 254 GLY LEU PHE ASN GLY THR PHE VAL GLU GLY GLN ILE LEU SEQRES 7 A 254 PRO LYS MET THR GLU GLU ASP ARG ILE VAL ASN ILE LEU SEQRES 8 A 254 LYS ARG VAL GLY TYR GLU PRO ASP ASP LEU LEU TYR ILE SEQRES 9 A 254 ILE SER SER HIS LEU HIS TRP ASP HIS ALA GLY GLY ASN SEQRES 10 A 254 GLY ALA PHE THR ASN THR PRO ILE ILE VAL GLN ARG THR SEQRES 11 A 254 GLU TYR GLU ALA ALA LEU HIS ARG GLU GLU TYR MET LYS SEQRES 12 A 254 GLU CYS ILE LEU PRO HIS LEU ASN TYR LYS ILE ILE GLU SEQRES 13 A 254 GLY ASP TYR GLU VAL VAL PRO GLY VAL GLN LEU LEU TYR SEQRES 14 A 254 THR PRO GLY HIS SER PRO GLY HIS GLN SER LEU PHE ILE SEQRES 15 A 254 GLU THR GLU GLN SER GLY SER VAL LEU LEU THR ILE ASP SEQRES 16 A 254 ALA SER TYR THR LYS GLU ASN PHE GLU ASP GLU VAL PRO SEQRES 17 A 254 PHE ALA GLY PHE ASP PRO GLU LEU ALA LEU SER SER ILE SEQRES 18 A 254 LYS ARG LEU LYS GLU VAL VAL LYS LYS GLU LYS PRO ILE SEQRES 19 A 254 ILE PHE PHE GLY HIS ASP ILE GLU GLN GLU LYS SER CYS SEQRES 20 A 254 ARG VAL PHE PRO GLU TYR ILE HET ZN A 301 1 HET ZN A 302 1 HET 1K4 A 303 19 HET GOL A 304 6 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 12 HET GOL A 308 6 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HETNAM ZN ZINC ION HETNAM 1K4 N-DECANOYL-L-HOMOSERINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 1K4 C14 H27 N O4 FORMUL 5 GOL 8(C3 H8 O3) FORMUL 13 HOH *168(H2 O) HELIX 1 1 SER A 19 VAL A 21 5 3 HELIX 2 2 PRO A 54 VAL A 58 5 5 HELIX 3 3 THR A 78 ASP A 81 5 4 HELIX 4 4 ARG A 82 GLY A 91 1 10 HELIX 5 5 GLU A 93 LEU A 97 5 5 HELIX 6 6 HIS A 106 GLY A 111 1 6 HELIX 7 7 GLY A 112 PHE A 116 5 5 HELIX 8 8 ARG A 125 LEU A 132 1 8 HELIX 9 9 MET A 138 ILE A 142 5 5 HELIX 10 10 ASP A 191 SER A 193 5 3 HELIX 11 11 THR A 195 ASP A 201 1 7 HELIX 12 12 ASP A 209 LYS A 228 1 20 HELIX 13 13 ASP A 236 LYS A 241 1 6 SHEET 1 A 7 ILE A 73 LYS A 76 0 SHEET 2 A 7 LYS A 5 ASP A 17 -1 N MET A 15 O LEU A 74 SHEET 3 A 7 LEU A 30 THR A 42 -1 O LEU A 39 N TYR A 7 SHEET 4 A 7 GLY A 45 VAL A 49 -1 O VAL A 49 N TYR A 38 SHEET 5 A 7 TYR A 99 ILE A 101 1 O ILE A 101 N LEU A 48 SHEET 6 A 7 ILE A 121 GLN A 124 1 O ILE A 122 N ILE A 100 SHEET 7 A 7 TYR A 148 ILE A 151 1 O LYS A 149 N ILE A 121 SHEET 1 B 5 TYR A 155 VAL A 158 0 SHEET 2 B 5 VAL A 161 TYR A 165 -1 O LEU A 163 N TYR A 155 SHEET 3 B 5 GLN A 174 THR A 180 -1 O PHE A 177 N GLN A 162 SHEET 4 B 5 GLY A 184 ILE A 190 -1 O VAL A 186 N ILE A 178 SHEET 5 B 5 ILE A 230 PHE A 233 1 O ILE A 230 N LEU A 187 LINK OD2 ASP A 191 ZN ZN A 301 1555 1555 1.96 LINK NE2 HIS A 109 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 235 ZN ZN A 301 1555 1555 2.03 LINK NE2 HIS A 169 ZN ZN A 302 1555 1555 2.06 LINK NE2 HIS A 104 ZN ZN A 302 1555 1555 2.09 LINK ND1 HIS A 106 ZN ZN A 302 1555 1555 2.16 LINK OD2 ASP A 191 ZN ZN A 302 1555 1555 2.43 LINK OD1 ASP A 191 ZN ZN A 301 1555 1555 2.60 LINK ZN ZN A 301 OXT 1K4 A 303 1555 1555 1.79 LINK ZN ZN A 302 O 1K4 A 303 1555 1555 1.90 CISPEP 1 PHE A 246 PRO A 247 0 10.27 SITE 1 AC1 5 ASP A 108 HIS A 109 ASP A 191 HIS A 235 SITE 2 AC1 5 1K4 A 303 SITE 1 AC2 5 HIS A 104 HIS A 106 HIS A 169 ASP A 191 SITE 2 AC2 5 1K4 A 303 SITE 1 AC3 14 CYS A 14 ILE A 73 HIS A 106 TRP A 107 SITE 2 AC3 14 ASP A 108 HIS A 109 HIS A 169 ASP A 191 SITE 3 AC3 14 TYR A 194 HIS A 235 ZN A 301 ZN A 302 SITE 4 AC3 14 GOL A 310 HOH A 429 SITE 1 AC4 5 LEU A 30 ARG A 89 PHE A 246 HOH A 441 SITE 2 AC4 5 HOH A 472 SITE 1 AC5 8 ASN A 59 ASN A 60 GLU A 61 LYS A 76 SITE 2 AC5 8 MET A 77 GOL A 311 HOH A 419 HOH A 461 SITE 1 AC6 6 THR A 117 HIS A 145 ARG A 219 LYS A 226 SITE 2 AC6 6 HOH A 446 HOH A 529 SITE 1 AC7 5 ALA A 115 GLU A 152 HOH A 413 HOH A 433 SITE 2 AC7 5 HOH A 447 SITE 1 AC8 10 MET A 53 GLU A 55 ILE A 83 GLY A 111 SITE 2 AC8 10 ALA A 115 GLU A 152 HOH A 401 HOH A 421 SITE 3 AC8 10 HOH A 440 HOH A 525 SITE 1 AC9 6 GLU A 61 GLY A 62 ASN A 65 PRO A 247 SITE 2 AC9 6 GLU A 248 HOH A 555 SITE 1 BC1 7 HIS A 106 ARG A 134 GLU A 136 HIS A 169 SITE 2 BC1 7 ALA A 206 PHE A 208 1K4 A 303 SITE 1 BC2 7 LYS A 76 THR A 78 ASP A 81 GOL A 305 SITE 2 BC2 7 HOH A 438 HOH A 482 HOH A 548 CRYST1 54.825 55.444 80.396 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012438 0.00000 MASTER 369 0 11 13 12 0 25 6 0 0 0 20 END