HEADER VIRAL PROTEIN/DNA 01-FEB-13 4J1J TITLE LEANYER ORTHOBUNYAVIRUS NUCLEOPROTEIN-SSDNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOCAPSID; COMPND 3 CHAIN: D, A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(P*AP*CP*CP*AP*AP*AP*CP*AP*AP*CP*CP*CP*AP*CP*CP*CP*A)-3'); COMPND 8 CHAIN: H, I; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEANYER VIRUS; SOURCE 3 ORGANISM_TAXID: 999729; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: THIS SEQUENCE HAS BEEN DESIGNED AND THE SSDNA WAS SOURCE 9 SYNTHESISED. KEYWDS PROTEIN-DNA COMPLEX, NUCLEIC ACIDS BINDING PROTEIN, NUCLEOCAPSID KEYWDS 2 PROTEIN, VIRAL PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.NIU,N.SHAW,Y.WANG,L.JIAO,W.DING,X.LI,P.ZHU,H.UPUR,S.OUYANG,G.CHENG, AUTHOR 2 Z.J.LIU REVDAT 3 05-NOV-14 4J1J 1 TITLE REVDAT 2 12-JUN-13 4J1J 1 JRNL REVDAT 1 10-APR-13 4J1J 0 JRNL AUTH F.NIU,N.SHAW,Y.E.WANG,L.JIAO,W.DING,X.LI,P.ZHU,H.UPUR, JRNL AUTH 2 S.OUYANG,G.CHENG,Z.J.LIU JRNL TITL STRUCTURE OF THE LEANYER ORTHOBUNYAVIRUS NUCLEOPROTEIN-RNA JRNL TITL 2 COMPLEX REVEALS UNIQUE ARCHITECTURE FOR RNA ENCAPSIDATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 9054 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23569220 JRNL DOI 10.1073/PNAS.1300035110 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 27429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.3395 - 6.3764 0.98 1912 149 0.1949 0.2146 REMARK 3 2 6.3764 - 5.0637 0.95 1838 145 0.2187 0.2884 REMARK 3 3 5.0637 - 4.4243 0.97 1896 149 0.1997 0.1836 REMARK 3 4 4.4243 - 4.0201 0.97 1885 148 0.1988 0.1842 REMARK 3 5 4.0201 - 3.7321 0.98 1907 150 0.1915 0.2247 REMARK 3 6 3.7321 - 3.5122 0.97 1876 147 0.2183 0.2177 REMARK 3 7 3.5122 - 3.3364 0.98 1886 149 0.2324 0.2521 REMARK 3 8 3.3364 - 3.1912 0.98 1913 150 0.2475 0.3127 REMARK 3 9 3.1912 - 3.0684 0.98 1902 149 0.2549 0.2835 REMARK 3 10 3.0684 - 2.9625 0.96 1863 145 0.2914 0.3255 REMARK 3 11 2.9625 - 2.8699 0.93 1830 144 0.2838 0.2958 REMARK 3 12 2.8699 - 2.7879 0.91 1744 137 0.2864 0.3485 REMARK 3 13 2.7879 - 2.7145 0.87 1667 131 0.2958 0.3137 REMARK 3 14 2.7145 - 2.6483 0.68 1314 103 0.3229 0.3633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8259 REMARK 3 ANGLE : 1.282 11297 REMARK 3 CHIRALITY : 0.078 1244 REMARK 3 PLANARITY : 0.008 1336 REMARK 3 DIHEDRAL : 17.352 3071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4J1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB077478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27429 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 43.330 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 4J1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M TRIS-HCL REMARK 280 (PH 7.5) AND 20% W/V PEG5000 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, C, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 PRO D 5 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 MET C 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG C 84 N4 DC H 16 1.76 REMARK 500 NH2 ARG C 84 N4 DC H 16 1.79 REMARK 500 N VAL D 16 O HOH D 305 1.82 REMARK 500 O HOH B 301 O HOH B 308 1.85 REMARK 500 N ARG D 82 O HOH D 309 1.86 REMARK 500 O MET C 27 O HOH C 307 1.86 REMARK 500 CZ ARG C 84 N4 DC H 16 1.87 REMARK 500 O VAL D 16 O HOH D 305 1.87 REMARK 500 NE ARG C 43 O HOH C 302 1.87 REMARK 500 OE2 GLU A 23 O HOH A 303 1.90 REMARK 500 NH2 ARG C 43 O HOH C 302 1.93 REMARK 500 O VAL B 88 O HOH B 302 2.00 REMARK 500 O HIS B 79 O HOH B 309 2.01 REMARK 500 N6 DA H 5 O HOH H 103 2.02 REMARK 500 N ALA D 14 O HOH D 317 2.05 REMARK 500 NZ LYS D 121 O HOH D 318 2.06 REMARK 500 O ALA B 223 O HOH B 306 2.07 REMARK 500 CA ALA B 223 O HOH B 306 2.09 REMARK 500 N ARG D 186 O HOH D 306 2.09 REMARK 500 OD1 ASN A 48 NH2 ARG B 12 2.10 REMARK 500 NH1 ARG C 43 O LYS C 123 2.10 REMARK 500 OE1 GLN C 185 O HOH C 309 2.12 REMARK 500 CZ ARG C 43 O HOH C 302 2.14 REMARK 500 NZ LYS D 53 OP2 DA I 13 2.14 REMARK 500 C PRO D 13 O HOH D 317 2.15 REMARK 500 O ASP D 6 NH1 ARG C 72 2.17 REMARK 500 OD2 ASP B 175 OG1 THR B 177 2.18 REMARK 500 N TRP D 136 O HOH D 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC H 15 O3' DC H 15 C3' -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 13 C - N - CD ANGL. DEV. = 13.5 DEGREES REMARK 500 PRO A 87 C - N - CD ANGL. DEV. = 12.7 DEGREES REMARK 500 DA H 4 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA H 8 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC H 12 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA H 13 O4' - C1' - N9 ANGL. DEV. = 9.1 DEGREES REMARK 500 DA H 13 O3' - P - OP2 ANGL. DEV. = 6.9 DEGREES REMARK 500 DC H 14 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC H 16 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DC H 16 O4' - C1' - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DA H 17 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA H 17 O4' - C1' - N9 ANGL. DEV. = 8.8 DEGREES REMARK 500 DA I 1 O4' - C1' - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 DC I 2 O4' - C1' - N1 ANGL. DEV. = 6.6 DEGREES REMARK 500 DC I 3 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA I 5 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA I 6 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC I 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC I 10 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC I 11 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC I 12 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA I 13 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC I 14 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC I 15 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 13 -121.68 -88.47 REMARK 500 ALA D 14 -161.13 -165.63 REMARK 500 TRP D 215 -115.58 62.94 REMARK 500 PRO A 13 -109.18 -94.33 REMARK 500 ASN A 83 -0.34 81.63 REMARK 500 TRP A 215 -113.50 63.59 REMARK 500 TRP C 215 -120.54 61.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 9 ASP A 10 149.99 REMARK 500 ASP A 11 ARG A 12 -67.34 REMARK 500 ASP A 85 ASN A 86 -69.31 REMARK 500 PRO B 13 ALA B 14 -132.52 REMARK 500 ALA B 218 GLY B 219 41.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ALA B 14 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4J1G RELATED DB: PDB DBREF 4J1J D 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1J A 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1J B 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1J C 1 235 UNP F2WAD7 F2WAD7_9VIRU 1 235 DBREF 4J1J H 1 17 PDB 4J1J 4J1J 1 17 DBREF 4J1J I 1 17 PDB 4J1J 4J1J 1 17 SEQRES 1 D 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 D 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 D 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 D 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 D 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 D 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 D 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 D 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 D 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 D 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 D 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 D 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 D 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 D 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 D 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 D 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 D 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 D 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 D 235 VAL SEQRES 1 A 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 A 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 A 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 A 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 A 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 A 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 A 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 A 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 A 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 A 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 A 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 A 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 A 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 A 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 A 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 A 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 A 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 A 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 A 235 VAL SEQRES 1 B 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 B 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 B 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 B 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 B 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 B 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 B 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 B 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 B 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 B 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 B 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 B 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 B 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 B 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 B 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 B 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 B 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 B 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 B 235 VAL SEQRES 1 C 235 MET SER THR GLY PRO ASP PHE ILE TYR ASP ASP ARG PRO SEQRES 2 C 235 ALA ALA VAL SER SER THR PHE ASN PRO GLU LYS GLY TYR SEQRES 3 C 235 MET ASP PHE ILE THR ALA TYR GLY LYS ASN ILE ASN ALA SEQRES 4 C 235 ASP ASN VAL ARG ILE PHE PHE LEU ASN HIS LYS LYS ALA SEQRES 5 C 235 LYS ASP SER LEU LYS GLY SER PRO LYS VAL GLU VAL ASP SEQRES 6 C 235 LEU GLN PHE GLY THR LEU ARG VAL LYS VAL VAL ASN ASN SEQRES 7 C 235 HIS ASN PRO ARG ASN ARG ASP ASN PRO VAL ALA ASP ASN SEQRES 8 C 235 ALA ILE THR LEU HIS ARG LEU SER GLY TYR LEU ALA LYS SEQRES 9 C 235 TRP CYS PHE ASP GLU ILE ASP HIS GLY GLN ILE GLU GLU SEQRES 10 C 235 ALA GLU VAL LYS SER LYS VAL VAL ILE PRO LEU ALA GLU SEQRES 11 C 235 ALA LYS GLY CYS LYS TRP GLY ASP GLY VAL ALA LEU TYR SEQRES 12 C 235 LEU ALA PHE ALA PRO GLY ALA GLU MET PHE LEU LYS ASP SEQRES 13 C 235 PHE GLU PHE TYR PRO LEU ALA ILE ASP ILE GLN ARG VAL SEQRES 14 C 235 VAL LYS ASP GLY MET ASP ILE THR PHE MET ARG LYS VAL SEQRES 15 C 235 LEU LYS GLN ARG TYR GLY THR LYS THR ALA ASP ASP TRP SEQRES 16 C 235 MET ILE SER GLU VAL THR ALA ILE GLN SER ALA VAL LYS SEQRES 17 C 235 VAL VAL ALA LYS LEU PRO TRP ALA LYS ALA GLY PHE THR SEQRES 18 C 235 ALA ALA ALA LYS ASN PHE LEU ALA LYS PHE ASN ILE SER SEQRES 19 C 235 VAL SEQRES 1 H 17 DA DC DC DA DA DA DC DA DA DC DC DC DA SEQRES 2 H 17 DC DC DC DA SEQRES 1 I 17 DA DC DC DA DA DA DC DA DA DC DC DC DA SEQRES 2 I 17 DC DC DC DA FORMUL 7 HOH *68(H2 O) HELIX 1 1 ASN D 21 GLY D 34 1 14 HELIX 2 2 LYS D 35 ILE D 37 5 3 HELIX 3 3 ASN D 38 SER D 59 1 22 HELIX 4 4 THR D 94 HIS D 112 1 19 HELIX 5 5 GLY D 113 VAL D 124 1 12 HELIX 6 6 ILE D 126 ALA D 131 1 6 HELIX 7 7 LYS D 135 ASP D 138 5 4 HELIX 8 8 GLY D 139 PHE D 146 1 8 HELIX 9 9 GLY D 149 LEU D 154 5 6 HELIX 10 10 PHE D 159 LYS D 171 1 13 HELIX 11 11 ASP D 175 ARG D 180 5 6 HELIX 12 12 THR D 191 GLU D 199 1 9 HELIX 13 13 GLU D 199 LYS D 212 1 14 HELIX 14 14 LEU D 213 ALA D 218 5 6 HELIX 15 15 THR D 221 LYS D 230 1 10 HELIX 16 16 ASN A 21 GLY A 34 1 14 HELIX 17 17 LYS A 35 ILE A 37 5 3 HELIX 18 18 ASN A 38 SER A 59 1 22 HELIX 19 19 THR A 94 HIS A 112 1 19 HELIX 20 20 GLY A 113 VAL A 124 1 12 HELIX 21 21 ILE A 126 ALA A 131 1 6 HELIX 22 22 LYS A 135 ASP A 138 5 4 HELIX 23 23 GLY A 139 PHE A 146 1 8 HELIX 24 24 GLY A 149 LEU A 154 5 6 HELIX 25 25 PHE A 159 GLY A 173 1 15 HELIX 26 26 ASP A 175 ARG A 180 5 6 HELIX 27 27 THR A 191 GLU A 199 1 9 HELIX 28 28 GLU A 199 LYS A 212 1 14 HELIX 29 29 LEU A 213 ALA A 218 5 6 HELIX 30 30 THR A 221 LYS A 230 1 10 HELIX 31 31 ASN B 21 GLY B 34 1 14 HELIX 32 32 LYS B 35 ILE B 37 5 3 HELIX 33 33 ASN B 38 SER B 59 1 22 HELIX 34 34 THR B 94 HIS B 112 1 19 HELIX 35 35 GLY B 113 VAL B 124 1 12 HELIX 36 36 ILE B 126 ALA B 131 1 6 HELIX 37 37 LYS B 135 ASP B 138 5 4 HELIX 38 38 GLY B 139 PHE B 146 1 8 HELIX 39 39 GLY B 149 LEU B 154 5 6 HELIX 40 40 PHE B 159 LYS B 171 1 13 HELIX 41 41 ASP B 175 ARG B 180 5 6 HELIX 42 42 THR B 191 GLU B 199 1 9 HELIX 43 43 GLU B 199 LYS B 212 1 14 HELIX 44 44 THR B 221 LYS B 230 1 10 HELIX 45 45 ASN C 21 GLY C 34 1 14 HELIX 46 46 LYS C 35 ILE C 37 5 3 HELIX 47 47 ASN C 38 SER C 59 1 22 HELIX 48 48 ARG C 82 ASN C 86 5 5 HELIX 49 49 THR C 94 HIS C 112 1 19 HELIX 50 50 GLY C 113 VAL C 124 1 12 HELIX 51 51 ILE C 126 ALA C 131 1 6 HELIX 52 52 LYS C 135 ASP C 138 5 4 HELIX 53 53 GLY C 139 ALA C 145 1 7 HELIX 54 54 GLY C 149 LEU C 154 5 6 HELIX 55 55 PHE C 159 LYS C 171 1 13 HELIX 56 56 ASP C 175 ARG C 180 5 6 HELIX 57 57 THR C 191 GLU C 199 1 9 HELIX 58 58 GLU C 199 LYS C 212 1 14 HELIX 59 59 LEU C 213 ALA C 218 5 6 HELIX 60 60 THR C 221 LYS C 230 1 10 SHEET 1 A 3 ILE D 8 ASP D 10 0 SHEET 2 A 3 GLU C 63 PHE C 68 1 O GLN C 67 N ILE D 8 SHEET 3 A 3 LEU C 71 VAL C 76 -1 O LEU C 71 N PHE C 68 SHEET 1 B 3 LEU D 71 VAL D 76 0 SHEET 2 B 3 GLU D 63 PHE D 68 -1 N PHE D 68 O LEU D 71 SHEET 3 B 3 PHE A 7 TYR A 9 1 O TYR A 9 N GLN D 67 SHEET 1 C 3 LEU A 71 VAL A 76 0 SHEET 2 C 3 GLU A 63 PHE A 68 -1 N VAL A 64 O VAL A 75 SHEET 3 C 3 PHE B 7 TYR B 9 1 O TYR B 9 N GLN A 67 SHEET 1 D 3 LEU B 71 VAL B 76 0 SHEET 2 D 3 GLU B 63 PHE B 68 -1 N VAL B 64 O VAL B 75 SHEET 3 D 3 PHE C 7 TYR C 9 1 O TYR C 9 N GLN B 67 CISPEP 1 ASP D 6 PHE D 7 0 -14.39 CISPEP 2 SER D 234 VAL D 235 0 19.60 CISPEP 3 THR A 3 GLY A 4 0 -9.01 CISPEP 4 ALA B 14 ALA B 15 0 -18.69 CISPEP 5 ALA C 14 ALA C 15 0 5.14 CISPEP 6 ALA C 218 GLY C 219 0 -0.26 CRYST1 50.403 73.199 77.905 70.89 82.54 73.73 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019840 -0.005789 -0.000870 0.00000 SCALE2 0.000000 0.014231 -0.004569 0.00000 SCALE3 0.000000 0.000000 0.013597 0.00000 MASTER 368 0 0 60 12 0 0 6 0 0 0 80 END