HEADER VIRAL PROTEIN 29-DEC-12 4IL7 TITLE CRYSTAL STRUCTURE OF A223 C-TERMINAL DOMAIN, A STRUCTURAL PROTEIN FROM TITLE 2 SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS (STIV) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOTHETICAL PROTEIN A223; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS; SOURCE 3 ORGANISM_TAXID: 269145; SOURCE 4 GENE: A223; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST14 KEYWDS PARTIAL JELLY ROLL FOLD, HYPOTHETICAL PROTEIN, C381 AND B345, VIRAL KEYWDS 2 CAPSID, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.K.SENDAMARAI,C.M.LAWRENCE REVDAT 2 01-MAY-13 4IL7 1 JRNL REVDAT 1 03-APR-13 4IL7 0 JRNL AUTH D.VEESLER,T.S.NG,A.K.SENDAMARAI,B.J.EILERS,C.M.LAWRENCE, JRNL AUTH 2 S.M.LOK,M.J.YOUNG,J.E.JOHNSON,C.Y.FU JRNL TITL ATOMIC STRUCTURE OF THE 75 MDA EXTREMOPHILE SULFOLOBUS JRNL TITL 2 TURRETED ICOSAHEDRAL VIRUS DETERMINED BY CRYOEM AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 5504 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23520050 JRNL DOI 10.1073/PNAS.1300601110 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 19450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1523 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.1780 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 631 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.47000 REMARK 3 B22 (A**2) : -0.47000 REMARK 3 B33 (A**2) : 1.52000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.711 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 759 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 700 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1058 ; 1.939 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1628 ; 1.758 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 110 ; 6.876 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ;42.490 ;27.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 126 ;11.597 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 131 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 934 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 170 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1459 ; 3.785 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 30 ;36.541 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1507 ; 9.655 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6274 19.5991 -0.5892 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0758 REMARK 3 T33: 0.0858 T12: 0.0070 REMARK 3 T13: 0.0332 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 4.7980 L22: 11.0876 REMARK 3 L33: 5.4353 L12: -0.7077 REMARK 3 L13: -0.8028 L23: -4.9117 REMARK 3 S TENSOR REMARK 3 S11: -0.1257 S12: 0.0599 S13: -0.5305 REMARK 3 S21: -0.1494 S22: -0.0156 S23: 0.2331 REMARK 3 S31: 0.2843 S32: -0.1822 S33: 0.1413 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7780 32.5873 -1.9725 REMARK 3 T TENSOR REMARK 3 T11: 0.0698 T22: 0.0856 REMARK 3 T33: 0.0266 T12: 0.0159 REMARK 3 T13: 0.0039 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.7096 L22: 7.7042 REMARK 3 L33: 1.1549 L12: 1.4212 REMARK 3 L13: -0.0739 L23: 0.6937 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: 0.0877 S13: 0.0796 REMARK 3 S21: -0.0619 S22: -0.1100 S23: -0.1873 REMARK 3 S31: 0.0670 S32: -0.0298 S33: 0.0387 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 151 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4593 23.4309 -3.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.1805 T22: 0.3210 REMARK 3 T33: 0.2775 T12: -0.0225 REMARK 3 T13: 0.0769 T23: -0.2362 REMARK 3 L TENSOR REMARK 3 L11: 3.2016 L22: 8.4159 REMARK 3 L33: 2.2023 L12: 4.1220 REMARK 3 L13: -0.4376 L23: -2.1135 REMARK 3 S TENSOR REMARK 3 S11: -0.5402 S12: 0.4867 S13: -0.5112 REMARK 3 S21: -0.5284 S22: 0.1746 S23: -0.3792 REMARK 3 S31: -0.0742 S32: -0.2774 S33: 0.3656 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 159 A 165 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6394 20.3458 8.0066 REMARK 3 T TENSOR REMARK 3 T11: 0.0794 T22: 0.1030 REMARK 3 T33: 0.1477 T12: 0.0225 REMARK 3 T13: 0.0683 T23: 0.0524 REMARK 3 L TENSOR REMARK 3 L11: 9.0732 L22: 7.8952 REMARK 3 L33: 1.6397 L12: 6.0315 REMARK 3 L13: -0.0388 L23: -1.1287 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.4977 S13: -0.5214 REMARK 3 S21: 0.2256 S22: -0.0279 S23: 0.1495 REMARK 3 S31: 0.1014 S32: -0.0187 S33: 0.0912 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 166 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4618 34.5883 9.1997 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.1940 REMARK 3 T33: 0.3080 T12: 0.0202 REMARK 3 T13: -0.0786 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 8.6654 L22: 3.0777 REMARK 3 L33: 1.7049 L12: 5.1386 REMARK 3 L13: 3.8349 L23: 2.2885 REMARK 3 S TENSOR REMARK 3 S11: 0.1322 S12: -0.1409 S13: 0.1616 REMARK 3 S21: 0.1383 S22: -0.1169 S23: 0.0012 REMARK 3 S31: 0.0842 S32: -0.0660 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 3.6801 35.4311 9.4533 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.1171 REMARK 3 T33: 0.0411 T12: -0.0090 REMARK 3 T13: 0.0161 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 5.6072 L22: 1.7074 REMARK 3 L33: 3.8109 L12: -1.1126 REMARK 3 L13: 1.9938 L23: 0.2260 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: -0.1811 S13: 0.2733 REMARK 3 S21: 0.1458 S22: 0.0139 S23: -0.0041 REMARK 3 S31: -0.0457 S32: -0.0007 S33: 0.0761 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4800 26.1243 3.4467 REMARK 3 T TENSOR REMARK 3 T11: 0.0942 T22: 0.1427 REMARK 3 T33: 0.1316 T12: -0.0245 REMARK 3 T13: -0.0017 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 12.7780 L22: 0.8016 REMARK 3 L33: 1.2984 L12: 2.7392 REMARK 3 L13: 0.0411 L23: -0.5140 REMARK 3 S TENSOR REMARK 3 S11: -0.1794 S12: 0.1942 S13: -0.2090 REMARK 3 S21: -0.0886 S22: 0.1157 S23: -0.0531 REMARK 3 S31: 0.1011 S32: -0.1243 S33: 0.0636 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 188 REMARK 3 ORIGIN FOR THE GROUP (A): -7.6347 29.2142 8.0838 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.1107 REMARK 3 T33: 0.0680 T12: -0.0167 REMARK 3 T13: 0.0203 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 11.1177 L22: 2.1807 REMARK 3 L33: 4.2908 L12: 3.3653 REMARK 3 L13: 6.8605 L23: 2.3273 REMARK 3 S TENSOR REMARK 3 S11: 0.1373 S12: -0.0674 S13: -0.1560 REMARK 3 S21: 0.0176 S22: -0.0740 S23: 0.0655 REMARK 3 S31: 0.0795 S32: -0.0712 S33: -0.0633 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 189 A 194 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8656 30.8711 12.0472 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1291 REMARK 3 T33: 0.0514 T12: 0.0182 REMARK 3 T13: -0.0124 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 10.5096 L22: 0.9578 REMARK 3 L33: 3.6580 L12: -2.5247 REMARK 3 L13: 0.3022 L23: 0.8276 REMARK 3 S TENSOR REMARK 3 S11: -0.1717 S12: -0.3680 S13: -0.1881 REMARK 3 S21: 0.2509 S22: 0.1558 S23: 0.0387 REMARK 3 S31: 0.2595 S32: 0.3017 S33: 0.0159 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1206 20.9985 7.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.1126 REMARK 3 T33: 0.1477 T12: 0.0037 REMARK 3 T13: 0.0636 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 7.4194 L22: 4.0963 REMARK 3 L33: 3.8640 L12: 2.0672 REMARK 3 L13: 3.1343 L23: 1.7235 REMARK 3 S TENSOR REMARK 3 S11: -0.0072 S12: -0.5252 S13: -0.5288 REMARK 3 S21: 0.1720 S22: -0.1194 S23: 0.1864 REMARK 3 S31: 0.1388 S32: -0.2395 S33: 0.1267 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5338 29.4491 0.1722 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: 0.0807 REMARK 3 T33: 0.0278 T12: 0.0126 REMARK 3 T13: 0.0019 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 10.7937 L22: 9.9650 REMARK 3 L33: 2.6537 L12: 4.2745 REMARK 3 L13: 0.2155 L23: -1.5253 REMARK 3 S TENSOR REMARK 3 S11: -0.1836 S12: 0.3350 S13: 0.0286 REMARK 3 S21: -0.2364 S22: 0.1006 S23: 0.3311 REMARK 3 S31: -0.0041 S32: -0.1538 S33: 0.0830 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6980 37.3935 3.8037 REMARK 3 T TENSOR REMARK 3 T11: 0.0434 T22: 0.0662 REMARK 3 T33: 0.0481 T12: -0.0021 REMARK 3 T13: -0.0047 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 3.9238 L22: 3.5864 REMARK 3 L33: 2.9877 L12: -1.4002 REMARK 3 L13: 0.3199 L23: 0.3609 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: -0.2415 S13: 0.3431 REMARK 3 S21: 0.0805 S22: -0.0283 S23: -0.1556 REMARK 3 S31: -0.1658 S32: 0.0330 S33: -0.0220 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 221 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9117 21.6109 4.1949 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0648 REMARK 3 T33: 0.0750 T12: 0.0231 REMARK 3 T13: 0.0388 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 4.7070 L22: 5.9300 REMARK 3 L33: 1.5006 L12: 2.0259 REMARK 3 L13: -0.7126 L23: -0.3353 REMARK 3 S TENSOR REMARK 3 S11: -0.1831 S12: -0.2323 S13: -0.3783 REMARK 3 S21: 0.2094 S22: -0.0112 S23: 0.0631 REMARK 3 S31: 0.0598 S32: 0.0068 S33: 0.1943 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4IL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-13. REMARK 100 THE RCSB ID CODE IS RCSB076891. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02800 REMARK 200 FOR THE DATA SET : 23.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15%V/V 2-PROPANOL, 5-10%W/V REMARK 280 POLYETHYLENE GLYCOL 4,000, 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 5.6 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.11533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.55767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.55767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.11533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 64 REMARK 465 SER A 65 REMARK 465 HIS A 66 REMARK 465 GLU A 67 REMARK 465 GLY A 68 REMARK 465 LEU A 69 REMARK 465 SER A 70 REMARK 465 PRO A 71 REMARK 465 ILE A 72 REMARK 465 PRO A 73 REMARK 465 GLY A 74 REMARK 465 GLU A 75 REMARK 465 GLY A 76 REMARK 465 THR A 77 REMARK 465 GLY A 78 REMARK 465 ILE A 79 REMARK 465 GLN A 80 REMARK 465 LEU A 81 REMARK 465 SER A 82 REMARK 465 ALA A 83 REMARK 465 GLY A 84 REMARK 465 GLN A 85 REMARK 465 ILE A 86 REMARK 465 LEU A 87 REMARK 465 LYS A 88 REMARK 465 PHE A 89 REMARK 465 TYR A 90 REMARK 465 ASN A 91 REMARK 465 VAL A 92 REMARK 465 PRO A 93 REMARK 465 ILE A 94 REMARK 465 ALA A 95 REMARK 465 GLU A 96 REMARK 465 ILE A 97 REMARK 465 ILE A 98 REMARK 465 VAL A 99 REMARK 465 GLU A 100 REMARK 465 TYR A 101 REMARK 465 ASP A 102 REMARK 465 PRO A 103 REMARK 465 SER A 104 REMARK 465 ASN A 105 REMARK 465 VAL A 106 REMARK 465 SER A 107 REMARK 465 GLY A 108 REMARK 465 VAL A 109 REMARK 465 SER A 110 REMARK 465 SER A 111 REMARK 465 ASN A 112 REMARK 465 VAL A 113 REMARK 465 LYS A 114 REMARK 465 LEU A 115 REMARK 465 LYS A 116 REMARK 465 GLY A 117 REMARK 465 THR A 118 REMARK 465 ILE A 119 REMARK 465 HIS A 120 REMARK 465 PRO A 121 REMARK 465 LEU A 122 REMARK 465 PHE A 123 REMARK 465 GLU A 124 REMARK 465 VAL A 125 REMARK 465 PRO A 126 REMARK 465 SER A 127 REMARK 465 GLN A 128 REMARK 465 ILE A 129 REMARK 465 SER A 130 REMARK 465 ILE A 131 REMARK 465 GLU A 132 REMARK 465 ASN A 133 REMARK 465 PHE A 134 REMARK 465 GLN A 135 REMARK 465 PRO A 136 REMARK 465 THR A 137 REMARK 465 ILE A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 HIS A 227 REMARK 465 HIS A 228 REMARK 465 HIS A 229 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 VAL A 222 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 329 O HOH A 381 1.68 REMARK 500 O HOH A 352 O HOH A 365 1.77 REMARK 500 O HOH A 308 O HOH A 382 1.94 REMARK 500 O HOH A 308 O HOH A 381 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 308 O HOH A 307 2664 1.74 REMARK 500 O HOH A 397 O HOH A 360 2664 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 212 CB SER A 212 OG -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 350 DISTANCE = 6.62 ANGSTROMS DBREF 4IL7 A 65 223 UNP Q6Q0L4 Q6Q0L4_9VIRU 65 223 SEQADV 4IL7 MET A 64 UNP Q6Q0L4 EXPRESSION TAG SEQADV 4IL7 MET A 208 UNP Q6Q0L4 LEU 208 ENGINEERED MUTATION SEQADV 4IL7 HIS A 224 UNP Q6Q0L4 EXPRESSION TAG SEQADV 4IL7 HIS A 225 UNP Q6Q0L4 EXPRESSION TAG SEQADV 4IL7 HIS A 226 UNP Q6Q0L4 EXPRESSION TAG SEQADV 4IL7 HIS A 227 UNP Q6Q0L4 EXPRESSION TAG SEQADV 4IL7 HIS A 228 UNP Q6Q0L4 EXPRESSION TAG SEQADV 4IL7 HIS A 229 UNP Q6Q0L4 EXPRESSION TAG SEQRES 1 A 166 MET SER HIS GLU GLY LEU SER PRO ILE PRO GLY GLU GLY SEQRES 2 A 166 THR GLY ILE GLN LEU SER ALA GLY GLN ILE LEU LYS PHE SEQRES 3 A 166 TYR ASN VAL PRO ILE ALA GLU ILE ILE VAL GLU TYR ASP SEQRES 4 A 166 PRO SER ASN VAL SER GLY VAL SER SER ASN VAL LYS LEU SEQRES 5 A 166 LYS GLY THR ILE HIS PRO LEU PHE GLU VAL PRO SER GLN SEQRES 6 A 166 ILE SER ILE GLU ASN PHE GLN PRO THR GLU ASN TYR LEU SEQRES 7 A 166 ILE TYR SER GLY PHE GLY THR SER LEU PRO GLN THR TYR SEQRES 8 A 166 THR ILE PRO ALA ASN GLY TYR LEU ILE ILE SER ILE THR SEQRES 9 A 166 ASN THR SER THR GLY ASN ILE GLY GLN ILE THR LEU THR SEQRES 10 A 166 ILE GLY SER THR THR MET THR PHE ASN LEU GLN THR GLY SEQRES 11 A 166 GLU ASN LYS ILE PRO VAL ILE ALA GLY THR GLN ILE THR SEQRES 12 A 166 ASN MET THR LEU THR SER SER SER ALA ILE LEU ILE TYR SEQRES 13 A 166 GLU GLU VAL ILE HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *102(H2 O) SHEET 1 A 4 ASN A 139 SER A 149 0 SHEET 2 A 4 GLN A 204 GLU A 221 -1 O ILE A 216 N GLY A 145 SHEET 3 A 4 ASN A 173 ILE A 181 -1 N THR A 180 O GLN A 204 SHEET 4 A 4 THR A 184 GLN A 191 -1 O LEU A 190 N ILE A 174 SHEET 1 B 4 TYR A 154 THR A 155 0 SHEET 2 B 4 GLN A 204 GLU A 221 -1 O ILE A 205 N TYR A 154 SHEET 3 B 4 GLY A 160 THR A 167 -1 N SER A 165 O LEU A 217 SHEET 4 B 4 GLY A 193 VAL A 199 -1 O GLY A 193 N ILE A 166 CRYST1 65.853 65.853 43.673 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015185 0.008767 0.000000 0.00000 SCALE2 0.000000 0.017535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022897 0.00000 MASTER 634 0 0 0 8 0 0 6 0 0 0 13 END