HEADER HYDROLASE/HYDROLASE INHIBITOR 23-NOV-12 4I31 TITLE CRYSTAL STRUCTURE OF HCV NS3/NS4A PROTEASE COMPLEXED WITH COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NS3 PROTEASE DOMAIN (UNP RESIDUES 1027-1206); COMPND 5 SYNONYM: CORE PROTEIN P21, CAPSID PROTEIN C, P21, CORE PROTEIN P19, COMPND 6 ENVELOPE GLYCOPROTEIN E1, GP32, GP35, ENVELOPE GLYCOPROTEIN E2, NS1, COMPND 7 GP68, GP70, P7, PROTEASE NS2-3, P23, SERINE PROTEASE NS3, COMPND 8 HEPACIVIRIN, NS3P, P70, NON-STRUCTURAL PROTEIN 4A, NS4A, P8, NON- COMPND 9 STRUCTURAL PROTEIN 4B, NS4B, P27, NON-STRUCTURAL PROTEIN 5A, NS5A, COMPND 10 P56, RNA-DIRECTED RNA POLYMERASE, NS5B, P68; COMPND 11 EC: 3.4.22.-, 3.4.21.98, 3.6.1.15, 3.6.4.13, 2.7.7.48; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: HCV NON-STRUCTURAL PROTEIN 4A; COMPND 15 CHAIN: C, D; COMPND 16 FRAGMENT: NS3 INTERACTING PEPTIDE (UNP RESIDUES 1678-1691); COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 3 ORGANISM_COMMON: HCV; SOURCE 4 ORGANISM_TAXID: 11116; SOURCE 5 STRAIN: ISOLATE JAPANESE; SOURCE 6 GENE: POLG_HCVJA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS; SOURCE 12 ORGANISM_COMMON: HCV; SOURCE 13 ORGANISM_TAXID: 11116; SOURCE 14 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS HEPATITIS C VIRUS, NS3, NS4A, PROTEIN-INHIBITOR COMPLEX COMPOUND 4, KEYWDS 2 SERINE PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.T.LEMKE REVDAT 3 13-MAR-13 4I31 1 JRNL REVDAT 2 09-JAN-13 4I31 1 JRNL REVDAT 1 02-JAN-13 4I31 0 JRNL AUTH J.A.O'MEARA,C.T.LEMKE,C.GODBOUT,G.KUKOLJ,L.LAGACE,B.MOREAU, JRNL AUTH 2 D.THIBEAULT,P.W.WHITE,M.LLINAS-BRUNET JRNL TITL MOLECULAR MECHANISM BY WHICH A POTENT HEPATITIS C VIRUS JRNL TITL 2 NS3-NS4A PROTEASE INHIBITOR OVERCOMES EMERGENCE OF JRNL TITL 3 RESISTANCE. JRNL REF J.BIOL.CHEM. V. 288 5673 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23271737 JRNL DOI 10.1074/JBC.M112.439455 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5474 - 4.2904 0.99 2727 134 0.1979 0.2028 REMARK 3 2 4.2904 - 3.4062 1.00 2713 139 0.1916 0.2290 REMARK 3 3 3.4062 - 2.9759 1.00 2683 162 0.2025 0.2710 REMARK 3 4 2.9759 - 2.7039 1.00 2681 149 0.2190 0.2273 REMARK 3 5 2.7039 - 2.5101 1.00 2686 140 0.2395 0.2850 REMARK 3 6 2.5101 - 2.3622 0.99 2655 133 0.2461 0.2936 REMARK 3 7 2.3622 - 2.2439 0.99 2669 132 0.2401 0.2761 REMARK 3 8 2.2439 - 2.1462 0.99 2661 134 0.2582 0.2899 REMARK 3 9 2.1462 - 2.0636 0.98 2614 152 0.2913 0.3157 REMARK 3 10 2.0636 - 1.9924 0.97 2586 145 0.3287 0.3224 REMARK 3 11 1.9924 - 1.9301 0.95 2540 137 0.3725 0.4339 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 55.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.59770 REMARK 3 B22 (A**2) : -2.59770 REMARK 3 B33 (A**2) : 5.19530 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3030 REMARK 3 ANGLE : 1.374 4145 REMARK 3 CHIRALITY : 0.087 483 REMARK 3 PLANARITY : 0.006 522 REMARK 3 DIHEDRAL : 15.175 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4I31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB076240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX-HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX SX-165MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31114 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 57.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.560 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.86 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M NACL, 0.1M NA CITRATE PH6, 2.5% T- REMARK 280 BUTANOL, 20MM OBG, 5MM DTT, 3MM SODIUM AZIDE, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.35833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.71667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.03750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 68.39583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.67917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 LYS A 186 REMARK 465 MET B 0 REMARK 465 LYS B 183 REMARK 465 LYS B 184 REMARK 465 LYS B 185 REMARK 465 LYS B 186 REMARK 465 LYS C 219 REMARK 465 GLY C 233 REMARK 465 ARG C 234 REMARK 465 LYS C 235 REMARK 465 LYS D 219 REMARK 465 GLY D 233 REMARK 465 ARG D 234 REMARK 465 LYS D 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 SER A 182 OG REMARK 470 ARG B 180 CG CD NE CZ NH1 NH2 REMARK 470 SER B 182 OG REMARK 470 LYS C 220 CB CG CD CE NZ REMARK 470 LYS D 220 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS B 99 -78.88 -136.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 98 CYS B 99 -45.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 111 O REMARK 620 2 ALA A 5 O 86.5 REMARK 620 3 HOH A 306 O 96.1 79.3 REMARK 620 4 HOH A 325 O 98.4 169.6 91.1 REMARK 620 5 HOH A 327 O 155.9 71.2 88.7 105.1 REMARK 620 6 HOH A 340 O 100.0 84.9 156.6 103.1 69.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 111 O REMARK 620 2 ALA B 5 O 87.2 REMARK 620 3 HOH B 331 O 87.7 173.6 REMARK 620 4 HOH B 308 O 97.6 80.7 96.1 REMARK 620 5 HOH B 328 O 159.3 77.7 108.2 93.9 REMARK 620 6 HOH B 320 O 102.1 88.7 96.2 157.1 63.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1BV A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1BV B 202 DBREF 4I31 A 1 182 UNP P26662 POLG_HCVJA 1027 1207 DBREF 4I31 B 1 182 UNP P26662 POLG_HCVJA 1027 1207 DBREF 4I31 C 221 234 UNP P26662 POLG_HCVJA 1678 1691 DBREF 4I31 D 221 234 UNP P26662 POLG_HCVJA 1678 1691 SEQADV 4I31 MET A 0 UNP P26662 EXPRESSION TAG SEQADV 4I31 ILE A 114 UNP P26662 VAL 1140 CONFLICT SEQADV 4I31 VAL A 132 UNP P26662 ILE 1158 CONFLICT SEQADV 4I31 ALA A 181 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS A 183 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS A 184 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS A 185 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS A 186 UNP P26662 EXPRESSION TAG SEQADV 4I31 MET B 0 UNP P26662 EXPRESSION TAG SEQADV 4I31 ILE B 114 UNP P26662 VAL 1140 CONFLICT SEQADV 4I31 VAL B 132 UNP P26662 ILE 1158 CONFLICT SEQADV 4I31 ALA B 181 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS B 183 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS B 184 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS B 185 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS B 186 UNP P26662 EXPRESSION TAG SEQADV 4I31 LYS C 219 UNP P26662 INSERTION SEQADV 4I31 LYS C 220 UNP P26662 INSERTION SEQADV 4I31 LYS C 235 UNP P26662 INSERTION SEQADV 4I31 LYS D 219 UNP P26662 INSERTION SEQADV 4I31 LYS D 220 UNP P26662 INSERTION SEQADV 4I31 LYS D 235 UNP P26662 INSERTION SEQRES 1 A 187 MET ALA PRO ILE THR ALA TYR SER GLN GLN THR ARG GLY SEQRES 2 A 187 LEU LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP SEQRES 3 A 187 LYS ASN GLN VAL ASP GLY GLU VAL GLN VAL LEU SER THR SEQRES 4 A 187 ALA THR GLN SER PHE LEU ALA THR CYS VAL ASN GLY VAL SEQRES 5 A 187 CYS TRP THR VAL TYR HIS GLY ALA GLY SER LYS THR LEU SEQRES 6 A 187 ALA GLY PRO LYS GLY PRO ILE THR GLN MET TYR THR ASN SEQRES 7 A 187 VAL ASP GLN ASP LEU VAL GLY TRP PRO ALA PRO PRO GLY SEQRES 8 A 187 ALA ARG SER MET THR PRO CYS THR CYS GLY SER SER ASP SEQRES 9 A 187 LEU TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL SEQRES 10 A 187 ARG ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO SEQRES 11 A 187 ARG PRO VAL SER TYR LEU LYS GLY SER SER GLY GLY PRO SEQRES 12 A 187 LEU LEU CYS PRO SER GLY HIS VAL VAL GLY ILE PHE ARG SEQRES 13 A 187 ALA ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP SEQRES 14 A 187 PHE ILE PRO VAL GLU SER MET GLU THR THR MET ARG ALA SEQRES 15 A 187 SER LYS LYS LYS LYS SEQRES 1 B 187 MET ALA PRO ILE THR ALA TYR SER GLN GLN THR ARG GLY SEQRES 2 B 187 LEU LEU GLY CYS ILE ILE THR SER LEU THR GLY ARG ASP SEQRES 3 B 187 LYS ASN GLN VAL ASP GLY GLU VAL GLN VAL LEU SER THR SEQRES 4 B 187 ALA THR GLN SER PHE LEU ALA THR CYS VAL ASN GLY VAL SEQRES 5 B 187 CYS TRP THR VAL TYR HIS GLY ALA GLY SER LYS THR LEU SEQRES 6 B 187 ALA GLY PRO LYS GLY PRO ILE THR GLN MET TYR THR ASN SEQRES 7 B 187 VAL ASP GLN ASP LEU VAL GLY TRP PRO ALA PRO PRO GLY SEQRES 8 B 187 ALA ARG SER MET THR PRO CYS THR CYS GLY SER SER ASP SEQRES 9 B 187 LEU TYR LEU VAL THR ARG HIS ALA ASP VAL ILE PRO VAL SEQRES 10 B 187 ARG ARG ARG GLY ASP SER ARG GLY SER LEU LEU SER PRO SEQRES 11 B 187 ARG PRO VAL SER TYR LEU LYS GLY SER SER GLY GLY PRO SEQRES 12 B 187 LEU LEU CYS PRO SER GLY HIS VAL VAL GLY ILE PHE ARG SEQRES 13 B 187 ALA ALA VAL CYS THR ARG GLY VAL ALA LYS ALA VAL ASP SEQRES 14 B 187 PHE ILE PRO VAL GLU SER MET GLU THR THR MET ARG ALA SEQRES 15 B 187 SER LYS LYS LYS LYS SEQRES 1 C 17 LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SEQRES 2 C 17 SER GLY ARG LYS SEQRES 1 D 17 LYS LYS GLY SER VAL VAL ILE VAL GLY ARG ILE ILE LEU SEQRES 2 D 17 SER GLY ARG LYS HET NA A 201 1 HET 1BV A 202 58 HET NA B 201 1 HET 1BV B 202 58 HETNAM NA SODIUM ION HETNAM 1BV (2R,6S,7E,10E,13AR,14AR,16AS)-2-{[7-METHOXY-8-METHYL-2- HETNAM 2 1BV (PROPAN-2-YLOXY)QUINOLIN-4-YL]OXY}-N-[(1- HETNAM 3 1BV METHYLCYCLOPROPYL)SULFONYL]-6-{[(1-METHYL-1H-PYRAZOL- HETNAM 4 1BV 3-YL)CARBONYL]AMINO}-5,16-DIOXO-1,2,3,6,9,12,13,13A, HETNAM 5 1BV 14,15,16,16A-DODECAHYDROCYCLOPROPA[E]PYRROLO[1,2-A][1, HETNAM 6 1BV 4]DIAZACYCLOPENTADECINE-14A(5H)-CARBOXAMIDE FORMUL 5 NA 2(NA 1+) FORMUL 6 1BV 2(C41 H51 N7 O9 S) FORMUL 9 HOH *109(H2 O) HELIX 1 1 GLY A 12 GLY A 23 1 12 HELIX 2 2 TYR A 56 GLY A 60 1 5 HELIX 3 3 VAL A 132 LYS A 136 1 5 HELIX 4 4 VAL A 172 SER A 182 1 11 HELIX 5 5 GLY B 12 GLY B 23 1 12 HELIX 6 6 TYR B 56 GLY B 60 1 5 HELIX 7 7 VAL B 132 LYS B 136 1 5 HELIX 8 8 VAL B 172 ARG B 180 1 9 SHEET 1 A 7 ALA A 5 GLN A 9 0 SHEET 2 A 7 VAL C 224 LEU C 231 -1 O ILE C 230 N TYR A 6 SHEET 3 A 7 VAL A 33 SER A 37 -1 N VAL A 33 O ILE C 229 SHEET 4 A 7 SER A 42 VAL A 48 -1 O PHE A 43 N LEU A 36 SHEET 5 A 7 VAL A 51 VAL A 55 -1 O TRP A 53 N THR A 46 SHEET 6 A 7 LEU A 82 PRO A 86 -1 O TRP A 85 N CYS A 52 SHEET 7 A 7 TYR A 75 ASN A 77 -1 N ASN A 77 O LEU A 82 SHEET 1 B 7 ASP A 103 VAL A 107 0 SHEET 2 B 7 VAL A 113 ARG A 118 -1 O ILE A 114 N LEU A 106 SHEET 3 B 7 ARG A 123 PRO A 131 -1 O SER A 125 N ARG A 117 SHEET 4 B 7 VAL A 163 PRO A 171 -1 O ALA A 164 N ARG A 130 SHEET 5 B 7 VAL A 150 THR A 160 -1 N ALA A 156 O ASP A 168 SHEET 6 B 7 PRO A 142 LEU A 144 -1 N LEU A 143 O VAL A 151 SHEET 7 B 7 ASP A 103 VAL A 107 -1 N TYR A 105 O LEU A 144 SHEET 1 C 7 THR B 4 GLN B 9 0 SHEET 2 C 7 VAL D 224 SER D 232 -1 O ILE D 230 N TYR B 6 SHEET 3 C 7 VAL B 33 SER B 37 -1 N VAL B 35 O GLY D 227 SHEET 4 C 7 SER B 42 VAL B 48 -1 O PHE B 43 N LEU B 36 SHEET 5 C 7 VAL B 51 VAL B 55 -1 O TRP B 53 N THR B 46 SHEET 6 C 7 LEU B 82 PRO B 86 -1 O TRP B 85 N CYS B 52 SHEET 7 C 7 TYR B 75 ASN B 77 -1 N ASN B 77 O LEU B 82 SHEET 1 D 7 ASP B 103 VAL B 107 0 SHEET 2 D 7 VAL B 113 ARG B 118 -1 O VAL B 116 N LEU B 104 SHEET 3 D 7 ARG B 123 PRO B 131 -1 O SER B 125 N ARG B 117 SHEET 4 D 7 VAL B 163 PRO B 171 -1 O VAL B 167 N GLY B 124 SHEET 5 D 7 VAL B 150 THR B 160 -1 N ALA B 156 O ASP B 168 SHEET 6 D 7 PRO B 142 LEU B 144 -1 N LEU B 143 O VAL B 151 SHEET 7 D 7 ASP B 103 VAL B 107 -1 N TYR B 105 O LEU B 144 SSBOND 1 CYS A 47 CYS A 52 1555 1555 2.06 SSBOND 2 CYS A 97 CYS A 145 1555 1555 2.03 SSBOND 3 CYS B 47 CYS B 52 1555 1555 2.05 LINK O ALA A 111 NA NA A 201 1555 1555 2.57 LINK O ALA B 111 NA NA B 201 1555 1555 2.60 LINK O ALA B 5 NA NA B 201 1555 1555 2.60 LINK O ALA A 5 NA NA A 201 1555 1555 2.63 LINK NA NA B 201 O HOH B 331 1555 1555 2.71 LINK NA NA A 201 O HOH A 306 1555 1555 2.71 LINK NA NA B 201 O HOH B 308 1555 1555 2.73 LINK NA NA B 201 O HOH B 328 1555 1555 2.77 LINK NA NA B 201 O HOH B 320 1555 1555 2.81 LINK NA NA A 201 O HOH A 325 1555 1555 2.84 LINK NA NA A 201 O HOH A 327 1555 1555 2.88 LINK NA NA A 201 O HOH A 340 1555 1555 2.90 CISPEP 1 ALA A 1 PRO A 2 0 -11.66 CISPEP 2 ALA B 1 PRO B 2 0 -5.18 SITE 1 AC1 6 ALA A 5 ALA A 111 HOH A 306 HOH A 325 SITE 2 AC1 6 HOH A 327 HOH A 340 SITE 1 AC2 22 GLN A 41 SER A 42 PHE A 43 TYR A 56 SITE 2 AC2 22 HIS A 57 GLY A 58 VAL A 78 ASP A 79 SITE 3 AC2 22 ASP A 81 ARG A 123 VAL A 132 LEU A 135 SITE 4 AC2 22 LYS A 136 GLY A 137 SER A 138 SER A 139 SITE 5 AC2 22 PHE A 154 ARG A 155 ALA A 156 ALA A 157 SITE 6 AC2 22 HOH A 342 HOH A 348 SITE 1 AC3 6 ALA B 5 ALA B 111 HOH B 308 HOH B 320 SITE 2 AC3 6 HOH B 328 HOH B 331 SITE 1 AC4 23 GLN B 41 SER B 42 PHE B 43 TYR B 56 SITE 2 AC4 23 HIS B 57 GLY B 58 VAL B 78 ASP B 79 SITE 3 AC4 23 ASP B 81 ARG B 123 VAL B 132 LEU B 135 SITE 4 AC4 23 LYS B 136 GLY B 137 SER B 138 SER B 139 SITE 5 AC4 23 PHE B 154 ARG B 155 ALA B 156 ALA B 157 SITE 6 AC4 23 ASP B 168 HOH B 326 HOH B 349 CRYST1 94.243 94.243 82.075 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010611 0.006126 0.000000 0.00000 SCALE2 0.000000 0.012252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012184 0.00000 MASTER 334 0 4 8 28 0 16 6 0 0 0 34 END