HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-NOV-12 4HYZ TITLE CRYSTAL STRUCTURE OF A DUF3887 FAMILY PROTEIN (RUMGNA_01855) FROM TITLE 2 RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.25 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 36-148; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS; SOURCE 3 ORGANISM_TAXID: 411470; SOURCE 4 ATCC: 29149; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PF13026 FAMILY PROTEIN, DUF3887, STRUCTURAL GENOMICS, JOINT CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 15-NOV-17 4HYZ 1 REMARK REVDAT 2 24-DEC-14 4HYZ 1 TITLE REVDAT 1 09-JAN-13 4HYZ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (RUMGNA_01855) JRNL TITL 2 FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.25 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2909 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1992 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2757 REMARK 3 BIN R VALUE (WORKING SET) : 0.1977 REMARK 3 BIN FREE R VALUE : 0.2277 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.23 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 152 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1822 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.61800 REMARK 3 B22 (A**2) : -1.61800 REMARK 3 B33 (A**2) : 3.23600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.315 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1935 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 2593 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 914 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 59 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 265 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1935 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 239 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2198 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.80 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 0 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1434 -30.5441 136.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.0107 T22: -0.0947 REMARK 3 T33: -0.1027 T12: 0.0088 REMARK 3 T13: 0.0560 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.9009 L22: 3.5409 REMARK 3 L33: 3.8883 L12: -1.2283 REMARK 3 L13: -1.5242 L23: 2.2114 REMARK 3 S TENSOR REMARK 3 S11: -0.1701 S12: -0.0365 S13: -0.1488 REMARK 3 S21: 0.3365 S22: 0.0488 S23: -0.2847 REMARK 3 S31: 0.5794 S32: 0.2149 S33: 0.1213 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 0 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 21.6714 -19.1341 138.9340 REMARK 3 T TENSOR REMARK 3 T11: -0.0363 T22: -0.1575 REMARK 3 T33: 0.0272 T12: 0.0244 REMARK 3 T13: -0.1281 T23: -0.1188 REMARK 3 L TENSOR REMARK 3 L11: 2.8011 L22: 2.7052 REMARK 3 L33: 4.7257 L12: -0.2438 REMARK 3 L13: 1.6201 L23: 0.9042 REMARK 3 S TENSOR REMARK 3 S11: -0.1918 S12: -0.1888 S13: 0.3194 REMARK 3 S21: -0.1948 S22: -0.2601 S23: 0.3419 REMARK 3 S31: -0.6217 S32: -0.3797 S33: 0.4520 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4.SULFATE (SO4) FROM THE CRYSTALLIZATION, REMARK 3 GLYCEROL(GOL), USED AS A CRYOPROTECTANT, AND CHLORIDE FROM THE REMARK 3 PURIFICATION BUFFER HAVE BEEN MODELED INTO THE STRUCTURE. 5. 4. REMARK 3 NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR RESTRAINT REMARK 3 REPRESENTATION (-AUTONCS). 5.UNEXPLAINED DIFFERENCE DENSITY NEAR REMARK 3 TYR 118 ON THE A AND B SUBUNITS WAS NOT MODELED. REMARK 4 REMARK 4 4HYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000076095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97871,0.97922,0.91837 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16696 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 29.377 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87300 REMARK 200 R SYM FOR SHELL (I) : 0.87300 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.40M AMMONIUM SULFATE, 0.1M CITRIC REMARK 280 ACID PH 4.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.22000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.61000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 126.91500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.30500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 211.52500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 169.22000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 84.61000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.30500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 126.91500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 211.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -311.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 296.13500 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 LYS A 92 CD CE NZ REMARK 470 LYS A 101 CE NZ REMARK 470 LYS A 105 CE NZ REMARK 470 LYS A 116 CE NZ REMARK 470 GLU A 128 CD OE1 OE2 REMARK 470 GLU B 44 CD OE1 OE2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LYS B 92 CE NZ REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 101 CD CE NZ REMARK 470 LYS B 113 CE NZ REMARK 470 LYS B 116 CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 40 32.17 -98.31 REMARK 500 LYS B 40 34.14 -97.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 212 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417405 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 37-149) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4HYZ A 37 149 UNP A7B2S7 A7B2S7_RUMGN 37 149 DBREF 4HYZ B 37 149 UNP A7B2S7 A7B2S7_RUMGN 37 149 SEQADV 4HYZ GLY A 0 UNP A7B2S7 LEADER SEQUENCE SEQADV 4HYZ GLY B 0 UNP A7B2S7 LEADER SEQUENCE SEQRES 1 A 114 GLY GLU ILE LEU LYS GLU LEU PRO GLU GLY PHE ASP LYS SEQRES 2 A 114 GLU THR VAL ARG LYS GLN ALA MSE GLU ASP ILE GLU ILE SEQRES 3 A 114 ALA GLN SER LYS ASP TYR GLU SER TRP LYS SER ARG PHE SEQRES 4 A 114 THR LYS ASP LEU GLN SER SER LEU THR GLU GLU SER TYR SEQRES 5 A 114 ASP SER TYR LEU LYS ILE LEU GLU LYS GLN GLY GLU PHE SEQRES 6 A 114 LYS GLU PHE GLY LYS CYS THR TYR LEU GLY GLN ILE LYS SEQRES 7 A 114 ASP ASN LYS LYS TYR GLY GLY VAL ILE ILE VAL VAL LYS SEQRES 8 A 114 TYR GLU GLU GLY ASN VAL ASN TYR SER LEU ALA TYR ASP SEQRES 9 A 114 GLU ASP MSE ASN LEU VAL SER PHE THR MSE SEQRES 1 B 114 GLY GLU ILE LEU LYS GLU LEU PRO GLU GLY PHE ASP LYS SEQRES 2 B 114 GLU THR VAL ARG LYS GLN ALA MSE GLU ASP ILE GLU ILE SEQRES 3 B 114 ALA GLN SER LYS ASP TYR GLU SER TRP LYS SER ARG PHE SEQRES 4 B 114 THR LYS ASP LEU GLN SER SER LEU THR GLU GLU SER TYR SEQRES 5 B 114 ASP SER TYR LEU LYS ILE LEU GLU LYS GLN GLY GLU PHE SEQRES 6 B 114 LYS GLU PHE GLY LYS CYS THR TYR LEU GLY GLN ILE LYS SEQRES 7 B 114 ASP ASN LYS LYS TYR GLY GLY VAL ILE ILE VAL VAL LYS SEQRES 8 B 114 TYR GLU GLU GLY ASN VAL ASN TYR SER LEU ALA TYR ASP SEQRES 9 B 114 GLU ASP MSE ASN LEU VAL SER PHE THR MSE MODRES 4HYZ MSE A 56 MET SELENOMETHIONINE MODRES 4HYZ MSE A 142 MET SELENOMETHIONINE MODRES 4HYZ MSE A 149 MET SELENOMETHIONINE MODRES 4HYZ MSE B 56 MET SELENOMETHIONINE MODRES 4HYZ MSE B 142 MET SELENOMETHIONINE MODRES 4HYZ MSE B 149 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 142 8 HET MSE A 149 9 HET MSE B 56 8 HET MSE B 142 8 HET MSE B 149 9 HET SO4 A 201 5 HET SO4 A 202 5 HET CL A 203 1 HET CL A 204 1 HET GOL A 205 6 HET GOL A 206 6 HET GOL A 207 6 HET GOL A 208 6 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET CL B 205 1 HET CL B 206 1 HET CL B 207 1 HET CL B 208 1 HET GOL B 209 6 HET GOL B 210 6 HET GOL B 211 6 HET GOL B 212 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 SO4 6(O4 S 2-) FORMUL 5 CL 6(CL 1-) FORMUL 7 GOL 8(C3 H8 O3) FORMUL 23 HOH *107(H2 O) HELIX 1 1 ASP A 47 SER A 64 1 18 HELIX 2 2 ASP A 66 SER A 72 1 7 HELIX 3 3 THR A 75 SER A 80 1 6 HELIX 4 4 THR A 83 LYS A 96 1 14 HELIX 5 5 ASP B 47 SER B 64 1 18 HELIX 6 6 ASP B 66 SER B 72 1 7 HELIX 7 7 THR B 75 SER B 80 1 6 HELIX 8 8 THR B 83 LYS B 96 1 14 SHEET 1 A 5 GLU A 37 LEU A 39 0 SHEET 2 A 5 PHE A 100 LYS A 113 -1 O GLY A 110 N LEU A 39 SHEET 3 A 5 LYS A 116 TYR A 127 -1 O LYS A 126 N GLU A 102 SHEET 4 A 5 GLY A 130 TYR A 138 -1 O VAL A 132 N VAL A 125 SHEET 5 A 5 LEU A 144 THR A 148 -1 O THR A 148 N SER A 135 SHEET 1 B 5 GLU B 37 LEU B 39 0 SHEET 2 B 5 PHE B 100 LYS B 113 -1 O GLY B 110 N LEU B 39 SHEET 3 B 5 LYS B 116 TYR B 127 -1 O VAL B 124 N GLY B 104 SHEET 4 B 5 GLY B 130 TYR B 138 -1 O VAL B 132 N VAL B 125 SHEET 5 B 5 LEU B 144 THR B 148 -1 O THR B 148 N SER B 135 LINK C ALA A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N GLU A 57 1555 1555 1.34 LINK C ASP A 141 N MSE A 142 1555 1555 1.35 LINK C MSE A 142 N ASN A 143 1555 1555 1.34 LINK C THR A 148 N MSE A 149 1555 1555 1.32 LINK C ALA B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N GLU B 57 1555 1555 1.34 LINK C ASP B 141 N MSE B 142 1555 1555 1.34 LINK C MSE B 142 N ASN B 143 1555 1555 1.35 LINK C THR B 148 N MSE B 149 1555 1555 1.32 SITE 1 AC1 7 GLY A 0 LYS A 113 ASP A 114 ASN A 131 SITE 2 AC1 7 HOH A 322 HOH A 323 HOH A 363 SITE 1 AC2 6 THR A 75 LYS A 76 ASP A 139 ASP A 141 SITE 2 AC2 6 ASN A 143 HOH A 361 SITE 1 AC3 1 GLY A 45 SITE 1 AC4 2 LYS A 48 HOH A 329 SITE 1 AC5 4 LYS A 116 LYS A 117 GLU A 140 HOH A 316 SITE 1 AC6 4 GLU A 57 GLU A 60 ILE B 61 HOH B 308 SITE 1 AC7 4 ARG A 52 CYS A 106 TYR A 108 CL B 206 SITE 1 AC8 4 LEU A 82 THR A 83 GLU A 84 LYS B 76 SITE 1 AC9 5 LYS A 40 LYS A 48 LYS B 40 LYS B 48 SITE 2 AC9 5 HOH B 311 SITE 1 BC1 6 GLY B 0 LYS B 113 ASP B 114 ASN B 131 SITE 2 BC1 6 HOH B 316 HOH B 324 SITE 1 BC2 5 LYS A 48 ARG B 52 CYS B 106 TYR B 108 SITE 2 BC2 5 HOH B 322 SITE 1 BC3 5 THR B 75 LYS B 76 ASP B 139 ASP B 141 SITE 2 BC3 5 ASN B 143 SITE 1 BC4 1 GLY B 45 SITE 1 BC5 2 GOL A 207 LYS B 48 SITE 1 BC6 3 GLU B 84 GLU B 85 HOH B 314 SITE 1 BC7 1 ASN B 133 SITE 1 BC8 3 GLN B 111 GLY B 120 HOH B 329 SITE 1 BC9 3 LYS B 117 GLU B 140 HOH B 317 SITE 1 CC1 1 GLN B 97 SITE 1 CC2 7 LYS A 53 GLU A 57 GLN B 54 ARG B 73 SITE 2 CC2 7 ASP B 141 ASN B 143 HOH B 330 CRYST1 66.290 66.290 253.830 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015085 0.008709 0.000000 0.00000 SCALE2 0.000000 0.017419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003940 0.00000 MASTER 428 0 26 8 10 0 27 6 0 0 0 18 END