HEADER TRANSCRIPTION/DNA 28-OCT-12 4HRI TITLE CRYSTAL STRUCTURE OF HETR IN COMPLEX WITH A 21-BP PALINDROMIC DNA AT TITLE 2 THE UPSTREAM OF THE HETP PROMOTER FROM ANABAENA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROCYST DIFFERENTIATION CONTROL PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: HETR; COMPND 5 EC: 3.4.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*GP*CP*GP*AP*GP*GP*GP*GP*TP*CP*TP*AP*AP*CP*CP*CP*CP*TP*CP*AP*T)- COMPND 10 3'); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(P*AP*TP*GP*AP*GP*GP*GP*GP*TP*TP*AP*GP*AP*CP*CP*CP*CP*TP*CP*GP*C)- COMPND 16 3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 3 ORGANISM_COMMON: ANABAENA; SOURCE 4 ORGANISM_TAXID: 103690; SOURCE 5 STRAIN: PCC 7120; SOURCE 6 GENE: HETR; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC 7120; SOURCE 15 ORGANISM_COMMON: ANABAENA SP. PCC 7120; SOURCE 16 ORGANISM_TAXID: 103690; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC 7120; SOURCE 20 ORGANISM_COMMON: ANABAENA SP. PCC 7120; SOURCE 21 ORGANISM_TAXID: 103690 KEYWDS CYANOBACTERIA, TRANSCRIPTIONAL FACTOR, HETEROCYST DIFFERENTIATION, KEYWDS 2 HELIX-TURN-HELIX DNA-BINDING MOTIF, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.X.HU,Y.L.JIANG,M.X.ZHAO,Y.CHEN,C.C.ZHANG,C.Z.ZHOU REVDAT 1 17-APR-13 4HRI 0 JRNL AUTH H.X.HU,Y.L.JIANG,M.X.ZHAO,P.F.ZHU,X.Y.YANG,B.WEN,Z.ZHANG, JRNL AUTH 2 Q.WU,Y.CHEN,C.C.ZHANG,C.Z.ZHOU JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF ANABAENA HETR REVEAL JRNL TITL 2 INSIGHTS INTO ITS BINDING TO DNA TARGETS AND THE INHIBITORY JRNL TITL 3 HEXAPEPTIDE ERGSGR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.307 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0860 - 5.8992 0.95 2639 125 0.2700 0.3447 REMARK 3 2 5.8992 - 4.6863 0.99 2592 114 0.2090 0.2517 REMARK 3 3 4.6863 - 4.0950 0.99 2543 148 0.1808 0.2568 REMARK 3 4 4.0950 - 3.7211 0.99 2549 123 0.1989 0.2755 REMARK 3 5 3.7211 - 3.4547 1.00 2510 139 0.1933 0.3275 REMARK 3 6 3.4547 - 3.2511 1.00 2532 136 0.2132 0.3346 REMARK 3 7 3.2511 - 3.0884 1.00 2465 172 0.2812 0.3492 REMARK 3 8 3.0884 - 2.9541 0.99 2496 141 0.3969 0.4603 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 84.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.020 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 104.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 93.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 16.11050 REMARK 3 B22 (A**2) : 16.11050 REMARK 3 B33 (A**2) : -2.95520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5625 REMARK 3 ANGLE : 1.563 7766 REMARK 3 CHIRALITY : 0.088 838 REMARK 3 PLANARITY : 0.008 847 REMARK 3 DIHEDRAL : 21.883 2212 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -37.6458 3.9962 -8.9900 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.3375 REMARK 3 T33: 0.1800 T12: 0.0372 REMARK 3 T13: 0.0336 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.2317 L22: 2.0712 REMARK 3 L33: 2.8289 L12: -0.0747 REMARK 3 L13: -1.0676 L23: 1.3911 REMARK 3 S TENSOR REMARK 3 S11: -0.1074 S12: -0.0901 S13: 0.0543 REMARK 3 S21: -0.0311 S22: 0.0762 S23: -0.3767 REMARK 3 S31: 0.3930 S32: 0.1041 S33: -0.0255 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 4:88 OR RESSEQ 90:96 REMARK 3 OR RESSEQ 222:256 OR RESSEQ 259:269 OR REMARK 3 RESSEQ 271:281 OR RESSEQ 287:297 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 4:88 OR RESSEQ 90:96 REMARK 3 OR RESSEQ 222:256 OR RESSEQ 259:269 OR REMARK 3 RESSEQ 271:281 OR RESSEQ 287:297 ) REMARK 3 ATOM PAIRS NUMBER : 1310 REMARK 3 RMSD : 0.106 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HRI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB075829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.14400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 44.94150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 44.94150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.57200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 44.94150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 44.94150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 181.71600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 44.94150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.94150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.57200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 44.94150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.94150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 181.71600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 121.14400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -175.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 119 REMARK 465 ARG B 120 REMARK 465 SER B 121 REMARK 465 ARG B 122 REMARK 465 ILE B 123 REMARK 465 PHE B 214 REMARK 465 TYR B 215 REMARK 465 ALA B 216 REMARK 465 PRO B 217 REMARK 465 ALA B 218 REMARK 465 ASP B 219 REMARK 465 ASP B 220 REMARK 465 GLN B 221 REMARK 465 GLY B 284 REMARK 465 GLY B 285 REMARK 465 GLU B 298 REMARK 465 ASP B 299 REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 TRP A 116 REMARK 465 ILE A 117 REMARK 465 PRO A 118 REMARK 465 GLY A 119 REMARK 465 ARG A 120 REMARK 465 SER A 121 REMARK 465 ARG A 122 REMARK 465 ILE A 123 REMARK 465 PRO A 124 REMARK 465 GLY A 125 REMARK 465 THR A 126 REMARK 465 SER A 127 REMARK 465 LEU A 128 REMARK 465 THR A 129 REMARK 465 ALA A 216 REMARK 465 PRO A 217 REMARK 465 ALA A 218 REMARK 465 ASP A 219 REMARK 465 ASP A 220 REMARK 465 GLN A 221 REMARK 465 GLY A 284 REMARK 465 GLY A 285 REMARK 465 ILE A 286 REMARK 465 ASP A 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 101 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 263 CG OD1 OD2 REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 DT C 9 C7 REMARK 470 DT C 11 C7 REMARK 470 DT C 18 C7 REMARK 470 DT C 21 C7 REMARK 470 DT D 2 C7 REMARK 470 DT D 18 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 10 O LEU A 86 1.99 REMARK 500 NE2 GLN B 135 O HOH B 302 2.00 REMARK 500 O ASN B 3 N ILE B 5 2.02 REMARK 500 O GLY A 194 N VAL A 196 2.02 REMARK 500 NH1 ARG A 62 N7 DG D 3 2.02 REMARK 500 O LEU B 95 N SER B 97 2.06 REMARK 500 N ASN B 3 OD2 ASP B 6 2.09 REMARK 500 OE2 GLU A 243 NH1 ARG A 245 2.13 REMARK 500 O THR B 126 NH1 ARG B 134 2.13 REMARK 500 O LEU B 86 NH2 ARG A 10 2.13 REMARK 500 O4 DT C 11 N6 DA D 11 2.14 REMARK 500 O TYR B 108 OH TYR B 208 2.15 REMARK 500 OP2 DC D 14 O HOH D 201 2.16 REMARK 500 NE2 HIS B 33 O GLU B 99 2.17 REMARK 500 O2 DC C 17 N2 DG D 5 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 10 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 10 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 10 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 34 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 34 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 62 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 62 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU B 70 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG B 83 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 83 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 245 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 245 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 62 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 LEU A 70 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 PRO A 259 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 PRO A 259 C - N - CD ANGL. DEV. = -15.9 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG C 5 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG C 5 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DG C 8 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DT C 11 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 11 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA C 12 C3' - C2' - C1' ANGL. DEV. = -7.9 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC C 14 O4' - C4' - C3' ANGL. DEV. = -3.0 DEGREES REMARK 500 DC C 15 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC C 16 O4' - C4' - C3' ANGL. DEV. = -4.5 DEGREES REMARK 500 DC C 19 C3' - C2' - C1' ANGL. DEV. = -6.8 DEGREES REMARK 500 DT C 21 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG D 5 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 9 O5' - C5' - C4' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT D 9 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT D 10 N3 - C4 - O4 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 71 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 4 -36.89 23.74 REMARK 500 THR B 30 -87.46 -71.51 REMARK 500 GLN B 57 40.30 -79.43 REMARK 500 GLN B 59 34.81 72.42 REMARK 500 HIS B 69 69.15 65.45 REMARK 500 GLU B 88 52.39 -174.17 REMARK 500 LYS B 90 72.64 -18.12 REMARK 500 GLN B 98 -136.66 -70.32 REMARK 500 TYR B 108 9.87 83.66 REMARK 500 GLN B 113 70.34 96.56 REMARK 500 TYR B 114 156.03 111.24 REMARK 500 PRO B 115 121.13 10.61 REMARK 500 TRP B 116 -51.53 -147.58 REMARK 500 ILE B 117 124.86 50.39 REMARK 500 THR B 126 -132.16 -163.10 REMARK 500 THR B 129 -178.41 57.56 REMARK 500 ARG B 134 4.20 -47.68 REMARK 500 ILE B 136 -32.87 155.91 REMARK 500 LEU B 140 134.36 -177.05 REMARK 500 SER B 142 146.84 86.56 REMARK 500 LEU B 149 128.12 -31.78 REMARK 500 LYS B 164 -73.26 -48.61 REMARK 500 ARG B 165 -25.72 -34.10 REMARK 500 GLU B 168 -25.40 -27.00 REMARK 500 ARG B 175 -141.23 -112.46 REMARK 500 SER B 201 -170.32 -171.44 REMARK 500 PRO B 202 33.08 -59.86 REMARK 500 TRP B 203 -165.71 163.61 REMARK 500 PHE B 207 126.23 169.55 REMARK 500 TYR B 208 -149.71 84.35 REMARK 500 ALA B 209 -144.48 115.73 REMARK 500 LEU B 210 147.42 -11.76 REMARK 500 GLU B 243 38.40 -78.18 REMARK 500 LYS B 244 24.55 42.20 REMARK 500 HIS B 281 -138.81 -176.05 REMARK 500 GLN B 282 38.92 86.83 REMARK 500 ARG B 296 -146.59 -76.16 REMARK 500 THR A 30 -82.92 -70.82 REMARK 500 GLN A 57 38.93 -78.40 REMARK 500 HIS A 69 64.60 69.23 REMARK 500 GLU A 88 50.68 -175.40 REMARK 500 LYS A 90 76.59 -46.44 REMARK 500 LEU A 103 -54.06 114.95 REMARK 500 ILE A 104 42.42 -77.91 REMARK 500 GLN A 105 6.71 -62.63 REMARK 500 GLU A 131 -112.44 -125.07 REMARK 500 LYS A 139 -128.97 -152.50 REMARK 500 SER A 142 -154.96 -68.74 REMARK 500 ASP A 146 85.40 -55.32 REMARK 500 SER A 166 -32.88 -35.63 REMARK 500 REMARK 500 THIS ENTRY HAS 69 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 96 SER B 97 146.13 REMARK 500 TYR B 108 VAL B 109 140.51 REMARK 500 GLN B 113 TYR B 114 -149.06 REMARK 500 PRO B 206 PHE B 207 129.01 REMARK 500 PHE B 207 TYR B 208 149.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 PHE B 207 21.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3QOD RELATED DB: PDB REMARK 900 RELATED ID: 3QOE RELATED DB: PDB DBREF 4HRI B 1 299 UNP P27709 HETR_NOSS1 1 299 DBREF 4HRI A 1 299 UNP P27709 HETR_NOSS1 1 299 DBREF 4HRI C 1 21 PDB 4HRI 4HRI 1 21 DBREF 4HRI D 1 21 PDB 4HRI 4HRI 1 21 SEQADV 4HRI MET B -7 UNP P27709 EXPRESSION TAG SEQADV 4HRI GLY B -6 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS B -5 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS B -4 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS B -3 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS B -2 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS B -1 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS B 0 UNP P27709 EXPRESSION TAG SEQADV 4HRI MET A -7 UNP P27709 EXPRESSION TAG SEQADV 4HRI GLY A -6 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS A -5 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS A -4 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS A -3 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS A -2 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS A -1 UNP P27709 EXPRESSION TAG SEQADV 4HRI HIS A 0 UNP P27709 EXPRESSION TAG SEQRES 1 B 307 MET GLY HIS HIS HIS HIS HIS HIS MET SER ASN ASP ILE SEQRES 2 B 307 ASP LEU ILE LYS ARG LEU GLY PRO SER ALA MET ASP GLN SEQRES 3 B 307 ILE MET LEU TYR LEU ALA PHE SER ALA MET ARG THR SER SEQRES 4 B 307 GLY HIS ARG HIS GLY ALA PHE LEU ASP ALA ALA ALA THR SEQRES 5 B 307 ALA ALA LYS CYS ALA ILE TYR MET THR TYR LEU GLU GLN SEQRES 6 B 307 GLY GLN ASN LEU ARG MET THR GLY HIS LEU HIS HIS LEU SEQRES 7 B 307 GLU PRO LYS ARG VAL LYS ILE ILE VAL GLU GLU VAL ARG SEQRES 8 B 307 GLN ALA LEU MET GLU GLY LYS LEU LEU LYS THR LEU GLY SEQRES 9 B 307 SER GLN GLU PRO ARG TYR LEU ILE GLN PHE PRO TYR VAL SEQRES 10 B 307 TRP MET GLU GLN TYR PRO TRP ILE PRO GLY ARG SER ARG SEQRES 11 B 307 ILE PRO GLY THR SER LEU THR SER GLU GLU LYS ARG GLN SEQRES 12 B 307 ILE GLU HIS LYS LEU PRO SER ASN LEU PRO ASP ALA GLN SEQRES 13 B 307 LEU VAL THR SER PHE GLU PHE LEU GLU LEU ILE GLU PHE SEQRES 14 B 307 LEU HIS LYS ARG SER GLN GLU ASP LEU PRO PRO GLU HIS SEQRES 15 B 307 ARG MET GLU LEU SER GLU ALA LEU ALA GLU HIS ILE LYS SEQRES 16 B 307 ARG ARG LEU LEU TYR SER GLY THR VAL THR ARG ILE ASP SEQRES 17 B 307 SER PRO TRP GLY MET PRO PHE TYR ALA LEU THR ARG PRO SEQRES 18 B 307 PHE TYR ALA PRO ALA ASP ASP GLN GLU ARG THR TYR ILE SEQRES 19 B 307 MET VAL GLU ASP THR ALA ARG TYR PHE ARG MET MET LYS SEQRES 20 B 307 ASP TRP ALA GLU LYS ARG PRO ASN ALA MET ARG ALA LEU SEQRES 21 B 307 GLU GLU LEU ASP VAL PRO PRO GLU ARG TRP ASP GLU ALA SEQRES 22 B 307 MET GLN GLU LEU ASP GLU ILE ILE ARG THR TRP ALA ASP SEQRES 23 B 307 LYS TYR HIS GLN VAL GLY GLY ILE PRO MET ILE LEU GLN SEQRES 24 B 307 MET VAL PHE GLY ARG LYS GLU ASP SEQRES 1 A 307 MET GLY HIS HIS HIS HIS HIS HIS MET SER ASN ASP ILE SEQRES 2 A 307 ASP LEU ILE LYS ARG LEU GLY PRO SER ALA MET ASP GLN SEQRES 3 A 307 ILE MET LEU TYR LEU ALA PHE SER ALA MET ARG THR SER SEQRES 4 A 307 GLY HIS ARG HIS GLY ALA PHE LEU ASP ALA ALA ALA THR SEQRES 5 A 307 ALA ALA LYS CYS ALA ILE TYR MET THR TYR LEU GLU GLN SEQRES 6 A 307 GLY GLN ASN LEU ARG MET THR GLY HIS LEU HIS HIS LEU SEQRES 7 A 307 GLU PRO LYS ARG VAL LYS ILE ILE VAL GLU GLU VAL ARG SEQRES 8 A 307 GLN ALA LEU MET GLU GLY LYS LEU LEU LYS THR LEU GLY SEQRES 9 A 307 SER GLN GLU PRO ARG TYR LEU ILE GLN PHE PRO TYR VAL SEQRES 10 A 307 TRP MET GLU GLN TYR PRO TRP ILE PRO GLY ARG SER ARG SEQRES 11 A 307 ILE PRO GLY THR SER LEU THR SER GLU GLU LYS ARG GLN SEQRES 12 A 307 ILE GLU HIS LYS LEU PRO SER ASN LEU PRO ASP ALA GLN SEQRES 13 A 307 LEU VAL THR SER PHE GLU PHE LEU GLU LEU ILE GLU PHE SEQRES 14 A 307 LEU HIS LYS ARG SER GLN GLU ASP LEU PRO PRO GLU HIS SEQRES 15 A 307 ARG MET GLU LEU SER GLU ALA LEU ALA GLU HIS ILE LYS SEQRES 16 A 307 ARG ARG LEU LEU TYR SER GLY THR VAL THR ARG ILE ASP SEQRES 17 A 307 SER PRO TRP GLY MET PRO PHE TYR ALA LEU THR ARG PRO SEQRES 18 A 307 PHE TYR ALA PRO ALA ASP ASP GLN GLU ARG THR TYR ILE SEQRES 19 A 307 MET VAL GLU ASP THR ALA ARG TYR PHE ARG MET MET LYS SEQRES 20 A 307 ASP TRP ALA GLU LYS ARG PRO ASN ALA MET ARG ALA LEU SEQRES 21 A 307 GLU GLU LEU ASP VAL PRO PRO GLU ARG TRP ASP GLU ALA SEQRES 22 A 307 MET GLN GLU LEU ASP GLU ILE ILE ARG THR TRP ALA ASP SEQRES 23 A 307 LYS TYR HIS GLN VAL GLY GLY ILE PRO MET ILE LEU GLN SEQRES 24 A 307 MET VAL PHE GLY ARG LYS GLU ASP SEQRES 1 C 21 DG DC DG DA DG DG DG DG DT DC DT DA DA SEQRES 2 C 21 DC DC DC DC DT DC DA DT SEQRES 1 D 21 DA DT DG DA DG DG DG DG DT DT DA DG DA SEQRES 2 D 21 DC DC DC DC DT DC DG DC HET CA C 101 1 HET CA C 102 1 HET CA D 101 1 HETNAM CA CALCIUM ION FORMUL 5 CA 3(CA 2+) FORMUL 8 HOH *6(H2 O) HELIX 1 1 ILE B 5 GLY B 12 1 8 HELIX 2 2 SER B 14 ARG B 29 1 16 HELIX 3 3 ARG B 34 GLN B 57 1 24 HELIX 4 4 ASN B 60 HIS B 69 1 10 HELIX 5 5 GLU B 71 GLY B 89 1 19 HELIX 6 6 ARG B 101 PHE B 106 1 6 HELIX 7 7 THR B 151 GLU B 168 1 18 HELIX 8 8 PRO B 171 ARG B 175 5 5 HELIX 9 9 SER B 179 GLY B 194 1 16 HELIX 10 10 ARG B 223 GLU B 243 1 21 HELIX 11 11 ARG B 261 TYR B 280 1 20 HELIX 12 12 ILE A 5 GLY A 12 1 8 HELIX 13 13 SER A 14 ARG A 29 1 16 HELIX 14 14 ARG A 34 GLN A 57 1 24 HELIX 15 15 ASN A 60 HIS A 69 1 10 HELIX 16 16 GLU A 71 GLY A 89 1 19 HELIX 17 17 GLN A 105 GLU A 112 1 8 HELIX 18 18 SER A 152 ASP A 169 1 18 HELIX 19 19 SER A 179 LEU A 191 1 13 HELIX 20 20 ARG A 223 GLU A 243 1 21 HELIX 21 21 ARG A 261 TYR A 280 1 20 SHEET 1 A 4 MET B 249 LEU B 255 0 SHEET 2 A 4 MET A 288 GLY A 295 -1 O PHE A 294 N MET B 249 SHEET 3 A 4 PRO B 287 GLY B 295 -1 N VAL B 293 O GLN A 291 SHEET 4 A 4 MET A 249 ASP A 256 -1 O MET A 249 N PHE B 294 SHEET 1 B 3 VAL A 150 THR A 151 0 SHEET 2 B 3 PHE A 207 LEU A 210 -1 O TYR A 208 N VAL A 150 SHEET 3 B 3 THR A 197 ASP A 200 -1 N ASP A 200 O PHE A 207 CISPEP 1 GLY B 204 MET B 205 0 -7.72 CISPEP 2 GLN A 98 GLU A 99 0 -17.50 CISPEP 3 LYS A 133 ARG A 134 0 2.92 SITE 1 AC1 1 DT C 11 CRYST1 89.883 89.883 242.288 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004127 0.00000 MASTER 532 0 3 21 7 0 1 6 0 0 0 52 END