HEADER DNA BINDING PROTEIN/DNA 23-OCT-12 4HP3 TITLE CRYSTAL STRUCTURE OF TET3 IN COMPLEX WITH A CPG DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LOC100036628 PROTEIN; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: XENOPUS (SILURANA) TROPICALIS; SOURCE 5 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 6 ORGANISM_TAXID: 8364; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS CXXC, DNA METHYLATION, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.CHAO,W.TEMPEL,C.BIAN,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 19-DEC-12 4HP3 1 JRNL REVDAT 1 05-DEC-12 4HP3 0 JRNL AUTH Y.XU,C.XU,A.KATO,W.TEMPEL,J.G.ABREU,C.BIAN,Y.HU,D.HU,B.ZHAO, JRNL AUTH 2 T.CEROVINA,J.DIAO,F.WU,H.H.HE,Q.CUI,E.CLARK,C.MA,A.BARBARA, JRNL AUTH 3 G.J.VEENSTRA,G.XU,U.B.KAISER,X.S.LIU,S.P.SUGRUE,X.HE,J.MIN, JRNL AUTH 4 Y.KATO,Y.G.SHI JRNL TITL TET3 CXXC DOMAIN AND DIOXYGENASE ACTIVITY COOPERATIVELY JRNL TITL 2 REGULATE KEY GENES FOR XENOPUS EYE AND NEURAL DEVELOPMENT. JRNL REF CELL(CAMBRIDGE,MASS.) V. 151 1200 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 23217707 JRNL DOI 10.1016/J.CELL.2012.11.014 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0027 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.4150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 384 REMARK 3 NUCLEIC ACID ATOMS : 486 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -0.73900 REMARK 3 B33 (A**2) : 1.87500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.39500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.162 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 940 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 662 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1359 ; 1.359 ; 1.602 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1530 ; 1.160 ; 3.010 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 50 ; 6.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ;40.342 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 79 ;14.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 127 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 719 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 213 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): -18.4712 -18.9190 8.1644 REMARK 3 T TENSOR REMARK 3 T11: 0.2734 T22: 0.5299 REMARK 3 T33: 0.1427 T12: -0.2114 REMARK 3 T13: 0.0867 T23: -0.1094 REMARK 3 L TENSOR REMARK 3 L11: 4.0949 L22: 9.4711 REMARK 3 L33: 4.6317 L12: 5.2510 REMARK 3 L13: -0.6890 L23: 0.4565 REMARK 3 S TENSOR REMARK 3 S11: -0.6484 S12: 0.9541 S13: -0.2178 REMARK 3 S21: -0.5534 S22: 0.5198 S23: 0.1219 REMARK 3 S31: -0.0817 S32: 0.0359 S33: 0.1286 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 12 REMARK 3 ORIGIN FOR THE GROUP (A): -18.7733 -18.0552 9.3508 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.3459 REMARK 3 T33: 0.1683 T12: -0.0713 REMARK 3 T13: -0.0169 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 9.5126 L22: 7.8003 REMARK 3 L33: 5.0148 L12: 6.4532 REMARK 3 L13: 0.5532 L23: 0.9141 REMARK 3 S TENSOR REMARK 3 S11: -0.1653 S12: 0.3001 S13: 0.0626 REMARK 3 S21: -0.4054 S22: 0.1393 S23: 0.2939 REMARK 3 S31: 0.1253 S32: -0.2641 S33: 0.0260 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 59 C 109 REMARK 3 ORIGIN FOR THE GROUP (A): -19.7853 -17.3567 19.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.2750 T22: 0.1512 REMARK 3 T33: 0.0413 T12: -0.0699 REMARK 3 T13: 0.0221 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.8636 L22: 10.3005 REMARK 3 L33: 5.4021 L12: 0.4324 REMARK 3 L13: -2.1731 L23: 0.3064 REMARK 3 S TENSOR REMARK 3 S11: -0.0772 S12: 0.3738 S13: 0.0030 REMARK 3 S21: -0.5485 S22: 0.1085 S23: -0.0284 REMARK 3 S31: -0.1633 S32: -0.1043 S33: -0.0313 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. COOT AND THE MOLPROBITY REMARK 3 SERVER WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 4HP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB075742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9281 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 34.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.710 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5727 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.71 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: UNPUBLISHED MODEL OF COMPLEX BETWEEN SAME PROTEIN REMARK 200 CONSTRUCT AND A METHYLATED DNA FRAGMENT. THAT STRUCTURE WAS REMARK 200 SOLVED BY A COMBINATION OF ZINC-SAD (SHELXD/E) AND MOLECULAR REMARK 200 REPLACEMENT IN "DENSITY" MODE (MOLREP), USING IDEAL DNA (COOT) REMARK 200 AND HUMAN MLL2 (CURRENTLY UNPUBLISHED) AS SEARCH MODELS. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-1500, 0.2M SODIUM CHLORIDE, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.94600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.72750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.94600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.72750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 40 REMARK 465 HIS C 41 REMARK 465 HIS C 42 REMARK 465 HIS C 43 REMARK 465 HIS C 44 REMARK 465 HIS C 45 REMARK 465 HIS C 46 REMARK 465 SER C 47 REMARK 465 SER C 48 REMARK 465 GLY C 49 REMARK 465 ARG C 50 REMARK 465 GLU C 51 REMARK 465 ASN C 52 REMARK 465 LEU C 53 REMARK 465 TYR C 54 REMARK 465 PHE C 55 REMARK 465 GLN C 56 REMARK 465 GLY C 57 REMARK 465 SER C 58 REMARK 465 LYS C 110 REMARK 465 GLY C 111 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 60 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 GLU C 75 CD OE1 OE2 REMARK 470 THR C 88 OG1 CG2 REMARK 470 LYS C 104 CG CD CE NZ REMARK 470 VAL C 106 CG1 CG2 REMARK 470 VAL C 107 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 5 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 60 -168.48 -109.25 REMARK 500 ASN C 85 51.47 -111.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 80 SG REMARK 620 2 CYS C 77 SG 112.1 REMARK 620 3 CYS C 83 SG 102.7 119.2 REMARK 620 4 CYS C 93 SG 116.2 102.4 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 71 SG REMARK 620 2 CYS C 98 SG 100.5 REMARK 620 3 CYS C 68 SG 101.2 124.5 REMARK 620 4 CYS C 65 SG 116.4 105.9 108.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HP1 RELATED DB: PDB DBREF 4HP3 C 58 111 UNP A0JP82 A0JP82_XENTR 58 111 DBREF 4HP3 A 1 12 PDB 4HP3 4HP3 1 12 DBREF 4HP3 B 1 12 PDB 4HP3 4HP3 1 12 SEQADV 4HP3 MET C 40 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 41 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 42 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 43 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 44 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 45 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 HIS C 46 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 SER C 47 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 SER C 48 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLY C 49 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 ARG C 50 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLU C 51 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 ASN C 52 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 LEU C 53 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 TYR C 54 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 PHE C 55 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLN C 56 UNP A0JP82 EXPRESSION TAG SEQADV 4HP3 GLY C 57 UNP A0JP82 EXPRESSION TAG SEQRES 1 A 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 B 12 DG DC DC DA DA DC DG DT DT DG DG DC SEQRES 1 C 72 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 C 72 LEU TYR PHE GLN GLY SER ASN LYS LYS ARG LYS ARG CYS SEQRES 3 C 72 GLY VAL CYS VAL PRO CYS LEU ARG LYS GLU PRO CYS GLY SEQRES 4 C 72 ALA CYS TYR ASN CYS VAL ASN ARG SER THR SER HIS GLN SEQRES 5 C 72 ILE CYS LYS MET ARG LYS CYS GLU GLN LEU LYS LYS LYS SEQRES 6 C 72 ARG VAL VAL PRO MET LYS GLY HET UNX A 101 1 HET UNX A 102 1 HET ZN C 201 1 HET ZN C 202 1 HET UNX C 203 1 HETNAM UNX UNKNOWN ATOM OR ION HETNAM ZN ZINC ION FORMUL 4 UNX 3(X) FORMUL 6 ZN 2(ZN 2+) FORMUL 9 HOH *23(H2 O) HELIX 1 1 CYS C 68 ARG C 73 1 6 HELIX 2 2 CYS C 80 ASN C 85 1 6 HELIX 3 3 ASN C 85 HIS C 90 1 6 LINK SG CYS C 80 ZN ZN C 202 1555 1555 2.28 LINK SG CYS C 71 ZN ZN C 201 1555 1555 2.28 LINK SG CYS C 98 ZN ZN C 201 1555 1555 2.30 LINK SG CYS C 68 ZN ZN C 201 1555 1555 2.31 LINK SG CYS C 77 ZN ZN C 202 1555 1555 2.33 LINK SG CYS C 83 ZN ZN C 202 1555 1555 2.34 LINK SG CYS C 65 ZN ZN C 201 1555 1555 2.34 LINK SG CYS C 93 ZN ZN C 202 1555 1555 2.38 SITE 1 AC1 4 CYS C 65 CYS C 68 CYS C 71 CYS C 98 SITE 1 AC2 4 CYS C 77 CYS C 80 CYS C 83 CYS C 93 CRYST1 69.892 39.455 54.134 90.00 99.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014308 0.000000 0.002502 0.00000 SCALE2 0.000000 0.025345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018753 0.00000 MASTER 406 0 5 3 0 0 2 6 0 0 0 8 END