HEADER OXIDOREDUCTASE 22-OCT-12 4HON TITLE CRYSTAL STRUCTURE OF HUMAN JMJD2D/KDM4D IN COMPLEX WITH AN H3K9ME3 TITLE 2 PEPTIDE AND 2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC DEMETHYLASE 4D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 12-341; COMPND 5 SYNONYM: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 3D, COMPND 6 JUMONJI DOMAIN-CONTAINING PROTEIN 2D; COMPND 7 EC: 1.14.11.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H3 PEPTIDE; COMPND 11 CHAIN: F, G; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JHDM3D, JMJD2D, KDM4D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(ROSETTA 2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHT4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS JUMONJI C DEMETHYLASE, JMJD2/KDM4 FAMILY, BETA BARREL FOLD, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KRISHNAN,R.C.TRIEVEL REVDAT 4 15-NOV-17 4HON 1 REMARK REVDAT 3 30-JAN-13 4HON 1 JRNL REVDAT 2 02-JAN-13 4HON 1 JRNL REVDAT 1 21-NOV-12 4HON 0 JRNL AUTH S.KRISHNAN,R.C.TRIEVEL JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF JMJD2D REVEALS JRNL TITL 2 MOLECULAR BASIS FOR SITE-SPECIFIC DEMETHYLATION AMONG JMJD2 JRNL TITL 3 DEMETHYLASES. JRNL REF STRUCTURE V. 21 98 2013 JRNL REFN ISSN 0969-2126 JRNL PMID 23219879 JRNL DOI 10.1016/J.STR.2012.10.018 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 89102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 341 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.73000 REMARK 3 B33 (A**2) : 0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.006 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5715 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7736 ; 1.434 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 695 ; 5.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 277 ;36.317 ;23.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 873 ;11.555 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.460 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 786 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4498 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3444 ; 0.865 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5460 ; 1.554 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2271 ; 2.442 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2265 ; 3.857 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89438 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.799 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 2Q8C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7% PEG 3350, 0.1M SODIUM THIOCYANATE, REMARK 280 0.35M POTASSIUM NITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.10100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.96900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.83750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.96900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.10100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.83750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR G 6 REMARK 465 LYS G 14 REMARK 465 ALA G 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CD CE NZ REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 LYS A 58 CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 LYS A 92 NZ REMARK 470 LYS A 93 NZ REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 108 CD CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 ARG A 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 255 CD CE NZ REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 LYS B 58 CE NZ REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 92 NZ REMARK 470 LYS B 108 CD CE NZ REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 166 CE NZ REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 255 CD CE NZ REMARK 470 ARG B 316 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 341 CG OD1 OD2 REMARK 470 LYS F 14 CG CD CE NZ REMARK 470 ARG G 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 102 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 102 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 56.90 39.82 REMARK 500 HIS A 156 55.69 -150.25 REMARK 500 LYS A 186 -10.94 82.90 REMARK 500 MET A 196 18.31 59.33 REMARK 500 ASN B 117 -177.57 -170.76 REMARK 500 SER B 133 118.57 -38.92 REMARK 500 HIS B 156 49.70 -152.01 REMARK 500 VAL B 175 -61.15 -91.80 REMARK 500 LYS B 186 -7.80 78.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 508 O REMARK 620 2 GLU B 194 OE1 89.1 REMARK 620 3 HIS B 280 NE2 176.6 87.7 REMARK 620 4 HIS B 192 NE2 90.9 99.3 88.2 REMARK 620 5 AKG B 401 O2 84.4 94.7 97.2 165.2 REMARK 620 6 AKG B 401 O5 87.5 170.4 95.8 89.7 76.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 238 SG REMARK 620 2 HIS B 244 NE2 110.3 REMARK 620 3 CYS B 310 SG 116.3 113.9 REMARK 620 4 CYS B 312 SG 115.3 94.3 104.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 402 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AKG A 401 O2 REMARK 620 2 HOH A 507 O 86.6 REMARK 620 3 HIS A 280 NE2 96.4 176.9 REMARK 620 4 GLU A 194 OE1 95.3 85.8 93.2 REMARK 620 5 HIS A 192 NE2 165.7 89.4 87.8 98.1 REMARK 620 6 AKG A 401 O5 77.8 88.4 93.0 171.2 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 244 NE2 REMARK 620 2 CYS A 238 SG 112.6 REMARK 620 3 CYS A 310 SG 114.5 113.8 REMARK 620 4 CYS A 312 SG 93.0 119.3 101.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO A 418 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO B 411 DBREF 4HON A 12 341 UNP Q6B0I6 KDM4D_HUMAN 12 341 DBREF 4HON B 12 341 UNP Q6B0I6 KDM4D_HUMAN 12 341 DBREF 4HON F 6 15 PDB 4HON 4HON 6 15 DBREF 4HON G 6 15 PDB 4HON 4HON 6 15 SEQRES 1 A 330 GLN ASN PRO ASN CYS ASN ILE MET ILE PHE HIS PRO THR SEQRES 2 A 330 LYS GLU GLU PHE ASN ASP PHE ASP LYS TYR ILE ALA TYR SEQRES 3 A 330 MET GLU SER GLN GLY ALA HIS ARG ALA GLY LEU ALA LYS SEQRES 4 A 330 ILE ILE PRO PRO LYS GLU TRP LYS ALA ARG GLU THR TYR SEQRES 5 A 330 ASP ASN ILE SER GLU ILE LEU ILE ALA THR PRO LEU GLN SEQRES 6 A 330 GLN VAL ALA SER GLY ARG ALA GLY VAL PHE THR GLN TYR SEQRES 7 A 330 HIS LYS LYS LYS LYS ALA MET THR VAL GLY GLU TYR ARG SEQRES 8 A 330 HIS LEU ALA ASN SER LYS LYS TYR GLN THR PRO PRO HIS SEQRES 9 A 330 GLN ASN PHE GLU ASP LEU GLU ARG LYS TYR TRP LYS ASN SEQRES 10 A 330 ARG ILE TYR ASN SER PRO ILE TYR GLY ALA ASP ILE SER SEQRES 11 A 330 GLY SER LEU PHE ASP GLU ASN THR LYS GLN TRP ASN LEU SEQRES 12 A 330 GLY HIS LEU GLY THR ILE GLN ASP LEU LEU GLU LYS GLU SEQRES 13 A 330 CYS GLY VAL VAL ILE GLU GLY VAL ASN THR PRO TYR LEU SEQRES 14 A 330 TYR PHE GLY MET TRP LYS THR THR PHE ALA TRP HIS THR SEQRES 15 A 330 GLU ASP MET ASP LEU TYR SER ILE ASN TYR LEU HIS LEU SEQRES 16 A 330 GLY GLU PRO LYS THR TRP TYR VAL VAL PRO PRO GLU HIS SEQRES 17 A 330 GLY GLN ARG LEU GLU ARG LEU ALA ARG GLU LEU PHE PRO SEQRES 18 A 330 GLY SER SER ARG GLY CYS GLY ALA PHE LEU ARG HIS LYS SEQRES 19 A 330 VAL ALA LEU ILE SER PRO THR VAL LEU LYS GLU ASN GLY SEQRES 20 A 330 ILE PRO PHE ASN ARG ILE THR GLN GLU ALA GLY GLU PHE SEQRES 21 A 330 MET VAL THR PHE PRO TYR GLY TYR HIS ALA GLY PHE ASN SEQRES 22 A 330 HIS GLY PHE ASN CYS ALA GLU ALA ILE ASN PHE ALA THR SEQRES 23 A 330 PRO ARG TRP ILE ASP TYR GLY LYS MET ALA SER GLN CYS SEQRES 24 A 330 SER CYS GLY GLU ALA ARG VAL THR PHE SER MET ASP ALA SEQRES 25 A 330 PHE VAL ARG ILE LEU GLN PRO GLU ARG TYR ASP LEU TRP SEQRES 26 A 330 LYS ARG GLY GLN ASP SEQRES 1 B 330 GLN ASN PRO ASN CYS ASN ILE MET ILE PHE HIS PRO THR SEQRES 2 B 330 LYS GLU GLU PHE ASN ASP PHE ASP LYS TYR ILE ALA TYR SEQRES 3 B 330 MET GLU SER GLN GLY ALA HIS ARG ALA GLY LEU ALA LYS SEQRES 4 B 330 ILE ILE PRO PRO LYS GLU TRP LYS ALA ARG GLU THR TYR SEQRES 5 B 330 ASP ASN ILE SER GLU ILE LEU ILE ALA THR PRO LEU GLN SEQRES 6 B 330 GLN VAL ALA SER GLY ARG ALA GLY VAL PHE THR GLN TYR SEQRES 7 B 330 HIS LYS LYS LYS LYS ALA MET THR VAL GLY GLU TYR ARG SEQRES 8 B 330 HIS LEU ALA ASN SER LYS LYS TYR GLN THR PRO PRO HIS SEQRES 9 B 330 GLN ASN PHE GLU ASP LEU GLU ARG LYS TYR TRP LYS ASN SEQRES 10 B 330 ARG ILE TYR ASN SER PRO ILE TYR GLY ALA ASP ILE SER SEQRES 11 B 330 GLY SER LEU PHE ASP GLU ASN THR LYS GLN TRP ASN LEU SEQRES 12 B 330 GLY HIS LEU GLY THR ILE GLN ASP LEU LEU GLU LYS GLU SEQRES 13 B 330 CYS GLY VAL VAL ILE GLU GLY VAL ASN THR PRO TYR LEU SEQRES 14 B 330 TYR PHE GLY MET TRP LYS THR THR PHE ALA TRP HIS THR SEQRES 15 B 330 GLU ASP MET ASP LEU TYR SER ILE ASN TYR LEU HIS LEU SEQRES 16 B 330 GLY GLU PRO LYS THR TRP TYR VAL VAL PRO PRO GLU HIS SEQRES 17 B 330 GLY GLN ARG LEU GLU ARG LEU ALA ARG GLU LEU PHE PRO SEQRES 18 B 330 GLY SER SER ARG GLY CYS GLY ALA PHE LEU ARG HIS LYS SEQRES 19 B 330 VAL ALA LEU ILE SER PRO THR VAL LEU LYS GLU ASN GLY SEQRES 20 B 330 ILE PRO PHE ASN ARG ILE THR GLN GLU ALA GLY GLU PHE SEQRES 21 B 330 MET VAL THR PHE PRO TYR GLY TYR HIS ALA GLY PHE ASN SEQRES 22 B 330 HIS GLY PHE ASN CYS ALA GLU ALA ILE ASN PHE ALA THR SEQRES 23 B 330 PRO ARG TRP ILE ASP TYR GLY LYS MET ALA SER GLN CYS SEQRES 24 B 330 SER CYS GLY GLU ALA ARG VAL THR PHE SER MET ASP ALA SEQRES 25 B 330 PHE VAL ARG ILE LEU GLN PRO GLU ARG TYR ASP LEU TRP SEQRES 26 B 330 LYS ARG GLY GLN ASP SEQRES 1 F 10 THR ALA ARG M3L SER THR GLY GLY LYS ALA SEQRES 1 G 10 THR ALA ARG M3L SER THR GLY GLY LYS ALA MODRES 4HON M3L F 9 LYS N-TRIMETHYLLYSINE MODRES 4HON M3L G 9 LYS N-TRIMETHYLLYSINE HET M3L F 9 12 HET M3L G 9 12 HET AKG A 401 10 HET NI A 402 1 HET ZN A 403 1 HET SCN A 404 3 HET SCN A 405 3 HET SCN A 406 3 HET NO3 A 407 4 HET NO3 A 408 4 HET NO3 A 409 4 HET NO3 A 410 4 HET NO3 A 411 4 HET NO3 A 412 4 HET NO3 A 413 4 HET NO3 A 414 4 HET PDO A 415 5 HET PDO A 416 5 HET PDO A 417 5 HET PDO A 418 5 HET AKG B 401 10 HET NI B 402 1 HET ZN B 403 1 HET SCN B 404 3 HET SCN B 405 3 HET SCN B 406 3 HET NO3 B 407 4 HET NO3 B 408 4 HET NO3 B 409 4 HET NO3 B 410 4 HET PDO B 411 5 HETNAM M3L N-TRIMETHYLLYSINE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM NI NICKEL (II) ION HETNAM ZN ZINC ION HETNAM SCN THIOCYANATE ION HETNAM NO3 NITRATE ION HETNAM PDO 1,3-PROPANDIOL FORMUL 3 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 AKG 2(C5 H6 O5) FORMUL 6 NI 2(NI 2+) FORMUL 7 ZN 2(ZN 2+) FORMUL 8 SCN 6(C N S 1-) FORMUL 11 NO3 12(N O3 1-) FORMUL 19 PDO 5(C3 H8 O2) FORMUL 34 HOH *408(H2 O) HELIX 1 1 LYS A 25 ASN A 29 5 5 HELIX 2 2 ASP A 30 GLN A 41 1 12 HELIX 3 3 GLY A 42 ALA A 46 5 5 HELIX 4 4 VAL A 98 ASN A 106 1 9 HELIX 5 5 ASN A 117 ASN A 128 1 12 HELIX 6 6 THR A 159 GLN A 161 5 3 HELIX 7 7 ASP A 162 GLY A 169 1 8 HELIX 8 8 GLU A 194 LEU A 198 5 5 HELIX 9 9 PRO A 216 GLU A 218 5 3 HELIX 10 10 HIS A 219 PHE A 231 1 13 HELIX 11 11 ALA A 240 LYS A 245 5 6 HELIX 12 12 SER A 250 ASN A 257 1 8 HELIX 13 13 THR A 297 ARG A 299 5 3 HELIX 14 14 TRP A 300 ALA A 307 1 8 HELIX 15 15 MET A 321 GLN A 329 1 9 HELIX 16 16 ARG A 332 ASP A 341 1 10 HELIX 17 17 LYS B 25 ASN B 29 5 5 HELIX 18 18 ASP B 30 GLN B 41 1 12 HELIX 19 19 GLY B 42 ALA B 46 5 5 HELIX 20 20 ASN B 65 GLU B 68 5 4 HELIX 21 21 VAL B 98 SER B 107 1 10 HELIX 22 22 ASN B 117 ASN B 128 1 12 HELIX 23 23 THR B 159 GLN B 161 5 3 HELIX 24 24 ASP B 162 GLY B 169 1 8 HELIX 25 25 GLU B 194 LEU B 198 5 5 HELIX 26 26 PRO B 216 GLU B 218 5 3 HELIX 27 27 HIS B 219 PHE B 231 1 13 HELIX 28 28 GLY B 233 CYS B 238 1 6 HELIX 29 29 ALA B 240 LYS B 245 5 6 HELIX 30 30 SER B 250 ASN B 257 1 8 HELIX 31 31 THR B 297 ARG B 299 5 3 HELIX 32 32 TRP B 300 ALA B 307 1 8 HELIX 33 33 MET B 321 GLN B 329 1 9 HELIX 34 34 ARG B 332 ASP B 341 1 10 SHEET 1 A10 MET A 19 PHE A 21 0 SHEET 2 A10 LEU A 48 ILE A 51 1 O LYS A 50 N PHE A 21 SHEET 3 A10 PHE A 271 THR A 274 -1 O PHE A 271 N ILE A 51 SHEET 4 A10 TYR A 199 GLY A 207 -1 N ASN A 202 O MET A 272 SHEET 5 A10 ASN A 288 PHE A 295 -1 O GLU A 291 N TYR A 203 SHEET 6 A10 TYR A 179 GLY A 183 -1 N TYR A 181 O ALA A 290 SHEET 7 A10 ILE A 135 SER A 141 -1 N GLY A 137 O PHE A 182 SHEET 8 A10 LEU A 75 ARG A 82 -1 N LEU A 75 O TYR A 136 SHEET 9 A10 VAL A 85 LYS A 92 -1 O LYS A 91 N GLN A 76 SHEET 10 A10 ALA A 247 ILE A 249 -1 O LEU A 248 N PHE A 86 SHEET 1 B 2 LEU A 70 ILE A 71 0 SHEET 2 B 2 MET A 96 THR A 97 -1 O MET A 96 N ILE A 71 SHEET 1 C 4 THR A 188 HIS A 192 0 SHEET 2 C 4 TYR A 279 ASN A 284 -1 O HIS A 280 N HIS A 192 SHEET 3 C 4 LYS A 210 VAL A 215 -1 N THR A 211 O PHE A 283 SHEET 4 C 4 ASN A 262 GLN A 266 -1 O GLN A 266 N LYS A 210 SHEET 1 D10 MET B 19 PHE B 21 0 SHEET 2 D10 LEU B 48 ILE B 51 1 O LYS B 50 N PHE B 21 SHEET 3 D10 PHE B 271 THR B 274 -1 O PHE B 271 N ILE B 51 SHEET 4 D10 TYR B 199 GLY B 207 -1 N SER B 200 O THR B 274 SHEET 5 D10 ASN B 288 PHE B 295 -1 O GLU B 291 N TYR B 203 SHEET 6 D10 TYR B 179 GLY B 183 -1 N TYR B 181 O ALA B 290 SHEET 7 D10 ILE B 135 SER B 141 -1 N GLY B 137 O PHE B 182 SHEET 8 D10 LEU B 75 ARG B 82 -1 N LEU B 75 O TYR B 136 SHEET 9 D10 VAL B 85 LYS B 92 -1 O LYS B 91 N GLN B 76 SHEET 10 D10 ALA B 247 ILE B 249 -1 O LEU B 248 N PHE B 86 SHEET 1 E 2 LEU B 70 ILE B 71 0 SHEET 2 E 2 MET B 96 THR B 97 -1 O MET B 96 N ILE B 71 SHEET 1 F 4 THR B 188 HIS B 192 0 SHEET 2 F 4 TYR B 279 ASN B 284 -1 O HIS B 280 N HIS B 192 SHEET 3 F 4 LYS B 210 VAL B 215 -1 N TYR B 213 O ALA B 281 SHEET 4 F 4 ASN B 262 GLN B 266 -1 O GLN B 266 N LYS B 210 LINK C ARG F 8 N M3L F 9 1555 1555 1.32 LINK C M3L F 9 N SER F 10 1555 1555 1.34 LINK C ARG G 8 N M3L G 9 1555 1555 1.34 LINK C M3L G 9 N SER G 10 1555 1555 1.34 LINK NI NI B 402 O HOH B 508 1555 1555 1.99 LINK SG CYS B 238 ZN ZN B 403 1555 1555 2.00 LINK OE1 GLU B 194 NI NI B 402 1555 1555 2.07 LINK O2 AKG A 401 NI NI A 402 1555 1555 2.09 LINK NE2 HIS B 280 NI NI B 402 1555 1555 2.09 LINK NI NI A 402 O HOH A 507 1555 1555 2.10 LINK NE2 HIS A 280 NI NI A 402 1555 1555 2.10 LINK OE1 GLU A 194 NI NI A 402 1555 1555 2.10 LINK NE2 HIS A 244 ZN ZN A 403 1555 1555 2.10 LINK NE2 HIS B 192 NI NI B 402 1555 1555 2.12 LINK NE2 HIS A 192 NI NI A 402 1555 1555 2.14 LINK O2 AKG B 401 NI NI B 402 1555 1555 2.15 LINK NE2 HIS B 244 ZN ZN B 403 1555 1555 2.17 LINK O5 AKG B 401 NI NI B 402 1555 1555 2.18 LINK O5 AKG A 401 NI NI A 402 1555 1555 2.19 LINK SG CYS A 238 ZN ZN A 403 1555 1555 2.19 LINK SG CYS B 310 ZN ZN B 403 1555 1555 2.20 LINK SG CYS A 310 ZN ZN A 403 1555 1555 2.28 LINK SG CYS A 312 ZN ZN A 403 1555 1555 2.40 LINK SG CYS B 312 ZN ZN B 403 1555 1555 2.40 SITE 1 AC1 14 TYR A 136 PHE A 189 HIS A 192 GLU A 194 SITE 2 AC1 14 SER A 200 ASN A 202 LYS A 210 TRP A 212 SITE 3 AC1 14 HIS A 280 NI A 402 PDO A 415 HOH A 507 SITE 4 AC1 14 M3L F 9 HOH F 101 SITE 1 AC2 5 HIS A 192 GLU A 194 HIS A 280 AKG A 401 SITE 2 AC2 5 HOH A 507 SITE 1 AC3 4 CYS A 238 HIS A 244 CYS A 310 CYS A 312 SITE 1 AC4 3 LYS A 150 GLN A 151 SCN A 406 SITE 1 AC5 1 GLU A 27 SITE 1 AC6 3 LYS A 58 THR A 149 SCN A 404 SITE 1 AC7 6 GLU A 224 ALA A 240 PHE A 241 LEU A 242 SITE 2 AC7 6 HOH A 664 HOH A 683 SITE 1 AC8 7 LYS A 305 ARG A 332 LEU A 335 TRP A 336 SITE 2 AC8 7 HOH A 549 ASP B 302 MET B 306 SITE 1 AC9 6 LYS A 305 MET A 321 TRP A 336 GLN A 340 SITE 2 AC9 6 HOH A 630 HOH A 652 SITE 1 BC1 8 ASP A 302 MET A 306 HOH A 602 HOH A 697 SITE 2 BC1 8 LYS B 305 ARG B 332 LEU B 335 TRP B 336 SITE 1 BC2 6 GLU A 314 ALA A 315 ARG A 316 VAL A 317 SITE 2 BC2 6 ALA F 7 ARG F 8 SITE 1 BC3 6 PRO A 113 LYS A 124 ASN A 128 TRP A 185 SITE 2 BC3 6 LYS A 186 HOH A 510 SITE 1 BC4 1 HOH A 720 SITE 1 BC5 4 SER A 67 VAL A 98 GLY A 99 ARG A 102 SITE 1 BC6 10 PHE A 189 ALA A 190 HIS A 192 LYS A 245 SITE 2 BC6 10 AKG A 401 HOH A 507 HOH A 537 SER F 10 SITE 3 BC6 10 THR F 11 HOH F 101 SITE 1 BC7 6 THR A 87 TYR A 89 PHE A 231 PRO A 232 SITE 2 BC7 6 HOH A 536 HOH A 561 SITE 1 BC8 2 GLY A 142 SER A 143 SITE 1 BC9 7 MET A 19 ILE A 20 ILE B 20 PHE B 21 SITE 2 BC9 7 HIS B 22 TYR B 34 HOH B 570 SITE 1 CC1 14 TYR B 136 PHE B 189 HIS B 192 GLU B 194 SITE 2 CC1 14 SER B 200 ASN B 202 LYS B 210 TRP B 212 SITE 3 CC1 14 HIS B 280 ALA B 292 NI B 402 HOH B 508 SITE 4 CC1 14 HOH B 524 M3L G 9 SITE 1 CC2 5 HIS B 192 GLU B 194 HIS B 280 AKG B 401 SITE 2 CC2 5 HOH B 508 SITE 1 CC3 4 CYS B 238 HIS B 244 CYS B 310 CYS B 312 SITE 1 CC4 2 ARG B 60 ASN B 65 SITE 1 CC5 3 LYS B 58 THR B 149 HOH B 655 SITE 1 CC6 4 GLU A 68 LYS B 124 ASN B 128 HOH B 576 SITE 1 CC7 4 GLU B 224 ALA B 240 PHE B 241 LEU B 242 SITE 1 CC8 8 PRO A 217 GLU A 218 TYR A 277 TYR A 303 SITE 2 CC8 8 HOH A 625 ASP B 334 LEU B 335 ARG B 338 SITE 1 CC9 8 ASP A 334 LEU A 335 ARG A 338 PRO B 217 SITE 2 CC9 8 GLU B 218 TYR B 277 TYR B 303 HOH B 594 SITE 1 DC1 6 LYS B 124 ASN B 128 TRP B 185 LYS B 186 SITE 2 DC1 6 HOH B 521 HOH B 584 SITE 1 DC2 2 ILE B 140 SER B 143 CRYST1 72.202 79.675 175.938 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005684 0.00000 MASTER 503 0 31 34 32 0 50 6 0 0 0 54 END