HEADER DNA BINDING PROTEIN 22-OCT-12 4HOB TITLE THE CRYSTAL STRUCTURE OF THE ZALPHA DOMAIN FROM CYPRINID HERPES VIRUS TITLE 2 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: ZALPHA DOMAIN, UNP RESIDUES 216-278; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYPRINID HERPESVIRUS 3; SOURCE 3 ORGANISM_TAXID: 180230; SOURCE 4 GENE: KHVJ122, ORF112; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DOMAIN SWAPPING, Z-DNA BINDING DOMAIN, DNA AND RNA BINDING, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.R.TOME,K.KUS,M.DE ROSA,L.M.PAULO,D.FIGUEIREDO,A.ATHANASIADIS REVDAT 4 18-DEC-19 4HOB 1 REMARK REVDAT 3 04-DEC-19 4HOB 1 REMARK SEQADV REVDAT 2 04-MAR-15 4HOB 1 AUTHOR JRNL REVDAT 1 11-SEP-13 4HOB 0 JRNL AUTH A.R.TOME,K.KUS,S.CORREIA,L.M.PAULO,S.ZACARIAS,M.DE ROSA, JRNL AUTH 2 D.FIGUEIREDO,R.M.PARKHOUSE,A.ATHANASIADIS JRNL TITL CRYSTAL STRUCTURE OF A POXVIRUS-LIKE ZALPHA DOMAIN FROM JRNL TITL 2 CYPRINID HERPESVIRUS 3 JRNL REF J.VIROL. V. 87 3998 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23365431 JRNL DOI 10.1128/JVI.03116-12 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 23670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1991 - 3.5135 0.97 3057 161 0.1757 0.2099 REMARK 3 2 3.5135 - 2.7889 0.99 2962 158 0.1927 0.2374 REMARK 3 3 2.7889 - 2.4364 0.98 2923 156 0.2007 0.2530 REMARK 3 4 2.4364 - 2.2136 0.98 2925 147 0.2212 0.2627 REMARK 3 5 2.2136 - 2.0550 0.98 2888 154 0.2177 0.2799 REMARK 3 6 2.0550 - 1.9338 0.98 2874 150 0.2519 0.3407 REMARK 3 7 1.9338 - 1.8370 0.95 2785 139 0.2886 0.3312 REMARK 3 8 1.8370 - 1.7600 0.71 2082 109 0.3208 0.4182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 59.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.77360 REMARK 3 B22 (A**2) : -6.16180 REMARK 3 B33 (A**2) : 0.38820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2093 REMARK 3 ANGLE : 0.677 2833 REMARK 3 CHIRALITY : 0.047 293 REMARK 3 PLANARITY : 0.002 359 REMARK 3 DIHEDRAL : 12.633 782 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 217:237) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9645 -12.4054 0.3379 REMARK 3 T TENSOR REMARK 3 T11: 0.2690 T22: 0.1828 REMARK 3 T33: 0.1509 T12: 0.0074 REMARK 3 T13: -0.0104 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 6.7508 L22: 0.3384 REMARK 3 L33: 8.4524 L12: -0.2345 REMARK 3 L13: -0.9591 L23: -1.5521 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: -0.1695 S13: -0.5685 REMARK 3 S21: -0.1320 S22: -0.0879 S23: -0.2602 REMARK 3 S31: 0.7580 S32: 0.0770 S33: -0.0851 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 238:248) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8612 -12.3490 -3.2388 REMARK 3 T TENSOR REMARK 3 T11: 0.2609 T22: 0.2899 REMARK 3 T33: 0.3456 T12: 0.1275 REMARK 3 T13: 0.0730 T23: 0.1187 REMARK 3 L TENSOR REMARK 3 L11: 6.1311 L22: 7.2109 REMARK 3 L33: 7.3783 L12: -6.5719 REMARK 3 L13: -6.4719 L23: 6.6357 REMARK 3 S TENSOR REMARK 3 S11: -0.0608 S12: -0.7084 S13: 0.0449 REMARK 3 S21: 0.2697 S22: -0.1392 S23: -0.7870 REMARK 3 S31: 0.3500 S32: 1.7516 S33: -0.2220 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 249:261) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5906 -15.2258 -8.8156 REMARK 3 T TENSOR REMARK 3 T11: 0.7616 T22: 0.2644 REMARK 3 T33: 0.3519 T12: -0.0303 REMARK 3 T13: -0.0936 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 2.4530 L22: 1.4807 REMARK 3 L33: 5.2420 L12: 0.5655 REMARK 3 L13: -2.1458 L23: 1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.5770 S12: 0.4514 S13: -0.2030 REMARK 3 S21: -1.1039 S22: 0.1714 S23: 0.0111 REMARK 3 S31: 1.4282 S32: -0.0942 S33: 0.2296 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 262:271) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6020 -5.5743 -8.4046 REMARK 3 T TENSOR REMARK 3 T11: 0.2399 T22: 0.3501 REMARK 3 T33: 0.3522 T12: -0.0928 REMARK 3 T13: -0.0482 T23: 0.1267 REMARK 3 L TENSOR REMARK 3 L11: 0.6963 L22: 3.1652 REMARK 3 L33: 8.6214 L12: -0.4003 REMARK 3 L13: 1.0347 L23: -4.5879 REMARK 3 S TENSOR REMARK 3 S11: 0.6128 S12: 0.0217 S13: 0.1227 REMARK 3 S21: 0.1579 S22: 0.3607 S23: 1.3769 REMARK 3 S31: 0.2025 S32: -0.6011 S33: -0.6875 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 272:278) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8374 -4.6929 -24.8274 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.1120 REMARK 3 T33: 0.2985 T12: 0.0001 REMARK 3 T13: -0.0588 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.4525 L22: 2.2869 REMARK 3 L33: 2.8803 L12: 2.4456 REMARK 3 L13: -0.0919 L23: -1.6889 REMARK 3 S TENSOR REMARK 3 S11: 0.2542 S12: -0.0676 S13: -0.6803 REMARK 3 S21: -0.1179 S22: -0.0636 S23: -0.8002 REMARK 3 S31: 0.3140 S32: -0.2967 S33: 0.0617 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 215:219) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8724 -24.1926 -22.1551 REMARK 3 T TENSOR REMARK 3 T11: 0.8029 T22: 0.4354 REMARK 3 T33: 0.2902 T12: -0.1708 REMARK 3 T13: 0.0572 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 2.6750 L22: 3.9119 REMARK 3 L33: 1.7093 L12: -2.8091 REMARK 3 L13: -2.0497 L23: 2.5163 REMARK 3 S TENSOR REMARK 3 S11: -0.4992 S12: -1.4329 S13: -0.8455 REMARK 3 S21: 1.9461 S22: -1.1770 S23: 0.2575 REMARK 3 S31: 2.5401 S32: 0.3570 S33: 0.5486 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 220:232) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1060 -12.9173 -31.2477 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.1795 REMARK 3 T33: 0.2368 T12: -0.0257 REMARK 3 T13: -0.0478 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 3.8482 L22: 8.7536 REMARK 3 L33: 6.6412 L12: -3.5230 REMARK 3 L13: -0.6818 L23: -3.0300 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: -0.0048 S13: -0.1510 REMARK 3 S21: -0.1675 S22: -0.2040 S23: 0.0219 REMARK 3 S31: 0.2522 S32: -0.2625 S33: 0.0835 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 233:248) REMARK 3 ORIGIN FOR THE GROUP (A): 3.2250 -6.1421 -26.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.2352 REMARK 3 T33: 0.2512 T12: 0.0237 REMARK 3 T13: -0.0778 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 5.1019 L22: 8.3356 REMARK 3 L33: 6.4148 L12: 5.4196 REMARK 3 L13: -4.0582 L23: -4.4055 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: -0.4032 S13: 0.5961 REMARK 3 S21: -0.2123 S22: -0.1682 S23: 0.5267 REMARK 3 S31: -0.2209 S32: -0.2361 S33: 0.1009 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 249:261) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2597 -14.4806 -20.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.4663 T22: 0.2184 REMARK 3 T33: 0.3174 T12: 0.0046 REMARK 3 T13: -0.1433 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 3.7615 L22: 2.4365 REMARK 3 L33: 8.0517 L12: -1.9878 REMARK 3 L13: 3.6799 L23: -2.0994 REMARK 3 S TENSOR REMARK 3 S11: -0.4179 S12: -0.6416 S13: 0.5068 REMARK 3 S21: 0.8740 S22: 0.3953 S23: -0.8068 REMARK 3 S31: 0.2754 S32: -0.5091 S33: 0.0206 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 262:277) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8339 -6.0670 -14.7325 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.1982 REMARK 3 T33: 0.2449 T12: 0.0505 REMARK 3 T13: -0.0539 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.3154 L22: 3.5459 REMARK 3 L33: 6.3479 L12: 0.2561 REMARK 3 L13: -0.7414 L23: 3.8696 REMARK 3 S TENSOR REMARK 3 S11: 0.2262 S12: 0.0176 S13: -0.1639 REMARK 3 S21: -0.2510 S22: 0.2168 S23: -0.2058 REMARK 3 S31: -0.0034 S32: 0.1555 S33: -0.5628 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 212:237) REMARK 3 ORIGIN FOR THE GROUP (A): 17.2616 17.4633 -29.9803 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.1484 REMARK 3 T33: 0.1501 T12: -0.0234 REMARK 3 T13: -0.0352 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 3.1006 L22: 2.4628 REMARK 3 L33: 4.7903 L12: -2.5572 REMARK 3 L13: 0.5441 L23: 0.6772 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: 0.1535 S13: 0.2737 REMARK 3 S21: -0.1105 S22: -0.0704 S23: -0.4451 REMARK 3 S31: -0.4426 S32: -0.0025 S33: -0.0517 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 238:266) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5289 16.6969 -24.5360 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1711 REMARK 3 T33: 0.2130 T12: -0.0270 REMARK 3 T13: -0.0326 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.2208 L22: 4.5000 REMARK 3 L33: 5.5483 L12: 1.8333 REMARK 3 L13: 1.8136 L23: 1.0280 REMARK 3 S TENSOR REMARK 3 S11: 0.2052 S12: -0.2864 S13: 0.8032 REMARK 3 S21: 0.1418 S22: -0.0738 S23: -0.4915 REMARK 3 S31: -0.3028 S32: 0.0819 S33: 0.0146 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN C AND (RESSEQ 267:278) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6494 7.3051 -10.1603 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1802 REMARK 3 T33: 0.1958 T12: -0.0044 REMARK 3 T13: -0.0027 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.6172 L22: 6.7785 REMARK 3 L33: 2.2865 L12: -0.7336 REMARK 3 L13: -1.8869 L23: 1.8278 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: -0.0244 S13: -0.2772 REMARK 3 S21: -0.1944 S22: 0.1570 S23: -0.1113 REMARK 3 S31: -0.4147 S32: -0.5922 S33: 0.0829 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 219:232) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6589 16.1877 3.9175 REMARK 3 T TENSOR REMARK 3 T11: 0.3896 T22: 0.2273 REMARK 3 T33: 0.2670 T12: -0.0114 REMARK 3 T13: 0.0311 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 9.1935 L22: 4.5413 REMARK 3 L33: 4.7332 L12: 6.4370 REMARK 3 L13: 2.3747 L23: 2.1124 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: -0.4022 S13: 0.9570 REMARK 3 S21: 0.0166 S22: -0.2052 S23: 0.6166 REMARK 3 S31: -0.7724 S32: -0.1504 S33: 0.2341 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 233:248) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9446 12.7505 -1.8554 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.3249 REMARK 3 T33: 0.2996 T12: 0.0899 REMARK 3 T13: 0.0028 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.7813 L22: 3.6987 REMARK 3 L33: 6.8296 L12: -1.0816 REMARK 3 L13: 0.9375 L23: -4.5689 REMARK 3 S TENSOR REMARK 3 S11: -0.3839 S12: -0.3906 S13: 0.1344 REMARK 3 S21: 0.3533 S22: 0.3267 S23: 0.2577 REMARK 3 S31: 0.0478 S32: -1.0814 S33: -0.0423 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 249:266) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6967 17.6015 -5.4331 REMARK 3 T TENSOR REMARK 3 T11: 0.4418 T22: 0.2647 REMARK 3 T33: 0.3024 T12: -0.1046 REMARK 3 T13: 0.0321 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 8.1084 L22: 3.1440 REMARK 3 L33: 8.7801 L12: -3.5377 REMARK 3 L13: 2.0943 L23: -1.3406 REMARK 3 S TENSOR REMARK 3 S11: 0.2779 S12: 0.1600 S13: 1.1316 REMARK 3 S21: 0.1835 S22: -0.0755 S23: -0.4050 REMARK 3 S31: -1.8294 S32: 0.6609 S33: -0.1756 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN D AND (RESSEQ 267:278) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2956 7.3591 -20.0786 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.2239 REMARK 3 T33: 0.2383 T12: -0.0468 REMARK 3 T13: -0.0605 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 4.2401 L22: 1.9775 REMARK 3 L33: 0.3179 L12: -0.5930 REMARK 3 L13: -0.9705 L23: -0.2638 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.1794 S13: -0.3112 REMARK 3 S21: -0.1020 S22: 0.2426 S23: 0.6360 REMARK 3 S31: 0.1661 S32: 0.0646 S33: -0.1389 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HOB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 46.183 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 48.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QBJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M CACODYLATE, 2M REMARK 280 AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.86800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.32100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.29200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.32100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.86800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.29200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 210 REMARK 465 SER A 211 REMARK 465 HIS A 212 REMARK 465 MET A 213 REMARK 465 ALA A 214 REMARK 465 SER A 215 REMARK 465 ASN A 216 REMARK 465 GLY B 210 REMARK 465 SER B 211 REMARK 465 HIS B 212 REMARK 465 MET B 213 REMARK 465 ALA B 214 REMARK 465 ALA B 278 REMARK 465 GLY C 210 REMARK 465 SER C 211 REMARK 465 GLY D 210 REMARK 465 SER D 211 REMARK 465 HIS D 212 REMARK 465 MET D 213 REMARK 465 ALA D 214 REMARK 465 SER D 215 REMARK 465 ASN D 216 REMARK 465 PRO D 217 REMARK 465 ILE D 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 215 OG REMARK 470 ASN B 216 CG OD1 ND2 REMARK 470 HIS C 212 CG ND1 CD2 CE1 NE2 REMARK 470 MET C 213 CG SD CE REMARK 470 ARG C 266 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 266 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 270 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 417 O HOH B 425 1.94 REMARK 500 O HOH A 422 O HOH A 442 1.99 REMARK 500 O HOH A 440 O HOH D 338 2.00 REMARK 500 O HOH A 413 O HOH B 409 2.03 REMARK 500 O4 SO4 C 304 O HOH C 463 2.04 REMARK 500 ND1 HIS B 271 O HOH B 443 2.06 REMARK 500 O HOH A 414 O HOH A 423 2.07 REMARK 500 O HOH A 427 O HOH A 444 2.08 REMARK 500 O HOH B 428 O HOH B 432 2.08 REMARK 500 OE1 GLU C 251 O HOH C 455 2.13 REMARK 500 O1 SO4 C 302 O HOH C 464 2.14 REMARK 500 ND1 HIS B 240 O HOH B 441 2.15 REMARK 500 O HOH A 444 O HOH A 448 2.16 REMARK 500 O3 SO4 A 302 O HOH B 443 2.16 REMARK 500 O HOH B 421 O HOH B 440 2.16 REMARK 500 O HOH B 434 O HOH B 437 2.17 REMARK 500 OG SER D 244 O HOH D 339 2.18 REMARK 500 O ASN B 216 NH2 ARG B 254 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1J75 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN ZALPHA OF DLM-1 BOUND REMARK 900 TO Z-DNA REMARK 900 RELATED ID: 1QBJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE ZALPHA Z-DNA COMPLEX REMARK 900 RELATED ID: 1OYI RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE Z-DNA BINDING DOMAIN OF THE VACCINIA REMARK 900 VIRUS GENE E3L DBREF 4HOB A 216 278 UNP A4FTK7 A4FTK7_9VIRU 216 278 DBREF 4HOB B 216 278 UNP A4FTK7 A4FTK7_9VIRU 216 278 DBREF 4HOB C 216 278 UNP A4FTK7 A4FTK7_9VIRU 216 278 DBREF 4HOB D 216 278 UNP A4FTK7 A4FTK7_9VIRU 216 278 SEQADV 4HOB GLY A 210 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER A 211 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB HIS A 212 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB MET A 213 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB ALA A 214 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER A 215 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB GLY B 210 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER B 211 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB HIS B 212 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB MET B 213 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB ALA B 214 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER B 215 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB GLY C 210 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER C 211 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB HIS C 212 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB MET C 213 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB ALA C 214 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER C 215 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB GLY D 210 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER D 211 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB HIS D 212 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB MET D 213 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB ALA D 214 UNP A4FTK7 EXPRESSION TAG SEQADV 4HOB SER D 215 UNP A4FTK7 EXPRESSION TAG SEQRES 1 A 69 GLY SER HIS MET ALA SER ASN PRO ILE SER GLU GLU MET SEQRES 2 A 69 ASN LEU LYS ILE LEU ALA TYR LEU GLY THR LYS GLN GLY SEQRES 3 A 69 ALA LYS ALA VAL HIS ILE ALA GLN SER LEU GLY ALA GLN SEQRES 4 A 69 ARG SER GLU VAL ASN ARG HIS LEU TYR ARG MET SER GLU SEQRES 5 A 69 ASP GLY ARG VAL ARG LYS HIS PRO GLN HIS PRO VAL TRP SEQRES 6 A 69 TYR LEU PRO ALA SEQRES 1 B 69 GLY SER HIS MET ALA SER ASN PRO ILE SER GLU GLU MET SEQRES 2 B 69 ASN LEU LYS ILE LEU ALA TYR LEU GLY THR LYS GLN GLY SEQRES 3 B 69 ALA LYS ALA VAL HIS ILE ALA GLN SER LEU GLY ALA GLN SEQRES 4 B 69 ARG SER GLU VAL ASN ARG HIS LEU TYR ARG MET SER GLU SEQRES 5 B 69 ASP GLY ARG VAL ARG LYS HIS PRO GLN HIS PRO VAL TRP SEQRES 6 B 69 TYR LEU PRO ALA SEQRES 1 C 69 GLY SER HIS MET ALA SER ASN PRO ILE SER GLU GLU MET SEQRES 2 C 69 ASN LEU LYS ILE LEU ALA TYR LEU GLY THR LYS GLN GLY SEQRES 3 C 69 ALA LYS ALA VAL HIS ILE ALA GLN SER LEU GLY ALA GLN SEQRES 4 C 69 ARG SER GLU VAL ASN ARG HIS LEU TYR ARG MET SER GLU SEQRES 5 C 69 ASP GLY ARG VAL ARG LYS HIS PRO GLN HIS PRO VAL TRP SEQRES 6 C 69 TYR LEU PRO ALA SEQRES 1 D 69 GLY SER HIS MET ALA SER ASN PRO ILE SER GLU GLU MET SEQRES 2 D 69 ASN LEU LYS ILE LEU ALA TYR LEU GLY THR LYS GLN GLY SEQRES 3 D 69 ALA LYS ALA VAL HIS ILE ALA GLN SER LEU GLY ALA GLN SEQRES 4 D 69 ARG SER GLU VAL ASN ARG HIS LEU TYR ARG MET SER GLU SEQRES 5 D 69 ASP GLY ARG VAL ARG LYS HIS PRO GLN HIS PRO VAL TRP SEQRES 6 D 69 TYR LEU PRO ALA HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 C 301 5 HET SO4 C 302 5 HET SO4 C 303 5 HET SO4 C 304 5 HET SO4 C 305 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 9(O4 S 2-) FORMUL 14 HOH *204(H2 O) HELIX 1 1 SER A 219 THR A 232 1 14 HELIX 2 2 LYS A 237 GLY A 246 1 10 HELIX 3 3 GLN A 248 ASP A 262 1 15 HELIX 4 4 SER B 219 THR B 232 1 14 HELIX 5 5 LYS B 237 GLY B 246 1 10 HELIX 6 6 GLN B 248 ASP B 262 1 15 HELIX 7 7 SER C 219 THR C 232 1 14 HELIX 8 8 LYS C 237 GLY C 246 1 10 HELIX 9 9 GLN C 248 ASP C 262 1 15 HELIX 10 10 GLU D 220 THR D 232 1 13 HELIX 11 11 LYS D 237 GLY D 246 1 10 HELIX 12 12 GLN D 248 ASP D 262 1 15 SHEET 1 A 2 ARG A 266 HIS A 268 0 SHEET 2 A 2 VAL B 273 TYR B 275 -1 O TYR B 275 N ARG A 266 SHEET 1 B 2 VAL A 273 TYR A 275 0 SHEET 2 B 2 ARG B 266 HIS B 268 -1 O ARG B 266 N TYR A 275 SHEET 1 C 2 ARG C 266 HIS C 268 0 SHEET 2 C 2 VAL D 273 TYR D 275 -1 O TYR D 275 N ARG C 266 SHEET 1 D 2 VAL C 273 TYR C 275 0 SHEET 2 D 2 ARG D 266 HIS D 268 -1 O ARG D 266 N TYR C 275 CISPEP 1 HIS A 268 PRO A 269 0 -5.91 CISPEP 2 HIS B 268 PRO B 269 0 -5.91 CISPEP 3 HIS C 268 PRO C 269 0 -2.66 CISPEP 4 HIS C 268 PRO C 269 0 -2.19 CISPEP 5 HIS D 268 PRO D 269 0 -4.06 SITE 1 AC1 7 HIS A 268 PRO A 269 GLN A 270 HOH A 419 SITE 2 AC1 7 HOH A 425 HOH C 418 LYS D 237 SITE 1 AC2 8 ARG A 249 ASN A 253 TYR A 257 HOH A 403 SITE 2 AC2 8 HOH A 439 LYS B 267 GLN B 270 HOH B 443 SITE 1 AC3 6 HIS B 268 PRO B 269 GLN B 270 HOH B 414 SITE 2 AC3 6 HOH B 433 LYS C 237 SITE 1 AC4 3 LYS B 237 HIS B 240 HIS C 268 SITE 1 AC5 5 HOH A 419 LYS B 237 HIS C 268 PRO C 269 SITE 2 AC5 5 GLN C 270 SITE 1 AC6 9 ARG C 249 ASN C 253 TYR C 257 HOH C 406 SITE 2 AC6 9 HOH C 464 TYR D 257 LYS D 267 HIS D 271 SITE 3 AC6 9 PRO D 272 SITE 1 AC7 9 TYR C 257 LYS C 267 GLN C 270 HIS C 271 SITE 2 AC7 9 PRO C 272 HOH C 421 ASN D 253 TYR D 257 SITE 3 AC7 9 HOH D 306 SITE 1 AC8 5 SER C 219 GLU C 220 GLU C 221 HOH C 463 SITE 2 AC8 5 GLU D 221 SITE 1 AC9 5 GLN B 234 GLY B 235 HIS C 268 TYR D 275 SITE 2 AC9 5 LEU D 276 CRYST1 51.736 54.584 86.642 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019329 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011542 0.00000 MASTER 585 0 9 12 8 0 19 6 0 0 0 24 END