HEADER HYDROLASE 22-OCT-12 4HO7 TITLE CRYSTAL STRUCTURE OF EUKARYOTIC HSLV FROM TRYPANOSOMA BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HSLVU COMPLEX PROTEOLYTIC SUBUNIT, PUTATIVE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 3.4.25.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 999953; SOURCE 4 STRAIN: 927/4 GUTAT10.1; SOURCE 5 GENE: TB11.01.2000; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MITOCHONDRIA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.H.SUNG,S.Y.LEE,H.K.SONG REVDAT 3 28-AUG-13 4HO7 1 JRNL REVDAT 2 31-JUL-13 4HO7 1 JRNL REVDAT 1 10-JUL-13 4HO7 0 JRNL AUTH K.H.SUNG,S.Y.LEE,H.K.SONG JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSES OF THE EUKARYOTIC HEAT JRNL TITL 2 SHOCK LOCUS V (HSLV) FROM TRYPANOSOMA BRUCEI. JRNL REF J.BIOL.CHEM. V. 288 23234 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23818520 JRNL DOI 10.1074/JBC.M113.484832 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 20054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1083 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1443 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.5330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3930 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.543 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3966 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3948 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5358 ; 1.544 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9048 ; 0.982 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 6.903 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;38.507 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 723 ;17.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.988 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4491 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 834 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 173 B 1 173 11088 0.03 0.05 REMARK 3 2 A 1 173 C 1 173 11091 0.03 0.05 REMARK 3 3 B 1 173 C 1 173 11097 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 173 REMARK 3 RESIDUE RANGE : A 200 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0576 30.9478 54.7996 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.1353 REMARK 3 T33: 0.0900 T12: 0.0528 REMARK 3 T13: 0.0021 T23: 0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.6331 L22: 1.9338 REMARK 3 L33: 1.7101 L12: 0.4086 REMARK 3 L13: -0.1237 L23: -0.0225 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: 0.0722 S13: 0.1363 REMARK 3 S21: -0.0026 S22: 0.0618 S23: 0.3934 REMARK 3 S31: -0.1873 S32: -0.2385 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 173 REMARK 3 RESIDUE RANGE : B 200 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2139 11.7943 30.2680 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.2263 REMARK 3 T33: 0.1424 T12: -0.0208 REMARK 3 T13: -0.1315 T23: 0.0390 REMARK 3 L TENSOR REMARK 3 L11: 1.4940 L22: 1.0334 REMARK 3 L33: 1.0701 L12: -0.4565 REMARK 3 L13: 0.0481 L23: 0.2349 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: 0.1518 S13: -0.1170 REMARK 3 S21: -0.3345 S22: 0.0687 S23: 0.3745 REMARK 3 S31: -0.0516 S32: 0.0276 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 173 REMARK 3 RESIDUE RANGE : C 200 C 200 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7597 18.8028 83.2159 REMARK 3 T TENSOR REMARK 3 T11: 0.0976 T22: 0.1872 REMARK 3 T33: 0.1016 T12: 0.0645 REMARK 3 T13: 0.0864 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 1.6603 L22: 1.8953 REMARK 3 L33: 1.6793 L12: 0.0536 REMARK 3 L13: 0.4205 L23: -0.5082 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: -0.2548 S13: 0.0969 REMARK 3 S21: 0.3142 S22: 0.2272 S23: 0.3822 REMARK 3 S31: -0.1469 S32: -0.3077 S33: -0.1846 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21375 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.5, 3.5M REMARK 280 SODIUMFORMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.83650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.53100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.47650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.83650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.53100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.47650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.83650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.53100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.47650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.83650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.53100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.47650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 116.95300 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 116.95300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 313 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 HIS C 174 REMARK 465 HIS C 175 REMARK 465 HIS C 176 REMARK 465 HIS C 177 REMARK 465 HIS C 178 REMARK 465 HIS C 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 173 C O REMARK 470 GLU B 173 C O REMARK 470 GLU C 173 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 154 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG C 154 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 25 -47.13 -136.86 REMARK 500 ASN A 39 -151.95 -165.76 REMARK 500 ASP B 10 31.93 -98.11 REMARK 500 ARG B 25 -28.32 -149.28 REMARK 500 SER B 31 31.05 -140.01 REMARK 500 ASN B 39 -152.31 -164.92 REMARK 500 ARG C 25 -49.70 -137.58 REMARK 500 ASN C 39 -152.17 -164.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 157 O REMARK 620 2 SER C 163 O 87.1 REMARK 620 3 ASP C 160 O 76.9 72.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 157 O REMARK 620 2 ASP B 160 O 76.2 REMARK 620 3 SER B 163 O 84.2 70.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 200 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 157 O REMARK 620 2 ASP A 160 O 75.6 REMARK 620 3 SER A 163 O 80.7 71.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 200 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HNZ RELATED DB: PDB REMARK 900 THE OTHER CRYSTAL FROM FROM SAME PROTEIN. DBREF 4HO7 A 1 173 UNP Q383Q5 Q383Q5_TRYB2 20 192 DBREF 4HO7 B 1 173 UNP Q383Q5 Q383Q5_TRYB2 20 192 DBREF 4HO7 C 1 173 UNP Q383Q5 Q383Q5_TRYB2 20 192 SEQADV 4HO7 GLU A 173 UNP Q383Q5 LYS 192 CONFLICT SEQADV 4HO7 HIS A 174 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS A 175 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS A 176 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS A 177 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS A 178 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS A 179 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 GLU B 173 UNP Q383Q5 LYS 192 CONFLICT SEQADV 4HO7 HIS B 174 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS B 175 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS B 176 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS B 177 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS B 178 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS B 179 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 GLU C 173 UNP Q383Q5 LYS 192 CONFLICT SEQADV 4HO7 HIS C 174 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS C 175 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS C 176 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS C 177 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS C 178 UNP Q383Q5 EXPRESSION TAG SEQADV 4HO7 HIS C 179 UNP Q383Q5 EXPRESSION TAG SEQRES 1 A 179 THR THR ILE LEU SER VAL ARG LYS GLY ASP THR VAL VAL SEQRES 2 A 179 LEU LEU GLY ASP ARG GLN VAL THR LEU GLY GLU ARG ILE SEQRES 3 A 179 VAL ALA LYS SER SER ALA CYS LYS LEU ARG ARG ILE ASN SEQRES 4 A 179 ASP ASP VAL VAL ILE GLY PHE ALA GLY SER THR ALA ASP SEQRES 5 A 179 ALA ILE SER LEU MET GLU LYS LEU GLU ASN LYS ILE GLY SEQRES 6 A 179 GLU PHE PRO ASN GLN LEU THR ARG ALA ALA VAL GLU LEU SEQRES 7 A 179 ALA LYS GLU TRP ARG THR ASP ARG ALA LEU ARG ARG LEU SEQRES 8 A 179 GLU ALA SER LEU ILE VAL CYS SER ALA GLU GLU THR LEU SEQRES 9 A 179 GLU ILE ASP GLY GLN GLY ASN VAL ILE THR PRO GLU ALA SEQRES 10 A 179 ASP GLY ILE VAL ALA ILE GLY SER GLY GLY THR PHE ALA SEQRES 11 A 179 LYS ALA ALA ALA ARG ALA LEU ILE ASP VAL ASP GLY TYR SEQRES 12 A 179 ASP ALA GLU LYS ILE ALA ARG LYS ALA MET ARG ILE ALA SEQRES 13 A 179 THR ASP ILE ASP VAL PHE SER ASN GLU HIS TRP ASP VAL SEQRES 14 A 179 GLU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 179 THR THR ILE LEU SER VAL ARG LYS GLY ASP THR VAL VAL SEQRES 2 B 179 LEU LEU GLY ASP ARG GLN VAL THR LEU GLY GLU ARG ILE SEQRES 3 B 179 VAL ALA LYS SER SER ALA CYS LYS LEU ARG ARG ILE ASN SEQRES 4 B 179 ASP ASP VAL VAL ILE GLY PHE ALA GLY SER THR ALA ASP SEQRES 5 B 179 ALA ILE SER LEU MET GLU LYS LEU GLU ASN LYS ILE GLY SEQRES 6 B 179 GLU PHE PRO ASN GLN LEU THR ARG ALA ALA VAL GLU LEU SEQRES 7 B 179 ALA LYS GLU TRP ARG THR ASP ARG ALA LEU ARG ARG LEU SEQRES 8 B 179 GLU ALA SER LEU ILE VAL CYS SER ALA GLU GLU THR LEU SEQRES 9 B 179 GLU ILE ASP GLY GLN GLY ASN VAL ILE THR PRO GLU ALA SEQRES 10 B 179 ASP GLY ILE VAL ALA ILE GLY SER GLY GLY THR PHE ALA SEQRES 11 B 179 LYS ALA ALA ALA ARG ALA LEU ILE ASP VAL ASP GLY TYR SEQRES 12 B 179 ASP ALA GLU LYS ILE ALA ARG LYS ALA MET ARG ILE ALA SEQRES 13 B 179 THR ASP ILE ASP VAL PHE SER ASN GLU HIS TRP ASP VAL SEQRES 14 B 179 GLU VAL LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 179 THR THR ILE LEU SER VAL ARG LYS GLY ASP THR VAL VAL SEQRES 2 C 179 LEU LEU GLY ASP ARG GLN VAL THR LEU GLY GLU ARG ILE SEQRES 3 C 179 VAL ALA LYS SER SER ALA CYS LYS LEU ARG ARG ILE ASN SEQRES 4 C 179 ASP ASP VAL VAL ILE GLY PHE ALA GLY SER THR ALA ASP SEQRES 5 C 179 ALA ILE SER LEU MET GLU LYS LEU GLU ASN LYS ILE GLY SEQRES 6 C 179 GLU PHE PRO ASN GLN LEU THR ARG ALA ALA VAL GLU LEU SEQRES 7 C 179 ALA LYS GLU TRP ARG THR ASP ARG ALA LEU ARG ARG LEU SEQRES 8 C 179 GLU ALA SER LEU ILE VAL CYS SER ALA GLU GLU THR LEU SEQRES 9 C 179 GLU ILE ASP GLY GLN GLY ASN VAL ILE THR PRO GLU ALA SEQRES 10 C 179 ASP GLY ILE VAL ALA ILE GLY SER GLY GLY THR PHE ALA SEQRES 11 C 179 LYS ALA ALA ALA ARG ALA LEU ILE ASP VAL ASP GLY TYR SEQRES 12 C 179 ASP ALA GLU LYS ILE ALA ARG LYS ALA MET ARG ILE ALA SEQRES 13 C 179 THR ASP ILE ASP VAL PHE SER ASN GLU HIS TRP ASP VAL SEQRES 14 C 179 GLU VAL LEU GLU HIS HIS HIS HIS HIS HIS HET MG A 200 1 HET MG B 200 1 HET MG C 200 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *31(H2 O) HELIX 1 1 SER A 49 PHE A 67 1 19 HELIX 2 2 GLN A 70 ASP A 85 1 16 HELIX 3 3 ASP A 85 ARG A 90 1 6 HELIX 4 4 GLY A 126 ILE A 138 1 13 HELIX 5 5 ASP A 144 ASP A 160 1 17 HELIX 6 6 SER B 49 PHE B 67 1 19 HELIX 7 7 GLN B 70 ASP B 85 1 16 HELIX 8 8 ASP B 85 ARG B 90 1 6 HELIX 9 9 GLY B 126 ILE B 138 1 13 HELIX 10 10 ASP B 144 ASP B 160 1 17 HELIX 11 11 SER C 49 PHE C 67 1 19 HELIX 12 12 GLN C 70 ASP C 85 1 16 HELIX 13 13 ASP C 85 ARG C 90 1 6 HELIX 14 14 GLY C 126 ILE C 138 1 13 HELIX 15 15 ASP C 144 ASP C 160 1 17 SHEET 1 A 4 ILE A 120 ILE A 123 0 SHEET 2 A 4 ILE A 3 LYS A 8 -1 N SER A 5 O VAL A 121 SHEET 3 A 4 THR A 11 ASP A 17 -1 O LEU A 15 N LEU A 4 SHEET 4 A 4 TRP A 167 LEU A 172 -1 O GLU A 170 N LEU A 14 SHEET 1 B 2 VAL A 20 LEU A 22 0 SHEET 2 B 2 ILE A 26 LYS A 29 -1 O ILE A 26 N LEU A 22 SHEET 1 C 5 LEU A 35 ARG A 37 0 SHEET 2 C 5 VAL A 42 GLY A 48 -1 O ILE A 44 N ARG A 36 SHEET 3 C 5 ALA A 93 SER A 99 -1 O CYS A 98 N VAL A 43 SHEET 4 C 5 THR A 103 ASP A 107 -1 O LEU A 104 N VAL A 97 SHEET 5 C 5 VAL A 112 ILE A 113 -1 O ILE A 113 N GLU A 105 SHEET 1 D 4 ILE B 120 ILE B 123 0 SHEET 2 D 4 ILE B 3 LYS B 8 -1 N SER B 5 O VAL B 121 SHEET 3 D 4 THR B 11 ASP B 17 -1 O LEU B 15 N LEU B 4 SHEET 4 D 4 TRP B 167 LEU B 172 -1 O GLU B 170 N LEU B 14 SHEET 1 E 2 VAL B 20 LEU B 22 0 SHEET 2 E 2 ILE B 26 LYS B 29 -1 O ILE B 26 N LEU B 22 SHEET 1 F 5 LEU B 35 ARG B 37 0 SHEET 2 F 5 VAL B 42 GLY B 48 -1 O ILE B 44 N ARG B 36 SHEET 3 F 5 ALA B 93 SER B 99 -1 O CYS B 98 N VAL B 43 SHEET 4 F 5 THR B 103 ASP B 107 -1 O LEU B 104 N VAL B 97 SHEET 5 F 5 VAL B 112 ILE B 113 -1 O ILE B 113 N GLU B 105 SHEET 1 G 4 ILE C 120 ILE C 123 0 SHEET 2 G 4 ILE C 3 LYS C 8 -1 N SER C 5 O VAL C 121 SHEET 3 G 4 THR C 11 ASP C 17 -1 O LEU C 15 N LEU C 4 SHEET 4 G 4 TRP C 167 LEU C 172 -1 O GLU C 170 N LEU C 14 SHEET 1 H 2 VAL C 20 LEU C 22 0 SHEET 2 H 2 ILE C 26 LYS C 29 -1 O ILE C 26 N LEU C 22 SHEET 1 I 5 LEU C 35 ARG C 37 0 SHEET 2 I 5 VAL C 42 GLY C 48 -1 O ILE C 44 N ARG C 36 SHEET 3 I 5 ALA C 93 SER C 99 -1 O CYS C 98 N VAL C 43 SHEET 4 I 5 THR C 103 ASP C 107 -1 O LEU C 104 N VAL C 97 SHEET 5 I 5 VAL C 112 ILE C 113 -1 O ILE C 113 N GLU C 105 LINK O THR C 157 MG MG C 200 1555 1555 2.32 LINK O THR B 157 MG MG B 200 1555 1555 2.36 LINK O THR A 157 MG MG A 200 1555 1555 2.48 LINK O ASP A 160 MG MG A 200 1555 1555 2.50 LINK O SER C 163 MG MG C 200 1555 1555 2.52 LINK O ASP C 160 MG MG C 200 1555 1555 2.57 LINK O ASP B 160 MG MG B 200 1555 1555 2.59 LINK O SER B 163 MG MG B 200 1555 1555 2.60 LINK O SER A 163 MG MG A 200 1555 1555 2.68 SITE 1 AC1 3 THR A 157 ASP A 160 SER A 163 SITE 1 AC2 3 THR B 157 ASP B 160 SER B 163 SITE 1 AC3 3 THR C 157 ASP C 160 SER C 163 CRYST1 105.673 111.062 116.953 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008550 0.00000 MASTER 457 0 3 15 33 0 3 6 0 0 0 42 END