HEADER DNA BINDING PROTEIN/DNA 17-OCT-12 4HLY TITLE THE COMPLEX CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF VIRF-1 FROM TITLE 2 THE ONCOGENIC KSHV WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: K9; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA BINDING DOMAIN, UNP RESIDUES 88-196; COMPND 5 SYNONYM: LATENT VIRAL INTERFERON REGULATORY FACTOR, LYTIC VIRAL COMPND 6 INTERFERON REGULATORY FACTOR, ORF K9, VIRF-1 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*CP*GP*TP*CP*GP*AP*GP*AP*CP*GP*C)-3'; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 8; SOURCE 3 ORGANISM_COMMON: HHV-8; SOURCE 4 ORGANISM_TAXID: 37296; SOURCE 5 GENE: ORF K9, VIRF, VIRF-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3-ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HELIX-TURN-HELIX, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HEW,R.VENKATACHALAM REVDAT 4 14-SEP-16 4HLY 1 REMARK REVDAT 3 07-SEP-16 4HLY 1 REMARK SOURCE REVDAT 2 05-FEB-14 4HLY 1 JRNL REVDAT 1 13-MAR-13 4HLY 0 JRNL AUTH K.HEW,S.L.DAHLROTH,R.VENKATACHALAM,F.NASERTORABI,B.T.LIM, JRNL AUTH 2 T.CORNVIK,P.NORDLUND JRNL TITL THE CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF VIRF-1 JRNL TITL 2 FROM THE ONCOGENIC KSHV REVEALS A CONSERVED FOLD FOR DNA JRNL TITL 3 BINDING AND REINFORCES ITS ROLE AS A TRANSCRIPTION FACTOR. JRNL REF NUCLEIC ACIDS RES. V. 41 4295 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23435230 JRNL DOI 10.1093/NAR/GKT082 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 37481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2514 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1734 REMARK 3 NUCLEIC ACID ATOMS : 490 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.03000 REMARK 3 B22 (A**2) : -5.23000 REMARK 3 B33 (A**2) : -1.80000 REMARK 3 B12 (A**2) : 7.63000 REMARK 3 B13 (A**2) : -4.00000 REMARK 3 B23 (A**2) : -0.42000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.019 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.019 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.216 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2368 ; 0.005 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3292 ; 1.107 ; 1.739 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 220 ; 4.950 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;25.754 ;20.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;13.224 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.118 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1681 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.598 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4HLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13C1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96722 REMARK 200 MONOCHROMATOR : RH COATED MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.50700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE CITRATE PH 4.2, 40% PEG REMARK 280 300, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 1.28815 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 -1.90676 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 48.50745 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 21.10044 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -34.41201 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 109 REMARK 465 PRO A 110 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 109 REMARK 465 PRO B 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 76 O6 DG D 11 1645 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 4 C1' - O4' - C4' ANGL. DEV. = -12.2 DEGREES REMARK 500 DT C 4 N1 - C1' - C2' ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 235 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A 256 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH B 222 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH B 241 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B 251 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH B 253 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH B 255 DISTANCE = 7.35 ANGSTROMS REMARK 525 HOH B 257 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 267 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH B 272 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH C 133 DISTANCE = 6.25 ANGSTROMS DBREF 4HLY A 2 110 UNP Q77Q82 Q77Q82_HHV8 88 196 DBREF 4HLY B 2 110 UNP Q77Q82 Q77Q82_HHV8 88 196 DBREF 4HLY C 1 12 PDB 4HLY 4HLY 1 12 DBREF 4HLY D 1 12 PDB 4HLY 4HLY 1 12 SEQADV 4HLY MET A -21 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS A -20 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS A -19 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS A -18 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS A -17 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS A -16 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS A -15 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY SER A -14 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY SER A -13 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLY A -12 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY VAL A -11 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY ASP A -10 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY LEU A -9 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLY A -8 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY THR A -7 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLU A -6 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY ASN A -5 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY LEU A -4 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY TYR A -3 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY PHE A -2 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLN A -1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY SER A 0 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY MET A 1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY MET B -21 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS B -20 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS B -19 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS B -18 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS B -17 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS B -16 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY HIS B -15 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY SER B -14 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY SER B -13 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLY B -12 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY VAL B -11 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY ASP B -10 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY LEU B -9 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLY B -8 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY THR B -7 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLU B -6 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY ASN B -5 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY LEU B -4 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY TYR B -3 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY PHE B -2 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY GLN B -1 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY SER B 0 UNP Q77Q82 EXPRESSION TAG SEQADV 4HLY MET B 1 UNP Q77Q82 EXPRESSION TAG SEQRES 1 A 132 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 132 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS ALA SEQRES 3 A 132 SER ILE LYS ASP TRP ILE VAL CYS GLN VAL ASN SER GLY SEQRES 4 A 132 LYS PHE PRO GLY VAL GLU TRP GLU ASP GLU GLU ARG THR SEQRES 5 A 132 ARG PHE ARG ILE PRO VAL THR PRO LEU ALA ASP PRO CYS SEQRES 6 A 132 PHE GLU TRP ARG ARG ASP GLY GLU LEU GLY VAL VAL TYR SEQRES 7 A 132 ILE ARG GLU ARG GLY ASN MET PRO VAL ASP ALA SER PHE SEQRES 8 A 132 LYS GLY THR ARG GLY ARG ARG ARG MET LEU ALA ALA LEU SEQRES 9 A 132 ARG ARG THR ARG GLY LEU GLN GLU ILE GLY LYS GLY ILE SEQRES 10 A 132 SER GLN ASP GLY HIS HIS PHE LEU VAL PHE ARG VAL ARG SEQRES 11 A 132 LYS PRO SEQRES 1 B 132 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 132 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS ALA SEQRES 3 B 132 SER ILE LYS ASP TRP ILE VAL CYS GLN VAL ASN SER GLY SEQRES 4 B 132 LYS PHE PRO GLY VAL GLU TRP GLU ASP GLU GLU ARG THR SEQRES 5 B 132 ARG PHE ARG ILE PRO VAL THR PRO LEU ALA ASP PRO CYS SEQRES 6 B 132 PHE GLU TRP ARG ARG ASP GLY GLU LEU GLY VAL VAL TYR SEQRES 7 B 132 ILE ARG GLU ARG GLY ASN MET PRO VAL ASP ALA SER PHE SEQRES 8 B 132 LYS GLY THR ARG GLY ARG ARG ARG MET LEU ALA ALA LEU SEQRES 9 B 132 ARG ARG THR ARG GLY LEU GLN GLU ILE GLY LYS GLY ILE SEQRES 10 B 132 SER GLN ASP GLY HIS HIS PHE LEU VAL PHE ARG VAL ARG SEQRES 11 B 132 LYS PRO SEQRES 1 C 12 DG DC DG DT DC DG DA DG DA DC DG DC SEQRES 1 D 12 DG DC DG DT DC DG DA DG DA DC DG DC FORMUL 5 HOH *232(H2 O) HELIX 1 1 SER A 5 GLY A 17 1 13 HELIX 2 2 GLU A 45 GLY A 50 1 6 HELIX 3 3 GLY A 50 ARG A 60 1 11 HELIX 4 4 ASP A 66 LYS A 70 5 5 HELIX 5 5 THR A 72 ARG A 84 1 13 HELIX 6 6 SER B 5 GLY B 17 1 13 HELIX 7 7 GLU B 45 GLY B 50 1 6 HELIX 8 8 GLY B 50 GLY B 61 1 12 HELIX 9 9 ASP B 66 LYS B 70 5 5 HELIX 10 10 THR B 72 THR B 85 1 14 SHEET 1 A 4 GLU A 23 TRP A 24 0 SHEET 2 A 4 ARG A 31 PRO A 35 -1 O ARG A 33 N GLU A 23 SHEET 3 A 4 HIS A 101 VAL A 107 -1 O LEU A 103 N ILE A 34 SHEET 4 A 4 LEU A 88 ILE A 95 -1 N ILE A 91 O VAL A 104 SHEET 1 B 4 GLU B 23 TRP B 24 0 SHEET 2 B 4 ARG B 31 PRO B 35 -1 O ARG B 33 N GLU B 23 SHEET 3 B 4 HIS B 101 VAL B 107 -1 O PHE B 105 N PHE B 32 SHEET 4 B 4 LEU B 88 ILE B 95 -1 N ILE B 91 O VAL B 104 CRYST1 38.536 38.577 48.562 91.32 88.48 63.13 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025950 -0.013149 -0.001206 0.00000 SCALE2 0.000000 0.029060 0.001143 0.00000 SCALE3 0.000000 0.000000 0.020615 0.00000 MASTER 359 0 0 10 8 0 0 6 0 0 0 24 END