HEADER DNA/ANTIBIOTIC 12-OCT-12 4HIV TITLE STRUCTURE OF ACTINOMYCIN D D(ATGCGGCAT) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*TP*GP*CP*GP*GP*CP*AP*T)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ACTINOMYCIN D; COMPND 7 CHAIN: C, D SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: STREPTOMYCES ANTIBIOTICUS; SOURCE 5 ORGANISM_TAXID: 1890 KEYWDS DOUBLE HELIX DNA, NUCLEOTIDE FLIPPING-OUT, SHARP KINK, LEFT-HANDED KEYWDS 2 TWIST, CGG TRIPLEAT REPEAT, NEUROLOGICAL DISEASE, DNA-ANTIBIOTIC KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.LO,W.H.TSENG,M.H.HOU REVDAT 2 15-MAY-13 4HIV 1 DBREF JRNL LINK MODRES REVDAT 2 2 1 REMARK SOURCE REVDAT 1 08-MAY-13 4HIV 0 JRNL AUTH Y.S.LO,W.H.TSENG,C.Y.CHUANG,M.H.HOU JRNL TITL THE STRUCTURAL BASIS OF ACTINOMYCIN D-BINDING INDUCES JRNL TITL 2 NUCLEOTIDE FLIPPING OUT, A SHARP BEND AND A LEFT-HANDED JRNL TITL 3 TWIST IN CGG TRIPLET REPEATS. JRNL REF NUCLEIC ACIDS RES. V. 41 4284 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23408860 JRNL DOI 10.1093/NAR/GKT084 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 4378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 181 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 7.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE : 0.0900 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 4 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.045 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 180 REMARK 3 NUCLEIC ACID ATOMS : 366 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.29900 REMARK 3 B22 (A**2) : 1.29900 REMARK 3 B33 (A**2) : -2.59800 REMARK 3 B12 (A**2) : 1.15100 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.41 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HIV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075520. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9062 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4378 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 54.2050 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40MM SODIUM CACODYLATE, 3MM MAGNESIUM REMARK 280 CHLORIDE, 5MM CALCIUM CHLORIDE, 10MM SPERMINE, 8% MPD, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.18533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.59267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.88900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.29633 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.48167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.18533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 16.59267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 8.29633 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.88900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.48167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 161 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE REMARK 400 ACTINOMYCIN FAMILY. REMARK 400 HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) REMARK 400 REMARK 400 THE ACTINOMYCIN D IS POLYPEPTIDE, A MEMBER OF ANTIBIOTIC CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: ACTINOMYCIN D REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED REMARK 400 BY THE CHROMOPHORE (PXZ) REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 9 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO C 9 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 DVA C 2 -132.39 -46.20 REMARK 500 DVA C 8 -133.96 4.77 REMARK 500 DVA D 8 -108.93 46.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA B 17 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 DVA C 2 11.50 REMARK 500 DVA C 8 10.00 REMARK 500 PRO D 9 -10.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 104 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A 108 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH A 109 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH A 110 DISTANCE = 11.50 ANGSTROMS REMARK 525 HOH A 111 DISTANCE = 12.84 ANGSTROMS REMARK 525 HOH A 112 DISTANCE = 12.78 ANGSTROMS REMARK 525 HOH A 113 DISTANCE = 11.57 ANGSTROMS REMARK 525 HOH A 114 DISTANCE = 9.66 ANGSTROMS REMARK 525 HOH A 116 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A 117 DISTANCE = 10.25 ANGSTROMS REMARK 525 HOH A 118 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 120 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 122 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 123 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 125 DISTANCE = 10.62 ANGSTROMS REMARK 525 HOH A 126 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 129 DISTANCE = 10.93 ANGSTROMS REMARK 525 HOH A 131 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH A 133 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH A 134 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH B 110 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH B 111 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH B 112 DISTANCE = 12.70 ANGSTROMS REMARK 525 HOH B 117 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH B 118 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH B 123 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH C 102 DISTANCE = 7.38 ANGSTROMS REMARK 525 HOH C 103 DISTANCE = 8.83 ANGSTROMS REMARK 525 HOH C 104 DISTANCE = 5.20 ANGSTROMS REMARK 525 HOH C 105 DISTANCE = 16.91 ANGSTROMS REMARK 525 HOH C 108 DISTANCE = 11.31 ANGSTROMS REMARK 525 HOH C 109 DISTANCE = 17.37 ANGSTROMS REMARK 525 HOH C 111 DISTANCE = 15.77 ANGSTROMS REMARK 525 HOH C 112 DISTANCE = 20.87 ANGSTROMS REMARK 525 HOH C 113 DISTANCE = 18.86 ANGSTROMS REMARK 525 HOH C 114 DISTANCE = 18.17 ANGSTROMS REMARK 525 HOH C 115 DISTANCE = 14.59 ANGSTROMS REMARK 525 HOH C 116 DISTANCE = 25.47 ANGSTROMS REMARK 525 HOH C 117 DISTANCE = 20.90 ANGSTROMS REMARK 525 HOH C 118 DISTANCE = 11.84 ANGSTROMS REMARK 525 HOH C 119 DISTANCE = 10.57 ANGSTROMS REMARK 525 HOH C 120 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH C 121 DISTANCE = 14.84 ANGSTROMS REMARK 525 HOH C 122 DISTANCE = 15.40 ANGSTROMS REMARK 525 HOH C 123 DISTANCE = 18.26 ANGSTROMS REMARK 525 HOH C 124 DISTANCE = 8.95 ANGSTROMS REMARK 525 HOH C 125 DISTANCE = 14.32 ANGSTROMS REMARK 525 HOH C 126 DISTANCE = 11.16 ANGSTROMS REMARK 525 HOH C 127 DISTANCE = 11.45 ANGSTROMS REMARK 525 HOH C 128 DISTANCE = 23.86 ANGSTROMS REMARK 525 HOH C 129 DISTANCE = 9.69 ANGSTROMS REMARK 525 HOH C 130 DISTANCE = 24.91 ANGSTROMS REMARK 525 HOH C 131 DISTANCE = 14.07 ANGSTROMS REMARK 525 HOH C 132 DISTANCE = 17.33 ANGSTROMS REMARK 525 HOH C 133 DISTANCE = 20.99 ANGSTROMS REMARK 525 HOH C 134 DISTANCE = 13.50 ANGSTROMS REMARK 525 HOH C 135 DISTANCE = 26.61 ANGSTROMS REMARK 525 HOH C 136 DISTANCE = 21.54 ANGSTROMS REMARK 525 HOH C 137 DISTANCE = 17.00 ANGSTROMS REMARK 525 HOH C 138 DISTANCE = 25.34 ANGSTROMS REMARK 525 HOH C 139 DISTANCE = 21.21 ANGSTROMS REMARK 525 HOH C 140 DISTANCE = 21.22 ANGSTROMS REMARK 525 HOH C 141 DISTANCE = 17.87 ANGSTROMS REMARK 525 HOH C 143 DISTANCE = 24.72 ANGSTROMS REMARK 525 HOH C 144 DISTANCE = 15.81 ANGSTROMS REMARK 525 HOH C 145 DISTANCE = 26.17 ANGSTROMS REMARK 525 HOH C 146 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH C 147 DISTANCE = 20.52 ANGSTROMS REMARK 525 HOH C 148 DISTANCE = 21.42 ANGSTROMS REMARK 525 HOH C 149 DISTANCE = 27.22 ANGSTROMS REMARK 525 HOH C 150 DISTANCE = 20.13 ANGSTROMS REMARK 525 HOH C 151 DISTANCE = 20.99 ANGSTROMS REMARK 525 HOH C 152 DISTANCE = 13.59 ANGSTROMS REMARK 525 HOH C 153 DISTANCE = 23.69 ANGSTROMS REMARK 525 HOH C 154 DISTANCE = 10.95 ANGSTROMS REMARK 525 HOH C 155 DISTANCE = 30.71 ANGSTROMS REMARK 525 HOH C 156 DISTANCE = 15.56 ANGSTROMS REMARK 525 HOH C 157 DISTANCE = 15.62 ANGSTROMS REMARK 525 HOH C 158 DISTANCE = 12.97 ANGSTROMS REMARK 525 HOH C 159 DISTANCE = 10.78 ANGSTROMS REMARK 525 HOH C 160 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH C 161 DISTANCE = 27.82 ANGSTROMS REMARK 525 HOH C 162 DISTANCE = 13.69 ANGSTROMS REMARK 525 HOH C 163 DISTANCE = 23.67 ANGSTROMS REMARK 525 HOH C 164 DISTANCE = 17.96 ANGSTROMS REMARK 525 HOH C 165 DISTANCE = 20.59 ANGSTROMS REMARK 525 HOH C 166 DISTANCE = 23.08 ANGSTROMS REMARK 525 HOH C 167 DISTANCE = 21.10 ANGSTROMS REMARK 525 HOH C 168 DISTANCE = 22.73 ANGSTROMS REMARK 525 HOH C 169 DISTANCE = 17.98 ANGSTROMS REMARK 525 HOH C 170 DISTANCE = 16.37 ANGSTROMS REMARK 525 HOH C 171 DISTANCE = 12.33 ANGSTROMS REMARK 525 HOH C 172 DISTANCE = 5.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF ACTINOMYCIN D REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF ACTINOMYCIN D DBREF 4HIV A 1 9 PDB 4HIV 4HIV 1 9 DBREF 4HIV B 10 18 PDB 4HIV 4HIV 10 18 DBREF 4HIV C 1 11 NOR NOR00228 NOR00228 1 11 DBREF 4HIV D 1 11 NOR NOR00228 NOR00228 1 11 SEQRES 1 A 9 DA DT DG DC DG DG DC DA DT SEQRES 1 B 9 DA DT DG DC DG DG DC DA DT SEQRES 1 C 11 THR DVA PRO SAR MVA PXZ THR DVA PRO SAR MVA SEQRES 1 D 11 THR DVA PRO SAR MVA PXZ THR DVA PRO SAR MVA HET DVA C 2 7 HET SAR C 4 5 HET MVA C 5 8 HET PXZ C 6 22 HET DVA C 8 7 HET SAR C 10 5 HET MVA C 11 8 HET DVA D 2 7 HET SAR D 4 5 HET MVA D 5 8 HET PXZ D 6 22 HET DVA D 8 7 HET SAR D 10 5 HET MVA D 11 8 HETNAM DVA D-VALINE HETNAM SAR SARCOSINE HETNAM MVA N-METHYLVALINE HETNAM PXZ 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO- HETNAM 2 PXZ PHENOXAZIN-3-ONE HETSYN PXZ PHENOXAZINE FORMUL 3 DVA 4(C5 H11 N O2) FORMUL 3 SAR 4(C3 H7 N O2) FORMUL 3 MVA 4(C6 H13 N O2) FORMUL 3 PXZ 2(C16 H12 N2 O4) FORMUL 5 HOH *133(H2 O) LINK C THR C 1 N DVA C 2 1555 1555 1.40 LINK OG1 THR C 1 C MVA C 5 1555 1555 1.36 LINK N THR C 1 C PXZ C 6 1555 1555 1.34 LINK C DVA C 2 N PRO C 3 1555 1555 1.33 LINK C PRO C 3 N SAR C 4 1555 1555 1.34 LINK C SAR C 4 N MVA C 5 1555 1555 1.34 LINK C' PXZ C 6 N THR C 7 1555 1555 1.34 LINK C THR C 7 N DVA C 8 1555 1555 1.40 LINK OG1 THR C 7 C MVA C 11 1555 1555 1.36 LINK C DVA C 8 N PRO C 9 1555 1555 1.33 LINK C PRO C 9 N SAR C 10 1555 1555 1.34 LINK C SAR C 10 N MVA C 11 1555 1555 1.34 LINK C THR D 1 N DVA D 2 1555 1555 1.40 LINK OG1 THR D 1 C MVA D 5 1555 1555 1.36 LINK N THR D 1 C PXZ D 6 1555 1555 1.34 LINK C DVA D 2 N PRO D 3 1555 1555 1.33 LINK C PRO D 3 N SAR D 4 1555 1555 1.34 LINK C SAR D 4 N MVA D 5 1555 1555 1.34 LINK C' PXZ D 6 N THR D 7 1555 1555 1.34 LINK OG1 THR D 7 C MVA D 11 1555 1555 1.36 LINK C THR D 7 N DVA D 8 1555 1555 1.40 LINK C DVA D 8 N PRO D 9 1555 1555 1.33 LINK C PRO D 9 N SAR D 10 1555 1555 1.34 LINK C SAR D 10 N MVA D 11 1555 1555 1.34 CISPEP 1 PRO C 3 SAR C 4 0 0.49 CISPEP 2 PRO C 9 SAR C 10 0 1.19 CISPEP 3 DVA D 2 PRO D 3 0 0.84 CISPEP 4 PRO D 3 SAR D 4 0 0.08 CISPEP 5 DVA D 8 PRO D 9 0 1.75 CISPEP 6 PRO D 9 SAR D 10 0 1.71 SITE 1 AC1 10 DT A 2 DG A 3 DC A 4 DG B 14 SITE 2 AC1 10 DG B 15 DC B 16 DA B 17 DT B 18 SITE 3 AC1 10 SAR D 4 MVA D 5 SITE 1 AC2 11 DC A 4 DG A 5 DG A 6 DC A 7 SITE 2 AC2 11 DA A 8 DT B 11 DG B 12 DC B 13 SITE 3 AC2 11 DVA C 2 PRO C 9 SAR C 10 CRYST1 86.936 86.936 49.778 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011503 0.006641 0.000000 0.00000 SCALE2 0.000000 0.013282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020089 0.00000 MASTER 450 0 14 0 0 0 6 6 0 0 0 4 END