HEADER HYDROLASE 05-OCT-12 4HFQ TITLE CRYSTAL STRUCTURE OF UDP-X DIPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP1669, SP_1669; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-24A KEYWDS UDP-SUGAR DIPHOSPHATASE, NUDIX, HYDROLASE, RNA EXONUCLEASE, KEYWDS 2 PYROPHOSPHATASE, MUR PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR K.C.DUONG-LY,L.M.AMZEL,S.B.GABELLI REVDAT 1 07-AUG-13 4HFQ 0 JRNL AUTH K.C.DUONG-LY,H.N.WOO,C.A.DUNN,W.XU,A.BABIC,M.J.BESSMAN, JRNL AUTH 2 L.M.AMZEL,S.B.GABELLI JRNL TITL A UDP-X DIPHOSPHATASE FROM STREPTOCOCCUS PNEUMONIAE JRNL TITL 2 HYDROLYZES PRECURSORS OF PEPTIDOGLYCAN BIOSYNTHESIS. JRNL REF PLOS ONE V. 8 64241 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23691178 JRNL DOI 10.1371/JOURNAL.PONE.0064241 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 84088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3756 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5063 ; 1.359 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;33.287 ;25.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;11.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.709 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2837 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : KOHZU HLD-4 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 67.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, LI2SO4, PEG-3350, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.56800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.13600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: / REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 137 67.49 -157.23 REMARK 500 LEU A 153 -127.86 -113.02 REMARK 500 GLN B 137 64.03 -155.91 REMARK 500 LEU B 153 -130.53 -112.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 313 DBREF 4HFQ A 1 203 UNP Q97PF7 Q97PF7_STRPN 1 203 DBREF 4HFQ B 1 203 UNP Q97PF7 Q97PF7_STRPN 1 203 SEQRES 1 A 203 MET LYS THR SER ASP PHE VAL LYS TYR LEU GLN ARG MET SEQRES 2 A 203 ILE ALA ILE THR ASP THR GLY LEU THR PHE THR LYS ASP SEQRES 3 A 203 PRO PHE ASP ARG GLU ARG TYR GLU ASP LEU ARG SER LEU SEQRES 4 A 203 LEU SER GLU MET LEU ASN GLN ALA SER ASP LEU ASP SER SEQRES 5 A 203 GLU GLU VAL ALA GLU VAL LEU LYS PRO THR SER ALA TYR SEQRES 6 A 203 ALA THR PRO LEU MET ASP VAL ARG ALA TRP ILE VAL GLU SEQRES 7 A 203 ASP GLU LYS ILE CYS LEU VAL ARG GLY GLN GLY GLU ASP SEQRES 8 A 203 SER TRP ALA LEU PRO GLY GLY PHE GLY GLU VAL GLY TYR SEQRES 9 A 203 SER PRO THR GLU ASN ILE LEU LYS GLU ILE GLU GLU GLU SEQRES 10 A 203 THR GLY PHE LYS ALA LYS VAL GLU ARG LEU LEU ALA VAL SEQRES 11 A 203 PHE ASP THR ASN ARG PHE GLN LEU GLN SER LYS GLN TYR SEQRES 12 A 203 THR LYS PHE VAL PHE GLY CYS LYS LEU LEU ASP GLY GLN SEQRES 13 A 203 PHE GLN GLU ASN GLN GLU ILE ALA ASP LEU GLN PHE PHE SEQRES 14 A 203 ALA ILE ASP GLN LEU PRO ASN LEU SER GLU LYS ARG ILE SEQRES 15 A 203 THR LYS GLU GLN ILE GLU LEU LEU TRP GLN VAL TYR GLN SEQRES 16 A 203 GLY HIS ARG GLY GLN TYR LEU ASP SEQRES 1 B 203 MET LYS THR SER ASP PHE VAL LYS TYR LEU GLN ARG MET SEQRES 2 B 203 ILE ALA ILE THR ASP THR GLY LEU THR PHE THR LYS ASP SEQRES 3 B 203 PRO PHE ASP ARG GLU ARG TYR GLU ASP LEU ARG SER LEU SEQRES 4 B 203 LEU SER GLU MET LEU ASN GLN ALA SER ASP LEU ASP SER SEQRES 5 B 203 GLU GLU VAL ALA GLU VAL LEU LYS PRO THR SER ALA TYR SEQRES 6 B 203 ALA THR PRO LEU MET ASP VAL ARG ALA TRP ILE VAL GLU SEQRES 7 B 203 ASP GLU LYS ILE CYS LEU VAL ARG GLY GLN GLY GLU ASP SEQRES 8 B 203 SER TRP ALA LEU PRO GLY GLY PHE GLY GLU VAL GLY TYR SEQRES 9 B 203 SER PRO THR GLU ASN ILE LEU LYS GLU ILE GLU GLU GLU SEQRES 10 B 203 THR GLY PHE LYS ALA LYS VAL GLU ARG LEU LEU ALA VAL SEQRES 11 B 203 PHE ASP THR ASN ARG PHE GLN LEU GLN SER LYS GLN TYR SEQRES 12 B 203 THR LYS PHE VAL PHE GLY CYS LYS LEU LEU ASP GLY GLN SEQRES 13 B 203 PHE GLN GLU ASN GLN GLU ILE ALA ASP LEU GLN PHE PHE SEQRES 14 B 203 ALA ILE ASP GLN LEU PRO ASN LEU SER GLU LYS ARG ILE SEQRES 15 B 203 THR LYS GLU GLN ILE GLU LEU LEU TRP GLN VAL TYR GLN SEQRES 16 B 203 GLY HIS ARG GLY GLN TYR LEU ASP HET EDO A 301 4 HET EDO A 302 4 HET TRS A 303 8 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET PEG A 307 7 HET EDO A 308 4 HET GOL A 309 6 HET PEG A 310 7 HET SO4 A 311 5 HET EDO A 312 4 HET PGE A 313 10 HET GOL A 314 6 HET GOL A 315 6 HET PEG A 316 7 HET EDO A 317 4 HET SO4 B 301 5 HET EDO B 302 4 HET GOL B 303 6 HET GOL B 304 6 HET TRS B 305 8 HET EDO B 306 4 HET TRS B 307 8 HET GOL B 308 6 HET EDO B 309 4 HET EDO B 310 4 HET EDO B 311 4 HET EDO B 312 4 HET PEG B 313 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 11(C2 H6 O2) FORMUL 5 TRS 3(C4 H12 N O3 1+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 9 PEG 4(C4 H10 O3) FORMUL 11 GOL 6(C3 H8 O3) FORMUL 15 PGE C6 H14 O4 FORMUL 33 HOH *509(H2 O) HELIX 1 1 LYS A 2 THR A 24 1 23 HELIX 2 2 ASP A 26 SER A 48 1 23 HELIX 3 3 ASP A 51 LYS A 60 1 10 HELIX 4 4 SER A 105 GLY A 119 1 15 HELIX 5 5 THR A 133 GLN A 137 1 5 HELIX 6 6 THR A 183 GLN A 195 1 13 HELIX 7 7 LYS B 2 THR B 24 1 23 HELIX 8 8 ASP B 26 GLN B 46 1 21 HELIX 9 9 ASP B 51 LYS B 60 1 10 HELIX 10 10 SER B 105 GLY B 119 1 15 HELIX 11 11 THR B 133 GLN B 137 1 5 HELIX 12 12 ALA B 170 LEU B 174 5 5 HELIX 13 13 THR B 183 GLN B 195 1 13 SHEET 1 A 5 GLY A 97 PHE A 99 0 SHEET 2 A 5 LEU A 69 TRP A 75 -1 N VAL A 72 O GLY A 98 SHEET 3 A 5 TYR A 143 GLY A 155 1 O PHE A 148 N TRP A 75 SHEET 4 A 5 PHE A 120 ASP A 132 -1 N PHE A 131 O LYS A 145 SHEET 5 A 5 TYR A 201 LEU A 202 1 O TYR A 201 N VAL A 130 SHEET 1 B 3 VAL A 77 GLU A 78 0 SHEET 2 B 3 LYS A 81 GLY A 87 -1 O LYS A 81 N GLU A 78 SHEET 3 B 3 TRP A 93 ALA A 94 -1 O ALA A 94 N VAL A 85 SHEET 1 C 3 VAL A 77 GLU A 78 0 SHEET 2 C 3 LYS A 81 GLY A 87 -1 O LYS A 81 N GLU A 78 SHEET 3 C 3 ILE A 163 ALA A 170 -1 O PHE A 169 N ILE A 82 SHEET 1 D 5 GLY B 97 PHE B 99 0 SHEET 2 D 5 LEU B 69 TRP B 75 -1 N VAL B 72 O GLY B 98 SHEET 3 D 5 TYR B 143 GLY B 155 1 O PHE B 148 N TRP B 75 SHEET 4 D 5 PHE B 120 ASP B 132 -1 N LYS B 121 O LEU B 153 SHEET 5 D 5 TYR B 201 LEU B 202 1 O TYR B 201 N VAL B 130 SHEET 1 E 3 VAL B 77 GLU B 78 0 SHEET 2 E 3 LYS B 81 GLY B 87 -1 O LYS B 81 N GLU B 78 SHEET 3 E 3 TRP B 93 ALA B 94 -1 O ALA B 94 N VAL B 85 SHEET 1 F 3 VAL B 77 GLU B 78 0 SHEET 2 F 3 LYS B 81 GLY B 87 -1 O LYS B 81 N GLU B 78 SHEET 3 F 3 ILE B 163 PHE B 169 -1 O GLN B 167 N LEU B 84 CISPEP 1 LYS B 60 PRO B 61 0 -0.16 SITE 1 AC1 6 LEU A 177 SER A 178 GLU A 179 LYS A 180 SITE 2 AC1 6 PEG A 310 HOH A 464 SITE 1 AC2 3 ASP A 5 TYR A 9 HOH A 632 SITE 1 AC3 10 ASP A 71 ARG A 73 GLN A 139 TYR A 143 SITE 2 AC3 10 LYS A 145 LYS A 180 ARG A 181 HOH A 427 SITE 3 AC3 10 HOH A 578 PRO B 61 SITE 1 AC4 9 ARG A 73 VAL A 85 GLY A 97 GLU A 117 SITE 2 AC4 9 GLU A 162 ARG A 181 HOH A 430 HOH A 442 SITE 3 AC4 9 HOH A 593 SITE 1 AC5 8 ARG A 86 TRP A 191 GLN A 192 GLN A 195 SITE 2 AC5 8 HIS A 197 HOH A 413 HOH A 616 HOH A 617 SITE 1 AC6 6 GLU A 101 TYR A 104 LYS A 112 LYS B 8 SITE 2 AC6 6 ARG B 12 HOH B 509 SITE 1 AC7 8 LEU A 111 LYS A 112 GLU A 115 LYS A 121 SITE 2 AC7 8 ALA A 122 HOH A 445 HOH A 446 HOH A 470 SITE 1 AC8 4 LYS A 8 ASN A 134 HOH A 420 HOH B 571 SITE 1 AC9 7 ARG A 135 ASP A 203 HOH A 438 HOH A 605 SITE 2 AC9 7 HOH A 633 SER B 105 GLU B 108 SITE 1 BC1 8 ASN A 176 LEU A 177 GLU A 179 LYS A 184 SITE 2 BC1 8 EDO A 301 HOH A 414 HOH A 462 HOH A 629 SITE 1 BC2 5 LYS A 2 THR A 3 SER A 4 HOH A 498 SITE 2 BC2 5 HOH A 508 SITE 1 BC3 7 ALA A 66 HOH A 429 HOH A 485 HOH A 511 SITE 2 BC3 7 PHE B 99 GLY B 100 GLU B 101 SITE 1 BC4 14 THR A 62 SER A 63 TYR A 65 ALA A 66 SITE 2 BC4 14 THR A 67 LEU A 69 LYS A 141 GLN A 142 SITE 3 BC4 14 HOH A 412 HOH A 416 HOH A 502 HOH A 584 SITE 4 BC4 14 LEU B 69 VAL B 102 SITE 1 BC5 9 SER A 63 VAL A 102 HOH A 507 ALA B 15 SITE 2 BC5 9 LEU B 69 LYS B 141 GLN B 142 HOH B 415 SITE 3 BC5 9 HOH B 441 SITE 1 BC6 7 GLU A 78 PHE A 120 LEU A 152 PHE A 168 SITE 2 BC6 7 HOH A 532 HOH A 534 HOH A 590 SITE 1 BC7 6 ASP A 91 TRP A 93 GLN A 167 ASN A 176 SITE 2 BC7 6 EDO A 317 HOH A 408 SITE 1 BC8 7 ASP A 91 ASN A 176 LEU A 189 GLN A 192 SITE 2 BC8 7 ARG A 198 PEG A 316 HOH A 408 SITE 1 BC9 6 GLN B 139 SER B 140 LYS B 180 EDO B 302 SITE 2 BC9 6 HOH B 432 HOH B 461 SITE 1 CC1 5 ASN B 45 LEU B 138 SO4 B 301 HOH B 528 SITE 2 CC1 5 HOH B 530 SITE 1 CC2 9 ARG B 73 GLN B 139 TYR B 143 LYS B 145 SITE 2 CC2 9 LYS B 180 ARG B 181 TRS B 305 HOH B 477 SITE 3 CC2 9 HOH B 626 SITE 1 CC3 7 GLU B 78 PHE B 120 PHE B 168 HOH B 438 SITE 2 CC3 7 HOH B 534 HOH B 543 HOH B 640 SITE 1 CC4 11 ARG B 73 GLY B 97 GLU B 117 GLU B 162 SITE 2 CC4 11 ILE B 163 ARG B 181 GOL B 303 HOH B 439 SITE 3 CC4 11 HOH B 477 HOH B 596 HOH B 633 SITE 1 CC5 9 PRO A 68 LEU A 69 MET A 70 THR A 144 SITE 2 CC5 9 PRO B 68 MET B 70 THR B 144 PHE B 146 SITE 3 CC5 9 HOH B 544 SITE 1 CC6 8 LYS A 123 LEU B 177 SER B 178 GLU B 179 SITE 2 CC6 8 LYS B 180 HOH B 559 HOH B 604 HOH B 615 SITE 1 CC7 8 ARG A 12 GLU B 31 ASP B 35 GLU B 101 SITE 2 CC7 8 LYS B 112 GLU B 116 HOH B 417 HOH B 525 SITE 1 CC8 5 LEU A 21 THR A 22 HOH B 446 HOH B 618 SITE 2 CC8 5 HOH B 620 SITE 1 CC9 7 ARG A 30 HOH A 441 THR B 24 LYS B 25 SITE 2 CC9 7 PRO B 27 ARG B 30 HOH B 516 SITE 1 DC1 4 LEU B 202 PEG B 313 HOH B 542 HOH B 643 SITE 1 DC2 6 ARG B 86 TRP B 93 GLY B 196 ARG B 198 SITE 2 DC2 6 GLY B 199 HOH B 428 SITE 1 DC3 10 LEU B 174 PRO B 175 ARG B 198 GLY B 199 SITE 2 DC3 10 GLN B 200 TYR B 201 LEU B 202 EDO B 311 SITE 3 DC3 10 HOH B 440 HOH B 567 CRYST1 77.992 77.992 64.704 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012822 0.007403 0.000000 0.00000 SCALE2 0.000000 0.014805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015455 0.00000 MASTER 396 0 30 13 22 0 66 6 0 0 0 32 END