HEADER ISOMERASE 02-OCT-12 4HDT TITLE CRYSTAL STRUCTURE OF A CARNITINYL-COA DEHYDRATASE FROM MYCOBACTERIUM TITLE 2 THERMORESISTIBILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-HYDROXYISOBUTYRYL-COA HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1078020; SOURCE 4 STRAIN: ATCC 19527 / NCTC 10409; SOURCE 5 GENE: KEK_02971, NODE_1249_LENGTH_5618_COV_9.770559_39; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, CARNITINYL-COA DEHYDRATASE, ENOYL-COA HYDRATASE/ISOMERASE, KEYWDS 2 MYCOBACTERIUM THERMORESISTIBILE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 3 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 15-APR-15 4HDT 1 JRNL REVDAT 2 11-MAR-15 4HDT 1 JRNL REVDAT 1 10-OCT-12 4HDT 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 41568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2620 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 283 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2580 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2431 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3526 ; 1.526 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5569 ; 0.838 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.831 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.848 ;23.238 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;11.393 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;13.054 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2994 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 348 REMARK 3 RESIDUE RANGE : A 400 A 406 REMARK 3 RESIDUE RANGE : A 501 A 783 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0070 29.5740 43.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.0059 REMARK 3 T33: 0.1202 T12: 0.0021 REMARK 3 T13: 0.0225 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.0871 L22: 0.7243 REMARK 3 L33: 0.5842 L12: 0.0724 REMARK 3 L13: 0.0664 L23: -0.2196 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: 0.0670 S13: 0.0325 REMARK 3 S21: 0.0411 S22: -0.0221 S23: -0.0492 REMARK 3 S31: 0.0102 S32: 0.0151 S33: -0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075340. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ZN-SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMBIOPACT SCREEN A12: 10MM ZNCL2, REMARK 280 100MM NAOAC PH 5.0, 20% PEG 6000; MYTHA.01530.A.A1.PW28690 AT REMARK 280 29MG/ML; 25% EG AS CRYO, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 312 REMARK 465 LYS A 313 REMARK 465 ASP A 314 REMARK 465 ARG A 315 REMARK 465 THR A 349 REMARK 465 GLN A 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 GLN A 280 CG CD OE1 NE2 REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 VAL A 311 CG1 CG2 REMARK 470 ASN A 316 CG OD1 ND2 REMARK 470 LYS A 318 CG CD CE NZ REMARK 470 ARG A 320 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 80 O HOH A 685 2.03 REMARK 500 OD1 ASP A 238 O HOH A 735 2.14 REMARK 500 O HOH A 666 O HOH A 765 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 65 118.79 -174.77 REMARK 500 ALA A 79 -134.19 -92.09 REMARK 500 ASP A 147 -150.10 -124.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 61 OE1 REMARK 620 2 HIS A 189 NE2 112.1 REMARK 620 3 HOH A 670 O 109.4 101.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 46 OE2 REMARK 620 2 GLU A 348 OE1 104.5 REMARK 620 3 HIS A 97 NE2 116.6 118.0 REMARK 620 4 GLU A 46 OE1 54.7 85.9 82.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 83 OE1 REMARK 620 2 HIS A 32 ND1 114.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 690 O REMARK 620 2 ASP A 193 OD2 120.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 406 DBREF 4HDT A 2 350 UNP G7CC99 G7CC99_MYCTH 2 350 SEQADV 4HDT GLY A -2 UNP G7CC99 EXPRESSION TAG SEQADV 4HDT SER A -1 UNP G7CC99 EXPRESSION TAG SEQADV 4HDT MET A 0 UNP G7CC99 EXPRESSION TAG SEQADV 4HDT VAL A 1 UNP G7CC99 EXPRESSION TAG SEQRES 1 A 353 GLY SER MET VAL THR ALA LYS ASN GLU ASP VAL LEU VAL SEQRES 2 A 353 ASN VAL GLU GLY GLY VAL GLY LEU LEU THR LEU ASN ARG SEQRES 3 A 353 PRO LYS ALA ILE ASN SER LEU THR HIS GLY MET VAL THR SEQRES 4 A 353 THR MET ALA GLU ARG LEU ALA ALA TRP GLU ASN ASP ASP SEQRES 5 A 353 SER VAL ARG ALA VAL LEU LEU THR GLY ALA GLY GLU ARG SEQRES 6 A 353 GLY LEU CYS ALA GLY GLY ASP VAL VAL ALA ILE TYR HIS SEQRES 7 A 353 SER ALA LYS ALA ASP GLY ALA GLU ALA ARG ARG PHE TRP SEQRES 8 A 353 PHE ASP GLU TYR ARG LEU ASN ALA HIS ILE GLY ARG TYR SEQRES 9 A 353 PRO LYS PRO TYR VAL SER ILE MET ASP GLY ILE VAL MET SEQRES 10 A 353 GLY GLY GLY VAL GLY VAL GLY ALA HIS GLY ASN VAL ARG SEQRES 11 A 353 VAL VAL THR ASP THR THR LYS MET ALA MET PRO GLU VAL SEQRES 12 A 353 GLY ILE GLY PHE ILE PRO ASP VAL GLY GLY THR TYR LEU SEQRES 13 A 353 LEU SER ARG ALA PRO GLY LYS LEU GLY LEU HIS ALA ALA SEQRES 14 A 353 LEU THR GLY ALA PRO PHE SER GLY ALA ASP ALA ILE VAL SEQRES 15 A 353 MET GLY PHE ALA ASP HIS TYR VAL PRO HIS ASP LYS ILE SEQRES 16 A 353 ASP GLU PHE THR ARG ALA VAL ILE ALA ASP GLY VAL ASP SEQRES 17 A 353 ALA ALA LEU ALA ALA HIS ALA GLN GLU PRO PRO ALA SER SEQRES 18 A 353 PRO LEU ALA GLU GLN ARG SER TRP ILE ASP GLU CYS TYR SEQRES 19 A 353 THR GLY ASP THR VAL ALA ASP ILE ILE ALA ALA LEU ARG SEQRES 20 A 353 ALA HIS ASP ALA PRO ALA ALA GLY GLU ALA ALA ASP LEU SEQRES 21 A 353 ILE ALA THR ARG SER PRO ILE ALA LEU SER VAL THR LEU SEQRES 22 A 353 GLU SER VAL ARG ARG ALA ALA LYS LEU GLN SER LEU GLU SEQRES 23 A 353 ASP THR LEU ARG GLN GLU TYR ARG VAL SER CYS ALA SER SEQRES 24 A 353 LEU LYS SER HIS ASP LEU VAL GLU GLY ILE ARG ALA GLN SEQRES 25 A 353 LEU VAL ASP LYS ASP ARG ASN PRO LYS TRP ARG PRO ALA SEQRES 26 A 353 THR LEU ALA GLU VAL THR GLU ALA ASP VAL GLU ALA TYR SEQRES 27 A 353 PHE ALA PRO VAL ASP PRO GLU LEU THR PHE GLU GLY GLU SEQRES 28 A 353 THR GLN HET ZN A 400 1 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET CL A 405 1 HET ACT A 406 4 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 2 ZN 5(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 ACT C2 H3 O2 1- FORMUL 9 HOH *283(H2 O) HELIX 1 1 ARG A 23 ILE A 27 5 5 HELIX 2 2 THR A 31 ASN A 47 1 17 HELIX 3 3 ASP A 69 ALA A 79 1 11 HELIX 4 4 GLY A 81 TYR A 101 1 21 HELIX 5 5 GLY A 115 ALA A 122 1 8 HELIX 6 6 PRO A 138 GLY A 143 5 6 HELIX 7 7 GLY A 149 ARG A 156 1 8 HELIX 8 8 LYS A 160 GLY A 169 1 10 HELIX 9 9 SER A 173 MET A 180 1 8 HELIX 10 10 PRO A 188 ASP A 190 5 3 HELIX 11 11 LYS A 191 GLY A 203 1 13 HELIX 12 12 GLY A 203 ALA A 212 1 10 HELIX 13 13 SER A 218 GLN A 223 1 6 HELIX 14 14 GLN A 223 TYR A 231 1 9 HELIX 15 15 THR A 235 ASP A 247 1 13 HELIX 16 16 ALA A 248 ALA A 259 1 12 HELIX 17 17 SER A 262 ALA A 277 1 16 HELIX 18 18 SER A 281 LEU A 297 1 17 HELIX 19 19 SER A 299 VAL A 311 1 13 HELIX 20 20 THR A 323 VAL A 327 5 5 HELIX 21 21 THR A 328 ALA A 334 1 7 HELIX 22 22 TYR A 335 ALA A 337 5 3 SHEET 1 A 6 VAL A 8 GLU A 13 0 SHEET 2 A 6 VAL A 16 LEU A 21 -1 O LEU A 18 N ASN A 11 SHEET 3 A 6 ALA A 53 GLY A 58 1 O ALA A 53 N GLY A 17 SHEET 4 A 6 TYR A 105 MET A 109 1 O VAL A 106 N LEU A 56 SHEET 5 A 6 VAL A 126 VAL A 129 1 O VAL A 128 N SER A 107 SHEET 6 A 6 HIS A 185 TYR A 186 1 O HIS A 185 N VAL A 129 SHEET 1 B 2 ILE A 112 MET A 114 0 SHEET 2 B 2 LYS A 134 ALA A 136 1 O LYS A 134 N VAL A 113 LINK OE1 GLU A 61 ZN ZN A 401 1555 1555 1.92 LINK OE2 GLU A 46 ZN ZN A 400 1555 1555 1.93 LINK OE1 GLU A 83 ZN ZN A 402 1555 1555 1.95 LINK OE1 GLU A 348 ZN ZN A 400 1555 1555 2.00 LINK NE2 HIS A 189 ZN ZN A 401 1555 1555 2.03 LINK ZN ZN A 401 O HOH A 670 1555 1555 2.03 LINK ND1 HIS A 75 ZN ZN A 403 1555 1555 2.07 LINK ND1 HIS A 32 ZN ZN A 402 1555 1555 2.09 LINK NE2 HIS A 97 ZN ZN A 400 1555 1555 2.09 LINK ZN ZN A 404 O HOH A 690 1555 1555 2.19 LINK OD2 ASP A 193 ZN ZN A 404 1555 1555 2.42 LINK OE1 GLU A 46 ZN ZN A 400 1555 1555 2.64 CISPEP 1 ARG A 320 PRO A 321 0 -0.02 CISPEP 2 ASP A 340 PRO A 341 0 6.54 SITE 1 AC1 4 GLU A 46 HIS A 97 GLU A 348 CL A 405 SITE 1 AC2 3 GLU A 61 HIS A 189 HOH A 670 SITE 1 AC3 4 HIS A 32 GLU A 83 GLU A 229 HIS A 246 SITE 1 AC4 2 HIS A 75 ASP A 247 SITE 1 AC5 3 ASP A 193 HOH A 583 HOH A 690 SITE 1 AC6 5 GLU A 46 HIS A 97 ARG A 100 GLU A 348 SITE 2 AC6 5 ZN A 400 SITE 1 AC7 7 THR A 31 HIS A 32 ASP A 69 ALA A 72 SITE 2 AC7 7 GLU A 83 PHE A 87 HOH A 594 CRYST1 48.200 62.400 56.880 90.00 109.59 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020747 0.000000 0.007383 0.00000 SCALE2 0.000000 0.016026 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018661 0.00000 MASTER 384 0 7 22 8 0 9 6 0 0 0 28 END