HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-OCT-12 4HDK TITLE CRYSTAL STRUCTURE OF ARSAB IN COMPLEX WITH PHLOROGLUCINOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARSA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.21; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ARSB; COMPND 8 CHAIN: B; COMPND 9 EC: 2.4.2.21; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROMUSA OVATA; SOURCE 3 ORGANISM_TAXID: 2378; SOURCE 4 GENE: ARSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JE13607; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PARSAB22; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SPOROMUSA OVATA; SOURCE 12 ORGANISM_TAXID: 2378; SOURCE 13 GENE: ARSB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: JE13607; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PARSAB22 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.NEWMISTER,C.H.CHAN,J.C.ESCALANTE-SEMERENA,I.RAYMENT REVDAT 2 30-JAN-13 4HDK 1 JRNL REVDAT 1 24-OCT-12 4HDK 0 JRNL AUTH S.A.NEWMISTER,C.H.CHAN,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION OF THE NICOTINATE JRNL TITL 2 MONONUCLEOTIDE:PHENOL/P-CRESOL PHOSPHORIBOSYLTRANSFERASE JRNL TITL 3 (ARSAB) ENZYME FROM SPOROMUSA OVATA. JRNL REF BIOCHEMISTRY V. 51 8571 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23039029 JRNL DOI 10.1021/BI301142H REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 100357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5013 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6821 ; 2.483 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 699 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;36.998 ;24.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;14.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.281 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3689 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4HDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% MEPEG5000, 100 MM MOPS, 20 MM REMARK 280 NACL, 10 MM PHLOROGLUCINOL, 12% ETHYLENE GLYCOL , PH 7.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.38900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.19400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.68250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.19400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.38900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.68250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 77 REMARK 465 ALA A 78 REMARK 465 TYR A 79 REMARK 465 ASP A 209 REMARK 465 SER A 210 REMARK 465 ARG A 211 REMARK 465 ARG A 344 REMARK 465 GLY A 345 REMARK 465 GLY A 346 REMARK 465 LYS A 347 REMARK 465 ALA A 348 REMARK 465 ASN A 349 REMARK 465 ALA A 350 REMARK 465 MET B 1 REMARK 465 MET B 71 REMARK 465 ALA B 72 REMARK 465 THR B 73 REMARK 465 ASP B 74 REMARK 465 GLN B 75 REMARK 465 GLN B 76 REMARK 465 ALA B 335 REMARK 465 GLN B 336 REMARK 465 ASP B 337 REMARK 465 GLY B 338 REMARK 465 PRO B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 LEU B 342 REMARK 465 ARG B 343 REMARK 465 GLN B 344 REMARK 465 SER B 345 REMARK 465 LYS B 346 REMARK 465 ASP B 347 REMARK 465 VAL B 348 REMARK 465 ARG B 349 REMARK 465 ASP B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 104 O HOH B 694 1.98 REMARK 500 O HOH B 654 O HOH B 780 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 176 CD GLU A 176 OE2 -0.083 REMARK 500 THR A 270 N THR A 270 CA -0.145 REMARK 500 GLU A 312 CD GLU A 312 OE2 -0.077 REMARK 500 GLU A 319 CD GLU A 319 OE2 -0.075 REMARK 500 GLU B 18 CD GLU B 18 OE2 0.082 REMARK 500 GLU B 159 CD GLU B 159 OE2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU A 307 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 154 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PRO B 193 C - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG B 243 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG B 243 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 MET B 299 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 93 -68.51 -100.93 REMARK 500 ASP A 265 -121.17 -137.58 REMARK 500 SER A 290 -86.69 -126.74 REMARK 500 HIS B 35 -112.45 45.99 REMARK 500 ASP B 249 -111.40 -103.87 REMARK 500 SER B 274 -85.79 -128.93 REMARK 500 ALA B 281 -4.56 79.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 308 24.9 L L OUTSIDE RANGE REMARK 500 ILE B 261 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13X A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13X B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HDM RELATED DB: PDB REMARK 900 RELATED ID: 4HDR RELATED DB: PDB REMARK 900 RELATED ID: 4HDS RELATED DB: PDB REMARK 900 RELATED ID: 4HDN RELATED DB: PDB DBREF 4HDK A 1 350 UNP F6MZ55 F6MZ55_9FIRM 5 350 DBREF 4HDK B 1 350 UNP F6MZ56 F6MZ56_9FIRM 1 350 SEQADV 4HDK GLY A -1 UNP F6MZ55 EXPRESSION TAG SEQADV 4HDK GLY A 0 UNP F6MZ55 EXPRESSION TAG SEQRES 1 A 348 GLY GLY MET SER LEU LEU GLN ALA THR VAL ALA LYS ILE SEQRES 2 A 348 MET ARG PRO ASP THR VAL ILE LYS ASP GLN VAL LYS THR SEQRES 3 A 348 LYS LEU ALA GLY VAL LEU GLN SER ALA GLY SER LEU GLY SEQRES 4 A 348 ARG LEU GLU ASP MET VAL GLU GLN TYR ALA GLY ILE THR SEQRES 5 A 348 GLY GLU LEU ASN PRO ALA LEU PRO LYS PRO CYS MET VAL SEQRES 6 A 348 VAL ALA SER ALA ASP HIS GLY VAL ALA ARG ARG VAL VAL SEQRES 7 A 348 SER ALA TYR PRO ILE GLU THR THR ILE HIS MET THR ALA SEQRES 8 A 348 ASN TYR LEU ILE SER GLN GLY ALA SER ALA ASN ALA PHE SEQRES 9 A 348 ALA ASN PHE CYS GLY ALA ASP MET VAL VAL VAL ASP MET SEQRES 10 A 348 GLY VAL ALA GLY ASP LEU SER TYR VAL PRO GLY LEU TRP SEQRES 11 A 348 HIS ARG LYS ILE ALA TYR GLY THR GLN ASP PHE THR GLU SEQRES 12 A 348 GLY PRO ALA MET THR ARG GLU GLN ALA ILE GLN ALA VAL SEQRES 13 A 348 GLU THR GLY ILE ASP ILE VAL ASN ASP ARG VAL LYS HIS SEQRES 14 A 348 GLY ASN ARG CYS PHE CYS LEU GLY GLU MET GLY ILE GLY SEQRES 15 A 348 ASN THR THR SER SER ALA THR ILE VAL GLY ALA PHE THR SEQRES 16 A 348 GLY LEU ALA PRO GLU LYS VAL THR GLY ARG GLY THR GLY SEQRES 17 A 348 ILE SER ASP SER ARG LEU LYS THR LYS MET GLU ILE VAL SEQRES 18 A 348 GLY ARG ALA LEU ALA VAL ASN LYS PRO ASN PRO GLN ASP SEQRES 19 A 348 GLY LEU ASP VAL LEU ALA LYS VAL GLY GLY PHE GLU LEU SEQRES 20 A 348 GLY ALA LEU ALA GLY VAL ILE LEU GLY SER ALA ALA ASN SEQRES 21 A 348 ARG CYS ALA VAL VAL ILE ASP GLY LEU ASN THR THR ALA SEQRES 22 A 348 ALA ALA LEU ILE ALA ASN VAL ILE HIS PRO LEU SER LYS SEQRES 23 A 348 GLU TYR MET PHE ALA SER HIS LEU SER GLY GLU PRO ALA SEQRES 24 A 348 HIS SER ILE ALA LEU ARG GLN LEU GLN LEU GLU ALA CYS SEQRES 25 A 348 LEU GLU LEU GLY VAL ARG LEU GLY GLU GLY ILE GLY ALA SEQRES 26 A 348 SER MET VAL VAL ASP MET LEU TYR VAL ALA ILE LYS LEU SEQRES 27 A 348 LEU ASN ASN ARG GLY GLY LYS ALA ASN ALA SEQRES 1 B 350 MET LEU GLU GLU LEU ILE ALA ALA ILE LYS PRO LEU ASP SEQRES 2 B 350 SER ILE ALA MET GLU GLN CYS GLN ARG ARG VAL ASP ASN SEQRES 3 B 350 LEU THR LYS PRO LEU ASN SER LEU HIS SER PHE GLU HIS SEQRES 4 B 350 ILE ALA CYS LYS LEU ALA GLY ILE SER GLY ASN PRO ARG SEQRES 5 B 350 PRO ARG ALA LEU GLU LYS SER ILE ILE ILE MET ALA ALA SEQRES 6 B 350 ASP ASN GLY VAL ALA MET ALA THR ASP GLN GLN GLN MET SEQRES 7 B 350 THR THR ALA ALA ARG LEU THR GLY PHE CYS GLN GLY GLN SEQRES 8 B 350 ALA PRO ILE GLN VAL PHE ALA ALA HIS VAL GLN ALA ARG SEQRES 9 B 350 LEU ILE MET VAL ASP ILE GLY VAL ALA ALA ASP LEU PRO SEQRES 10 B 350 HIS SER PRO ALA VAL CYS ARG LYS LYS LEU ALA TYR GLY SEQRES 11 B 350 SER ARG ASN SER THR GLU GLY PRO ALA MET THR ARG GLN SEQRES 12 B 350 GLN ALA ILE GLN ALA ILE GLU VAL GLY VAL ARG ILE ALA SEQRES 13 B 350 GLN ALA GLU ILE ALA ARG GLY CYS GLN VAL ILE GLY LEU SEQRES 14 B 350 GLY GLU MET GLY LEU GLY GLY LEU ALA ALA ALA MET ALA SEQRES 15 B 350 ILE VAL ALA CYS CYS HIS GLY GLN PRO LEU PRO GLY LEU SEQRES 16 B 350 ALA GLY ARG GLU ALA GLU LEU VAL ASN THR ALA ILE ALA SEQRES 17 B 350 VAL ASN ARG PRO ASN ALA ALA ASP PRO LEU ASP ILE LEU SEQRES 18 B 350 THR LYS VAL GLY GLY LEU ALA ILE ALA GLY LEU VAL GLY SEQRES 19 B 350 VAL ILE LEU GLY ALA ALA ALA GLY ARG ALA ALA VAL VAL SEQRES 20 B 350 LEU ASP GLY LEU ALA THR SER THR ALA ALA LEU ILE ALA SEQRES 21 B 350 ILE ASN LEU VAL PRO ASP VAL LYS PRO TYR LEU ILE GLY SEQRES 22 B 350 SER HIS PHE ALA ALA GLU PRO ALA HIS GLU THR ALA LEU SEQRES 23 B 350 ALA LEU LEU ASP VAL PRO ALA TYR LEU GLN LEU LYS MET SEQRES 24 B 350 ASN LEU GLY GLU GLY THR GLY ALA ALA LEU GLY MET SER SEQRES 25 B 350 VAL ILE ASN ALA THR LEU HIS MET LEU ASN ASP MET LYS SEQRES 26 B 350 THR PHE GLY GLU ALA GLU VAL ALA VAL ALA GLN ASP GLY SEQRES 27 B 350 PRO GLY ALA LEU ARG GLN SER LYS ASP VAL ARG ASP HET CL A 701 1 HET 13X A 702 9 HET EDO A 703 4 HET EDO B 401 4 HET 13X B 402 9 HET EDO B 403 4 HETNAM CL CHLORIDE ION HETNAM 13X BENZENE-1,3,5-TRIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN 13X PHLOROGLUCINOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL CL 1- FORMUL 4 13X 2(C6 H6 O3) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 9 HOH *501(H2 O) HELIX 1 1 SER A 2 ILE A 11 1 10 HELIX 2 2 ASP A 15 LEU A 30 1 16 HELIX 3 3 GLY A 37 GLY A 51 1 15 HELIX 4 4 HIS A 69 VAL A 75 5 7 HELIX 5 5 GLU A 82 ILE A 93 1 12 HELIX 6 6 ALA A 97 CYS A 106 1 10 HELIX 7 7 THR A 146 LYS A 166 1 21 HELIX 8 8 GLY A 180 GLY A 194 1 15 HELIX 9 9 ALA A 196 GLY A 202 1 7 HELIX 10 10 THR A 214 LYS A 227 1 14 HELIX 11 11 ASP A 232 GLY A 241 1 10 HELIX 12 12 GLY A 242 ASN A 258 1 17 HELIX 13 13 GLY A 266 HIS A 280 1 15 HELIX 14 14 LEU A 282 GLU A 285 5 4 HELIX 15 15 GLU A 295 LEU A 305 1 11 HELIX 16 16 GLY A 320 ASN A 342 1 19 HELIX 17 17 GLU B 3 ALA B 8 1 6 HELIX 18 18 ASP B 13 LEU B 27 1 15 HELIX 19 19 HIS B 35 GLY B 49 1 15 HELIX 20 20 THR B 79 GLN B 89 1 11 HELIX 21 21 ALA B 92 GLN B 102 1 11 HELIX 22 22 THR B 141 ARG B 162 1 22 HELIX 23 23 GLY B 175 GLY B 189 1 15 HELIX 24 24 ALA B 196 ARG B 211 1 16 HELIX 25 25 ASP B 216 GLY B 225 1 10 HELIX 26 26 GLY B 226 GLY B 242 1 17 HELIX 27 27 GLY B 250 VAL B 264 1 15 HELIX 28 28 PRO B 265 PRO B 269 5 5 HELIX 29 29 ALA B 281 ASP B 290 1 10 HELIX 30 30 GLY B 304 MET B 324 1 21 HELIX 31 31 THR B 326 VAL B 332 1 7 SHEET 1 A 6 TRP A 128 HIS A 129 0 SHEET 2 A 6 ASP A 109 GLY A 116 1 N ASP A 114 O TRP A 128 SHEET 3 A 6 LYS A 59 ALA A 67 1 N MET A 62 O ASP A 109 SHEET 4 A 6 ASN A 169 MET A 177 1 O CYS A 173 N VAL A 63 SHEET 5 A 6 ALA A 261 VAL A 263 1 O VAL A 263 N PHE A 172 SHEET 6 A 6 MET A 287 PHE A 288 1 O PHE A 288 N VAL A 262 SHEET 1 B 6 VAL B 122 ARG B 124 0 SHEET 2 B 6 ALA B 103 GLY B 111 1 N MET B 107 O CYS B 123 SHEET 3 B 6 LYS B 58 ALA B 65 1 N ILE B 60 O ARG B 104 SHEET 4 B 6 VAL B 166 MET B 172 1 O GLY B 168 N SER B 59 SHEET 5 B 6 ALA B 245 VAL B 247 1 O ALA B 245 N ILE B 167 SHEET 6 B 6 LEU B 271 ILE B 272 1 O ILE B 272 N VAL B 246 CISPEP 1 PRO B 193 GLY B 194 0 -10.12 SITE 1 AC1 3 HIS A 129 ARG A 130 ARG B 132 SITE 1 AC2 10 MET A 87 MET A 177 GLU A 319 HOH A 871 SITE 2 AC2 10 HOH A 878 THR B 28 LYS B 29 PRO B 30 SITE 3 AC2 10 PHE B 327 HOH B 507 SITE 1 AC3 6 GLY A 178 GLY A 180 ASN A 181 THR A 182 SITE 2 AC3 6 HOH A 847 HOH A 916 SITE 1 AC4 4 ASN A 104 PHE A 105 HIS B 319 HOH B 501 SITE 1 AC5 7 VAL A 29 ALA A 33 ARG B 83 GLY B 86 SITE 2 AC5 7 ALA B 92 PRO B 93 GLU B 303 SITE 1 AC6 6 PHE A 105 ASP A 328 HIS B 100 SER B 312 SITE 2 AC6 6 ASN B 315 HOH B 550 CRYST1 52.778 77.365 152.388 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006562 0.00000 MASTER 416 0 6 31 12 0 11 6 0 0 0 54 END