HEADER TRANSFERASE 02-OCT-12 4HDG TITLE CRYSTAL STRUCTURE OF VIRAL RDRP IN COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RNA DEPENDENT RNA POLYMERASE MODULE, RESIDUES 272-905; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JAPANESE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11072; SOURCE 4 STRAIN: P20778; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C41DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P1 KEYWDS DNA/RNA POLYMERASES, RNA DEPENDENT RNA POLYMERASE, GTP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SURANA,D.T.NAIR REVDAT 2 12-MAR-14 4HDG 1 JRNL REVDAT 1 25-DEC-13 4HDG 0 JRNL AUTH P.SURANA,V.SATCHIDANANDAM,D.T.NAIR JRNL TITL RNA-DEPENDENT RNA POLYMERASE OF JAPANESE ENCEPHALITIS VIRUS JRNL TITL 2 BINDS THE INITIATOR NUCLEOTIDE GTP TO FORM A MECHANISTICALLY JRNL TITL 3 IMPORTANT PRE-INITIATION STATE. JRNL REF NUCLEIC ACIDS RES. V. 42 2758 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24293643 JRNL DOI 10.1093/NAR/GKT1106 REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 53264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4037 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3895 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.07000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : -0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.503 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.297 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.714 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10140 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13742 ; 1.587 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1220 ; 6.993 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 488 ;33.617 ;23.484 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1765 ;16.975 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 87 ;17.158 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1460 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7699 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 6074 ; 1.291 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9774 ; 2.255 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4066 ; 3.865 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3968 ; 5.889 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 364 REMARK 3 RESIDUE RANGE : A 390 A 499 REMARK 3 RESIDUE RANGE : A 544 A 606 REMARK 3 ORIGIN FOR THE GROUP (A): -50.7329 -11.9249 -35.6437 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.0739 REMARK 3 T33: 0.0547 T12: -0.0479 REMARK 3 T13: 0.0410 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 0.4272 L22: 0.7201 REMARK 3 L33: 0.2497 L12: 0.1555 REMARK 3 L13: 0.2267 L23: -0.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.0134 S12: -0.0993 S13: 0.0426 REMARK 3 S21: -0.0944 S22: -0.0162 S23: 0.0723 REMARK 3 S31: 0.1328 S32: -0.0828 S33: 0.0296 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 274 B 364 REMARK 3 RESIDUE RANGE : B 390 B 499 REMARK 3 RESIDUE RANGE : B 544 B 606 REMARK 3 ORIGIN FOR THE GROUP (A): -50.6785 31.4954 -20.7226 REMARK 3 T TENSOR REMARK 3 T11: 0.1619 T22: 0.0599 REMARK 3 T33: 0.0743 T12: 0.0175 REMARK 3 T13: -0.0176 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 0.1186 L22: 0.7898 REMARK 3 L33: 0.1737 L12: 0.0255 REMARK 3 L13: -0.0377 L23: -0.2416 REMARK 3 S TENSOR REMARK 3 S11: -0.0586 S12: 0.0285 S13: -0.0317 REMARK 3 S21: 0.2014 S22: 0.0254 S23: 0.1099 REMARK 3 S31: -0.1301 S32: -0.0211 S33: 0.0332 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 365 A 389 REMARK 3 RESIDUE RANGE : A 500 A 543 REMARK 3 RESIDUE RANGE : A 607 A 717 REMARK 3 ORIGIN FOR THE GROUP (A): -37.5278 5.7384 -52.6011 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.0540 REMARK 3 T33: 0.0618 T12: 0.0039 REMARK 3 T13: 0.0254 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.2682 L22: 0.7867 REMARK 3 L33: 0.2087 L12: 0.0212 REMARK 3 L13: 0.0608 L23: 0.1090 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.0374 S13: 0.0144 REMARK 3 S21: -0.1998 S22: -0.0049 S23: -0.0021 REMARK 3 S31: 0.0038 S32: 0.0131 S33: 0.0487 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 718 A 889 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8637 -11.0200 -30.3878 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0561 REMARK 3 T33: 0.1395 T12: 0.0548 REMARK 3 T13: 0.0200 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 0.1009 L22: 0.7949 REMARK 3 L33: 1.4771 L12: 0.0531 REMARK 3 L13: -0.1608 L23: -0.3088 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0069 S13: 0.0078 REMARK 3 S21: -0.0278 S22: -0.0171 S23: -0.2146 REMARK 3 S31: 0.2203 S32: 0.0662 S33: 0.0111 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 365 B 389 REMARK 3 RESIDUE RANGE : B 500 B 543 REMARK 3 RESIDUE RANGE : B 607 B 717 REMARK 3 ORIGIN FOR THE GROUP (A): -37.5669 13.8735 -3.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.0382 REMARK 3 T33: 0.0567 T12: -0.0014 REMARK 3 T13: -0.0350 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.4955 L22: 0.5865 REMARK 3 L33: 0.3122 L12: 0.0034 REMARK 3 L13: -0.1095 L23: -0.1246 REMARK 3 S TENSOR REMARK 3 S11: -0.0302 S12: 0.0199 S13: -0.0161 REMARK 3 S21: 0.2685 S22: -0.0220 S23: -0.0153 REMARK 3 S31: -0.0405 S32: 0.0149 S33: 0.0522 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 718 B 889 REMARK 3 ORIGIN FOR THE GROUP (A): -16.7880 30.4756 -25.9709 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0537 REMARK 3 T33: 0.1501 T12: -0.0492 REMARK 3 T13: -0.0514 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 0.1746 L22: 0.4843 REMARK 3 L33: 1.3748 L12: 0.0631 REMARK 3 L13: 0.0358 L23: -0.3821 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: 0.0057 S13: -0.0086 REMARK 3 S21: 0.0831 S22: -0.0564 S23: -0.2250 REMARK 3 S31: -0.1289 S32: 0.0729 S33: 0.0791 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075327. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP AND PHASER (CCP4I) REMARK 200 STARTING MODEL: PDB ENTRY 2HFZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 72.28700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.27700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 72.28700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.27700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1250 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 267 REMARK 465 PRO A 268 REMARK 465 LEU A 269 REMARK 465 GLY A 270 REMARK 465 SER A 271 REMARK 465 VAL A 272 REMARK 465 HIS A 273 REMARK 465 SER A 318 REMARK 465 ALA A 319 REMARK 465 SER A 320 REMARK 465 SER A 321 REMARK 465 SER A 890 REMARK 465 LEU A 891 REMARK 465 ARG A 892 REMARK 465 ARG A 893 REMARK 465 TYR A 894 REMARK 465 GLU A 895 REMARK 465 ASP A 896 REMARK 465 VAL A 897 REMARK 465 LEU A 898 REMARK 465 ILE A 899 REMARK 465 GLN A 900 REMARK 465 GLU A 901 REMARK 465 ASP A 902 REMARK 465 ARG A 903 REMARK 465 VAL A 904 REMARK 465 ILE A 905 REMARK 465 GLY B 267 REMARK 465 PRO B 268 REMARK 465 LEU B 269 REMARK 465 GLY B 270 REMARK 465 SER B 271 REMARK 465 VAL B 272 REMARK 465 HIS B 273 REMARK 465 SER B 318 REMARK 465 ALA B 319 REMARK 465 SER B 320 REMARK 465 SER B 321 REMARK 465 SER B 890 REMARK 465 LEU B 891 REMARK 465 ARG B 892 REMARK 465 ARG B 893 REMARK 465 TYR B 894 REMARK 465 GLU B 895 REMARK 465 ASP B 896 REMARK 465 VAL B 897 REMARK 465 LEU B 898 REMARK 465 ILE B 899 REMARK 465 GLN B 900 REMARK 465 GLU B 901 REMARK 465 ASP B 902 REMARK 465 ARG B 903 REMARK 465 VAL B 904 REMARK 465 ILE B 905 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 PHE A 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 751 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 751 CZ3 CH2 REMARK 470 MET A 830 CG SD CE REMARK 470 ARG B 303 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 408 CG OD1 ND2 REMARK 470 PHE B 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 643 CG CD CE NZ REMARK 470 TRP B 751 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 751 CZ3 CH2 REMARK 470 LYS B 881 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 527 OG1 THR A 661 1.79 REMARK 500 OE1 GLU B 359 O HOH B 1217 1.98 REMARK 500 OE2 GLU A 487 OH TYR A 575 2.08 REMARK 500 OD1 ASN B 406 NH1 ARG B 425 2.12 REMARK 500 NH2 ARG B 546 O HOH B 1259 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 416 CA ALA A 416 CB 0.150 REMARK 500 SER A 422 CB SER A 422 OG 0.133 REMARK 500 PRO A 834 CD PRO A 834 N 0.100 REMARK 500 PRO B 298 CD PRO B 298 N 0.104 REMARK 500 CYS B 733 CB CYS B 733 SG -0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 298 C - N - CA ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG A 392 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU A 500 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG A 502 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 861 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ALA B 409 N - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 PRO B 431 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 CYS B 733 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 297 82.59 112.45 REMARK 500 GLU A 299 89.93 -58.82 REMARK 500 SER A 331 48.07 -140.21 REMARK 500 VAL A 361 -39.11 -135.31 REMARK 500 ARG A 394 148.49 -171.04 REMARK 500 SER A 407 -136.87 -132.31 REMARK 500 ASN A 408 48.52 -92.68 REMARK 500 ALA A 409 166.66 71.27 REMARK 500 ALA A 413 68.53 -65.53 REMARK 500 ALA A 416 55.12 -24.74 REMARK 500 ALA A 534 59.93 -148.78 REMARK 500 ALA A 587 -110.72 21.42 REMARK 500 GLU A 588 74.13 -103.47 REMARK 500 ASP A 600 -149.80 -143.52 REMARK 500 GLN A 601 110.58 -171.89 REMARK 500 ARG A 602 -136.71 73.67 REMARK 500 SER A 604 -152.35 87.73 REMARK 500 ALA A 749 -44.79 -137.07 REMARK 500 ASN A 752 166.38 -44.24 REMARK 500 ILE A 823 -71.03 -127.55 REMARK 500 ASP B 362 47.53 -86.33 REMARK 500 SER B 407 -155.42 -134.59 REMARK 500 ASN B 408 77.45 -63.25 REMARK 500 ALA B 409 -142.01 -45.15 REMARK 500 ALA B 410 48.85 -84.28 REMARK 500 LEU B 411 123.36 -25.70 REMARK 500 ALA B 413 81.40 -65.12 REMARK 500 ALA B 416 66.78 -40.75 REMARK 500 ASN B 419 74.17 34.88 REMARK 500 GLN B 420 1.58 144.93 REMARK 500 TRP B 421 -52.49 -135.59 REMARK 500 SER B 422 -48.05 99.55 REMARK 500 VAL B 509 20.70 -140.57 REMARK 500 ARG B 576 -77.20 -120.45 REMARK 500 ASP B 600 -123.42 -126.36 REMARK 500 GLN B 601 116.74 179.03 REMARK 500 ARG B 602 -100.62 65.82 REMARK 500 SER B 604 -165.70 85.27 REMARK 500 ASN B 752 -115.07 -67.06 REMARK 500 VAL B 753 -45.00 -134.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 416 GLU A 417 139.16 REMARK 500 ASN B 408 ALA B 409 -146.73 REMARK 500 ALA B 416 GLU B 417 144.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 300 10.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 419 24.6 L L OUTSIDE RANGE REMARK 500 ALA B 409 22.7 L L OUTSIDE RANGE REMARK 500 ALA B 416 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1199 DISTANCE = 10.95 ANGSTROMS REMARK 525 HOH A1211 DISTANCE = 13.91 ANGSTROMS REMARK 525 HOH A1250 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 852 SG REMARK 620 2 CYS A 733 SG 111.1 REMARK 620 3 HIS A 717 NE2 119.8 119.5 REMARK 620 4 HOH A1309 O 98.5 117.5 85.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 440 OE2 REMARK 620 2 CYS B 452 SG 109.4 REMARK 620 3 CYS B 449 SG 107.3 114.1 REMARK 620 4 HIS B 444 NE2 92.9 112.7 117.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 440 OE2 REMARK 620 2 HIS A 444 NE2 92.7 REMARK 620 3 CYS A 449 SG 107.4 125.8 REMARK 620 4 CYS A 452 SG 110.1 110.7 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 852 SG REMARK 620 2 HIS B 717 NE2 128.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HDH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME VIRAL RDRP IN COMPLEX WITH ATP DBREF 4HDG A 272 905 UNP G3LHD9 G3LHD9_9FLAV 2799 3432 DBREF 4HDG B 272 905 UNP G3LHD9 G3LHD9_9FLAV 2799 3432 SEQADV 4HDG GLY A 267 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG PRO A 268 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG LEU A 269 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG GLY A 270 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG SER A 271 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG ARG A 373 UNP G3LHD9 LYS 2900 CONFLICT SEQADV 4HDG ASN A 429 UNP G3LHD9 ASP 2956 CONFLICT SEQADV 4HDG ALA A 836 UNP G3LHD9 THR 3363 CONFLICT SEQADV 4HDG GLY B 267 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG PRO B 268 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG LEU B 269 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG GLY B 270 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG SER B 271 UNP G3LHD9 EXPRESSION TAG SEQADV 4HDG ARG B 373 UNP G3LHD9 LYS 2900 CONFLICT SEQADV 4HDG ASN B 429 UNP G3LHD9 ASP 2956 CONFLICT SEQADV 4HDG ALA B 836 UNP G3LHD9 THR 3363 CONFLICT SEQRES 1 A 639 GLY PRO LEU GLY SER VAL HIS SER ASN GLN GLU LYS ILE SEQRES 2 A 639 LYS LYS ARG ILE GLN LYS LEU LYS GLU GLU PHE ALA THR SEQRES 3 A 639 THR TRP HIS LYS ASP PRO GLU HIS PRO TYR ARG THR TRP SEQRES 4 A 639 THR TYR HIS GLY SER TYR GLU VAL LYS ALA THR GLY SER SEQRES 5 A 639 ALA SER SER LEU VAL ASN GLY VAL VAL LYS LEU MET SER SEQRES 6 A 639 LYS PRO TRP ASP ALA ILE ALA ASN VAL THR THR MET ALA SEQRES 7 A 639 MET THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE SEQRES 8 A 639 LYS GLU LYS VAL ASP THR LYS ALA PRO GLU PRO PRO ALA SEQRES 9 A 639 GLY VAL ARG GLU VAL LEU ASN GLU THR THR ASN TRP LEU SEQRES 10 A 639 TRP ALA HIS LEU SER ARG GLU LYS ARG PRO ARG LEU CYS SEQRES 11 A 639 THR LYS GLU GLU PHE ILE LYS LYS VAL ASN SER ASN ALA SEQRES 12 A 639 ALA LEU GLY ALA VAL PHE ALA GLU GLN ASN GLN TRP SER SEQRES 13 A 639 THR ALA ARG GLU ALA VAL ASN ASP PRO ARG PHE TRP GLU SEQRES 14 A 639 MET VAL ASP GLU GLU ARG GLU ASN HIS LEU ARG GLY GLU SEQRES 15 A 639 CYS HIS THR CYS ILE TYR ASN MET MET GLY LYS ARG GLU SEQRES 16 A 639 LYS LYS PRO GLY GLU PHE GLY LYS ALA LYS GLY SER ARG SEQRES 17 A 639 ALA ILE TRP PHE MET TRP LEU GLY ALA ARG TYR LEU GLU SEQRES 18 A 639 PHE GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP LEU SEQRES 19 A 639 SER ARG GLU ASN SER GLY GLY GLY VAL GLU GLY SER GLY SEQRES 20 A 639 VAL GLN LYS LEU GLY TYR ILE LEU ARG ASP ILE ALA GLY SEQRES 21 A 639 LYS GLN GLY GLY LYS MET TYR ALA ASP ASP THR ALA GLY SEQRES 22 A 639 TRP ASP THR ARG ILE THR ARG THR ASP LEU GLU ASN GLU SEQRES 23 A 639 ALA LYS VAL LEU GLU LEU LEU ASP GLY GLU HIS ARG MET SEQRES 24 A 639 LEU ALA ARG ALA ILE ILE GLU LEU THR TYR ARG HIS LYS SEQRES 25 A 639 VAL VAL LYS VAL MET ARG PRO ALA ALA GLU GLY LYS THR SEQRES 26 A 639 VAL MET ASP VAL ILE SER ARG GLU ASP GLN ARG GLY SER SEQRES 27 A 639 GLY GLN VAL VAL THR TYR ALA LEU ASN THR PHE THR ASN SEQRES 28 A 639 ILE ALA VAL GLN LEU VAL ARG LEU MET GLU ALA GLU GLY SEQRES 29 A 639 VAL ILE GLY PRO GLN HIS LEU GLU GLN LEU PRO ARG LYS SEQRES 30 A 639 ASN LYS ILE ALA VAL ARG THR TRP LEU PHE GLU ASN GLY SEQRES 31 A 639 GLU GLU ARG VAL THR ARG MET ALA ILE SER GLY ASP ASP SEQRES 32 A 639 CYS VAL VAL LYS PRO LEU ASP ASP ARG PHE ALA THR ALA SEQRES 33 A 639 LEU HIS PHE LEU ASN ALA MET SER LYS VAL ARG LYS ASP SEQRES 34 A 639 ILE GLN GLU TRP LYS PRO SER HIS GLY TRP HIS ASP TRP SEQRES 35 A 639 GLN GLN VAL PRO PHE CYS SER ASN HIS PHE GLN GLU ILE SEQRES 36 A 639 VAL MET LYS ASP GLY ARG SER ILE VAL VAL PRO CYS ARG SEQRES 37 A 639 GLY GLN ASP GLU LEU ILE GLY ARG ALA ARG ILE SER PRO SEQRES 38 A 639 GLY ALA GLY TRP ASN VAL LYS ASP THR ALA CYS LEU ALA SEQRES 39 A 639 LYS ALA TYR ALA GLN MET TRP LEU LEU LEU TYR PHE HIS SEQRES 40 A 639 ARG ARG ASP LEU ARG LEU MET ALA ASN ALA ILE CYS SER SEQRES 41 A 639 ALA VAL PRO VAL ASP TRP VAL PRO THR GLY ARG THR SER SEQRES 42 A 639 TRP SER ILE HIS SER LYS GLY GLU TRP MET THR THR GLU SEQRES 43 A 639 ASP MET LEU GLN VAL TRP ASN ARG VAL TRP ILE GLU GLU SEQRES 44 A 639 ASN GLU TRP MET MET ASP LYS THR PRO ILE ALA SER TRP SEQRES 45 A 639 THR ASP VAL PRO TYR VAL GLY LYS ARG GLU ASP ILE TRP SEQRES 46 A 639 CYS GLY SER LEU ILE GLY THR ARG SER ARG ALA THR TRP SEQRES 47 A 639 ALA GLU ASN ILE TYR ALA ALA ILE ASN GLN VAL ARG ALA SEQRES 48 A 639 VAL ILE GLY LYS GLU ASN TYR VAL ASP TYR MET THR SER SEQRES 49 A 639 LEU ARG ARG TYR GLU ASP VAL LEU ILE GLN GLU ASP ARG SEQRES 50 A 639 VAL ILE SEQRES 1 B 639 GLY PRO LEU GLY SER VAL HIS SER ASN GLN GLU LYS ILE SEQRES 2 B 639 LYS LYS ARG ILE GLN LYS LEU LYS GLU GLU PHE ALA THR SEQRES 3 B 639 THR TRP HIS LYS ASP PRO GLU HIS PRO TYR ARG THR TRP SEQRES 4 B 639 THR TYR HIS GLY SER TYR GLU VAL LYS ALA THR GLY SER SEQRES 5 B 639 ALA SER SER LEU VAL ASN GLY VAL VAL LYS LEU MET SER SEQRES 6 B 639 LYS PRO TRP ASP ALA ILE ALA ASN VAL THR THR MET ALA SEQRES 7 B 639 MET THR ASP THR THR PRO PHE GLY GLN GLN ARG VAL PHE SEQRES 8 B 639 LYS GLU LYS VAL ASP THR LYS ALA PRO GLU PRO PRO ALA SEQRES 9 B 639 GLY VAL ARG GLU VAL LEU ASN GLU THR THR ASN TRP LEU SEQRES 10 B 639 TRP ALA HIS LEU SER ARG GLU LYS ARG PRO ARG LEU CYS SEQRES 11 B 639 THR LYS GLU GLU PHE ILE LYS LYS VAL ASN SER ASN ALA SEQRES 12 B 639 ALA LEU GLY ALA VAL PHE ALA GLU GLN ASN GLN TRP SER SEQRES 13 B 639 THR ALA ARG GLU ALA VAL ASN ASP PRO ARG PHE TRP GLU SEQRES 14 B 639 MET VAL ASP GLU GLU ARG GLU ASN HIS LEU ARG GLY GLU SEQRES 15 B 639 CYS HIS THR CYS ILE TYR ASN MET MET GLY LYS ARG GLU SEQRES 16 B 639 LYS LYS PRO GLY GLU PHE GLY LYS ALA LYS GLY SER ARG SEQRES 17 B 639 ALA ILE TRP PHE MET TRP LEU GLY ALA ARG TYR LEU GLU SEQRES 18 B 639 PHE GLU ALA LEU GLY PHE LEU ASN GLU ASP HIS TRP LEU SEQRES 19 B 639 SER ARG GLU ASN SER GLY GLY GLY VAL GLU GLY SER GLY SEQRES 20 B 639 VAL GLN LYS LEU GLY TYR ILE LEU ARG ASP ILE ALA GLY SEQRES 21 B 639 LYS GLN GLY GLY LYS MET TYR ALA ASP ASP THR ALA GLY SEQRES 22 B 639 TRP ASP THR ARG ILE THR ARG THR ASP LEU GLU ASN GLU SEQRES 23 B 639 ALA LYS VAL LEU GLU LEU LEU ASP GLY GLU HIS ARG MET SEQRES 24 B 639 LEU ALA ARG ALA ILE ILE GLU LEU THR TYR ARG HIS LYS SEQRES 25 B 639 VAL VAL LYS VAL MET ARG PRO ALA ALA GLU GLY LYS THR SEQRES 26 B 639 VAL MET ASP VAL ILE SER ARG GLU ASP GLN ARG GLY SER SEQRES 27 B 639 GLY GLN VAL VAL THR TYR ALA LEU ASN THR PHE THR ASN SEQRES 28 B 639 ILE ALA VAL GLN LEU VAL ARG LEU MET GLU ALA GLU GLY SEQRES 29 B 639 VAL ILE GLY PRO GLN HIS LEU GLU GLN LEU PRO ARG LYS SEQRES 30 B 639 ASN LYS ILE ALA VAL ARG THR TRP LEU PHE GLU ASN GLY SEQRES 31 B 639 GLU GLU ARG VAL THR ARG MET ALA ILE SER GLY ASP ASP SEQRES 32 B 639 CYS VAL VAL LYS PRO LEU ASP ASP ARG PHE ALA THR ALA SEQRES 33 B 639 LEU HIS PHE LEU ASN ALA MET SER LYS VAL ARG LYS ASP SEQRES 34 B 639 ILE GLN GLU TRP LYS PRO SER HIS GLY TRP HIS ASP TRP SEQRES 35 B 639 GLN GLN VAL PRO PHE CYS SER ASN HIS PHE GLN GLU ILE SEQRES 36 B 639 VAL MET LYS ASP GLY ARG SER ILE VAL VAL PRO CYS ARG SEQRES 37 B 639 GLY GLN ASP GLU LEU ILE GLY ARG ALA ARG ILE SER PRO SEQRES 38 B 639 GLY ALA GLY TRP ASN VAL LYS ASP THR ALA CYS LEU ALA SEQRES 39 B 639 LYS ALA TYR ALA GLN MET TRP LEU LEU LEU TYR PHE HIS SEQRES 40 B 639 ARG ARG ASP LEU ARG LEU MET ALA ASN ALA ILE CYS SER SEQRES 41 B 639 ALA VAL PRO VAL ASP TRP VAL PRO THR GLY ARG THR SER SEQRES 42 B 639 TRP SER ILE HIS SER LYS GLY GLU TRP MET THR THR GLU SEQRES 43 B 639 ASP MET LEU GLN VAL TRP ASN ARG VAL TRP ILE GLU GLU SEQRES 44 B 639 ASN GLU TRP MET MET ASP LYS THR PRO ILE ALA SER TRP SEQRES 45 B 639 THR ASP VAL PRO TYR VAL GLY LYS ARG GLU ASP ILE TRP SEQRES 46 B 639 CYS GLY SER LEU ILE GLY THR ARG SER ARG ALA THR TRP SEQRES 47 B 639 ALA GLU ASN ILE TYR ALA ALA ILE ASN GLN VAL ARG ALA SEQRES 48 B 639 VAL ILE GLY LYS GLU ASN TYR VAL ASP TYR MET THR SER SEQRES 49 B 639 LEU ARG ARG TYR GLU ASP VAL LEU ILE GLN GLU ASP ARG SEQRES 50 B 639 VAL ILE HET GTP A1001 32 HET ZN A1002 1 HET ZN A1003 1 HET GTP B1001 32 HET ZN B1002 1 HET ZN B1003 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM ZN ZINC ION FORMUL 3 GTP 2(C10 H16 N5 O14 P3) FORMUL 4 ZN 4(ZN 2+) FORMUL 9 HOH *455(H2 O) HELIX 1 1 SER A 274 PHE A 290 1 17 HELIX 2 2 ASN A 324 MET A 330 1 7 HELIX 3 3 SER A 331 ALA A 336 5 6 HELIX 4 4 ILE A 337 THR A 342 1 6 HELIX 5 5 THR A 349 VAL A 361 1 13 HELIX 6 6 PRO A 369 SER A 388 1 20 HELIX 7 7 THR A 397 ASN A 406 1 10 HELIX 8 8 THR A 423 ASP A 430 1 8 HELIX 9 9 ASP A 430 ARG A 446 1 17 HELIX 10 10 TRP A 480 GLY A 492 1 13 HELIX 11 11 GLY A 492 ASP A 497 1 6 HELIX 12 12 SER A 501 GLY A 506 1 6 HELIX 13 13 GLY A 513 LYS A 527 1 15 HELIX 14 14 GLY A 539 ARG A 543 5 5 HELIX 15 15 THR A 545 ALA A 553 1 9 HELIX 16 16 LYS A 554 LEU A 559 5 6 HELIX 17 17 ASP A 560 THR A 574 1 15 HELIX 18 18 VAL A 608 GLU A 629 1 22 HELIX 19 19 GLY A 633 LEU A 637 5 5 HELIX 20 20 PRO A 641 THR A 661 1 21 HELIX 21 21 ASP A 676 ALA A 682 5 7 HELIX 22 22 LEU A 683 MET A 689 1 7 HELIX 23 23 ASP A 707 VAL A 711 5 5 HELIX 24 24 GLY A 735 ILE A 745 1 11 HELIX 25 25 ASN A 752 TYR A 771 1 20 HELIX 26 26 ARG A 774 VAL A 788 1 15 HELIX 27 27 ASP A 813 ILE A 823 1 11 HELIX 28 28 SER A 837 VAL A 841 5 5 HELIX 29 29 GLY A 845 CYS A 852 1 8 HELIX 30 30 THR A 858 GLY A 880 1 23 HELIX 31 31 ASN B 275 PHE B 290 1 16 HELIX 32 32 ASN B 324 SER B 331 1 8 HELIX 33 33 LYS B 332 ALA B 336 5 5 HELIX 34 34 ILE B 337 THR B 342 1 6 HELIX 35 35 THR B 349 VAL B 361 1 13 HELIX 36 36 PRO B 369 SER B 388 1 20 HELIX 37 37 THR B 397 ASN B 406 1 10 HELIX 38 38 THR B 423 ASP B 430 1 8 HELIX 39 39 ASP B 430 ARG B 446 1 17 HELIX 40 40 TRP B 480 GLY B 492 1 13 HELIX 41 41 GLY B 492 ASP B 497 1 6 HELIX 42 42 SER B 501 GLY B 506 1 6 HELIX 43 43 GLY B 513 GLY B 526 1 14 HELIX 44 44 GLY B 539 ILE B 544 5 6 HELIX 45 45 THR B 545 ALA B 553 1 9 HELIX 46 46 LYS B 554 LEU B 559 5 6 HELIX 47 47 ASP B 560 THR B 574 1 15 HELIX 48 48 ALA B 587 GLY B 589 5 3 HELIX 49 49 VAL B 608 GLU B 629 1 22 HELIX 50 50 GLY B 633 LEU B 637 5 5 HELIX 51 51 PRO B 641 THR B 661 1 21 HELIX 52 52 ASP B 676 ALA B 682 5 7 HELIX 53 53 LEU B 683 MET B 689 1 7 HELIX 54 54 ASP B 707 VAL B 711 5 5 HELIX 55 55 GLY B 735 ARG B 744 1 10 HELIX 56 56 VAL B 753 TYR B 771 1 19 HELIX 57 57 ARG B 774 SER B 786 1 13 HELIX 58 58 ASP B 813 ILE B 823 1 11 HELIX 59 59 SER B 837 VAL B 841 5 5 HELIX 60 60 GLY B 845 CYS B 852 1 8 HELIX 61 61 THR B 858 ASN B 867 1 10 HELIX 62 62 ASN B 867 GLY B 880 1 14 SHEET 1 A 5 THR A 306 VAL A 313 0 SHEET 2 A 5 LYS A 590 GLU A 599 -1 O VAL A 595 N HIS A 308 SHEET 3 A 5 HIS A 577 ALA A 586 -1 N ALA A 586 O LYS A 590 SHEET 4 A 5 TYR A 454 ARG A 460 1 N TYR A 454 O VAL A 579 SHEET 5 A 5 THR A 346 ASP A 347 -1 N ASP A 347 O LYS A 459 SHEET 1 B 5 THR A 306 VAL A 313 0 SHEET 2 B 5 LYS A 590 GLU A 599 -1 O VAL A 595 N HIS A 308 SHEET 3 B 5 HIS A 577 ALA A 586 -1 N ALA A 586 O LYS A 590 SHEET 4 B 5 TYR A 454 ARG A 460 1 N TYR A 454 O VAL A 579 SHEET 5 B 5 ARG A 474 PHE A 478 -1 O PHE A 478 N ASN A 455 SHEET 1 C 2 MET A 663 SER A 666 0 SHEET 2 C 2 ASP A 669 VAL A 672 -1 O VAL A 671 N ALA A 664 SHEET 1 D 2 HIS A 717 VAL A 722 0 SHEET 2 D 2 SER A 728 CYS A 733 -1 O ILE A 729 N ILE A 721 SHEET 1 E 5 THR B 306 VAL B 313 0 SHEET 2 E 5 THR B 591 GLU B 599 -1 O MET B 593 N TYR B 311 SHEET 3 E 5 HIS B 577 PRO B 585 -1 N VAL B 580 O ILE B 596 SHEET 4 E 5 TYR B 454 ARG B 460 1 N TYR B 454 O LYS B 581 SHEET 5 E 5 THR B 346 ASP B 347 -1 N ASP B 347 O LYS B 459 SHEET 1 F 5 THR B 306 VAL B 313 0 SHEET 2 F 5 THR B 591 GLU B 599 -1 O MET B 593 N TYR B 311 SHEET 3 F 5 HIS B 577 PRO B 585 -1 N VAL B 580 O ILE B 596 SHEET 4 F 5 TYR B 454 ARG B 460 1 N TYR B 454 O LYS B 581 SHEET 5 F 5 ARG B 474 PHE B 478 -1 O PHE B 478 N ASN B 455 SHEET 1 G 2 MET B 663 SER B 666 0 SHEET 2 G 2 ASP B 669 VAL B 672 -1 O VAL B 671 N ALA B 664 SHEET 1 H 2 HIS B 717 VAL B 722 0 SHEET 2 H 2 SER B 728 CYS B 733 -1 O ILE B 729 N ILE B 721 LINK SG CYS A 852 ZN ZN A1003 1555 1555 1.98 LINK OE2 GLU B 440 ZN ZN B1002 1555 1555 2.01 LINK OE2 GLU A 440 ZN ZN A1002 1555 1555 2.02 LINK NE2 HIS A 444 ZN ZN A1002 1555 1555 2.02 LINK SG CYS A 733 ZN ZN A1003 1555 1555 2.09 LINK SG CYS A 449 ZN ZN A1002 1555 1555 2.12 LINK SG CYS B 452 ZN ZN B1002 1555 1555 2.13 LINK SG CYS A 452 ZN ZN A1002 1555 1555 2.14 LINK SG CYS B 449 ZN ZN B1002 1555 1555 2.16 LINK NE2 HIS B 444 ZN ZN B1002 1555 1555 2.17 LINK SG CYS B 852 ZN ZN B1003 1555 1555 2.19 LINK NE2 HIS B 717 ZN ZN B1003 1555 1555 2.24 LINK NE2 HIS A 717 ZN ZN A1003 1555 1555 2.38 LINK ZN ZN A1003 O HOH A1309 1555 1555 2.65 SITE 1 AC1 13 LYS A 463 LYS A 471 ARG A 474 ASP A 541 SITE 2 AC1 13 SER A 604 ASP A 668 ASP A 669 ARG A 734 SITE 3 AC1 13 ARG A 742 SER A 799 TRP A 800 SER A 801 SITE 4 AC1 13 HOH A1260 SITE 1 AC2 4 GLU A 440 HIS A 444 CYS A 449 CYS A 452 SITE 1 AC3 4 HIS A 717 CYS A 733 CYS A 852 HOH A1309 SITE 1 AC4 14 ARG B 460 LYS B 463 LYS B 471 ARG B 474 SITE 2 AC4 14 ASP B 541 SER B 604 ASN B 613 ASP B 668 SITE 3 AC4 14 ASP B 669 ARG B 734 ARG B 742 SER B 799 SITE 4 AC4 14 TRP B 800 SER B 801 SITE 1 AC5 4 GLU B 440 HIS B 444 CYS B 449 CYS B 452 SITE 1 AC6 4 HIS B 717 CYS B 733 CYS B 852 HOH B1344 CRYST1 144.574 86.554 112.650 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006917 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008877 0.00000 MASTER 703 0 6 62 28 0 12 6 0 0 0 100 END