HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-SEP-12 4H8E TITLE STRUCTURE OF S. AUREUS UNDECAPRENYL DIPHOSPHATE SYNTHASE IN COMPLEX TITLE 2 WITH FPP AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNDECAPRENYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UPP SYNTHASE, DI-TRANS,POLY-CIS-DECAPRENYLCISTRANSFERASE, COMPND 5 DITRANS,POLYCIS-UNDECAPRENYL-DIPHOSPHATE SYNTHASE, UNDECAPRENYL COMPND 6 DIPHOSPHATE SYNTHASE, UDS; COMPND 7 EC: 2.5.1.31; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 158879; SOURCE 4 STRAIN: N315; SOURCE 5 GENE: UPPS, SA1103; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-HELIX, PRENYL TRANSFERASE, CELL WALL BIOSYNTHESIS, FARNESYL KEYWDS 2 DIPHOSPHATE BINDING, ISOPENTENYL DIPHOSPHATE BINDING, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHU,E.OLDFIELD REVDAT 3 16-JAN-13 4H8E 1 JRNL REVDAT 2 09-JAN-13 4H8E 1 JRNL REVDAT 1 19-DEC-12 4H8E 0 JRNL AUTH W.ZHU,Y.ZHANG,W.SINKO,M.E.HENSLER,J.OLSON,K.J.MOLOHON, JRNL AUTH 2 S.LINDERT,R.CAO,K.LI,K.WANG,Y.WANG,Y.L.LIU,A.SANKOVSKY, JRNL AUTH 3 C.A.DE OLIVEIRA,D.A.MITCHELL,V.NIZET,J.A.MCCAMMON,E.OLDFIELD JRNL TITL ANTIBACTERIAL DRUG LEADS TARGETING ISOPRENOID BIOSYNTHESIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 123 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23248302 JRNL DOI 10.1073/PNAS.1219899110 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 66023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3349 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4161 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 220 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1988 ; 0.032 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2683 ; 2.655 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 5.747 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;33.007 ;24.632 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 369 ;13.423 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;17.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 292 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1481 ; 0.017 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4H8E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075148. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES SODIUM, PH 6.5, 200 MM REMARK 280 AMMONIUM SULFATE, 25% PEG5000 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.41200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.65150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 39.70600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.65150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.11800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.65150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.70600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.65150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.65150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.11800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.41200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 THR A 11 REMARK 465 ILE A 12 REMARK 465 ASN A 13 REMARK 465 ASN A 14 REMARK 465 TYR A 15 REMARK 465 ASN A 16 REMARK 465 GLU A 17 REMARK 465 GLU A 18 REMARK 465 SER A 254 REMARK 465 GLU A 255 REMARK 465 GLU A 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 121 CG OD1 OD2 REMARK 470 ASN A 175 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 52 CD GLU A 52 OE2 -0.099 REMARK 500 GLU A 235 CD GLU A 235 OE2 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 46 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 207 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 PHE A 221 CB - CG - CD2 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 203 2.10 87.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FPP A 302 O3B REMARK 620 2 FPP A 302 O2A 89.8 REMARK 620 3 HOH A 425 O 97.0 173.1 REMARK 620 4 HOH A 432 O 175.4 86.2 87.1 REMARK 620 5 ASP A 33 OD1 87.2 94.9 86.6 90.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H2J RELATED DB: PDB REMARK 900 RELATED ID: 4H2M RELATED DB: PDB REMARK 900 RELATED ID: 4H2O RELATED DB: PDB REMARK 900 RELATED ID: 4H38 RELATED DB: PDB REMARK 900 RELATED ID: 4H3A RELATED DB: PDB REMARK 900 RELATED ID: 4H3C RELATED DB: PDB DBREF 4H8E A 1 256 UNP P60477 UPPS_STAAN 1 256 SEQRES 1 A 256 MET PHE LYS LYS LEU ILE ASN LYS LYS ASN THR ILE ASN SEQRES 2 A 256 ASN TYR ASN GLU GLU LEU ASP SER SER ASN ILE PRO GLU SEQRES 3 A 256 HIS ILE ALA ILE ILE MET ASP GLY ASN GLY ARG TRP ALA SEQRES 4 A 256 LYS LYS ARG LYS MET PRO ARG ILE LYS GLY HIS TYR GLU SEQRES 5 A 256 GLY MET GLN THR ILE LYS LYS ILE THR ARG ILE ALA SER SEQRES 6 A 256 ASP ILE GLY VAL LYS TYR LEU THR LEU TYR ALA PHE SER SEQRES 7 A 256 THR GLU ASN TRP SER ARG PRO GLU SER GLU VAL ASN TYR SEQRES 8 A 256 ILE MET ASN LEU PRO VAL ASN PHE LEU LYS THR PHE LEU SEQRES 9 A 256 PRO GLU LEU ILE GLU LYS ASN VAL LYS VAL GLU THR ILE SEQRES 10 A 256 GLY PHE THR ASP LYS LEU PRO LYS SER THR ILE GLU ALA SEQRES 11 A 256 ILE ASN ASN ALA LYS GLU LYS THR ALA ASN ASN THR GLY SEQRES 12 A 256 LEU LYS LEU ILE PHE ALA ILE ASN TYR GLY GLY ARG ALA SEQRES 13 A 256 GLU LEU VAL HIS SER ILE LYS ASN MET PHE ASP GLU LEU SEQRES 14 A 256 HIS GLN GLN GLY LEU ASN SER ASP ILE ILE ASP GLU THR SEQRES 15 A 256 TYR ILE ASN ASN HIS LEU MET THR LYS ASP TYR PRO ASP SEQRES 16 A 256 PRO GLU LEU LEU ILE ARG THR SER GLY GLU GLN ARG ILE SEQRES 17 A 256 SER ASN PHE LEU ILE TRP GLN VAL SER TYR SER GLU PHE SEQRES 18 A 256 ILE PHE ASN GLN LYS LEU TRP PRO ASP PHE ASP GLU ASP SEQRES 19 A 256 GLU LEU ILE LYS CYS ILE LYS ILE TYR GLN SER ARG GLN SEQRES 20 A 256 ARG ARG PHE GLY GLY LEU SER GLU GLU HET MG A 301 1 HET FPP A 302 24 HET SO4 A 303 5 HETNAM MG MAGNESIUM ION HETNAM FPP FARNESYL DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 MG MG 2+ FORMUL 3 FPP C15 H28 O7 P2 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *134(H2 O) HELIX 1 1 GLY A 34 ARG A 42 1 9 HELIX 2 2 PRO A 45 GLY A 68 1 24 HELIX 3 3 GLU A 80 ARG A 84 5 5 HELIX 4 4 PRO A 85 LYS A 110 1 26 HELIX 5 5 PHE A 119 LEU A 123 5 5 HELIX 6 6 PRO A 124 THR A 138 1 15 HELIX 7 7 GLY A 153 GLN A 172 1 20 HELIX 8 8 ASN A 175 ILE A 179 5 5 HELIX 9 9 ASP A 180 ASN A 186 1 7 HELIX 10 10 LEU A 227 PHE A 231 5 5 HELIX 11 11 ASP A 232 ARG A 246 1 15 SHEET 1 A 6 LYS A 113 ILE A 117 0 SHEET 2 A 6 LYS A 145 TYR A 152 1 O LEU A 146 N GLU A 115 SHEET 3 A 6 TYR A 71 SER A 78 1 N LEU A 72 O ILE A 147 SHEET 4 A 6 HIS A 27 ILE A 31 1 N ILE A 30 O THR A 73 SHEET 5 A 6 LEU A 198 ARG A 201 1 O ILE A 200 N ILE A 31 SHEET 6 A 6 GLU A 220 PHE A 223 1 O GLU A 220 N LEU A 199 LINK MG MG A 301 O3B FPP A 302 1555 1555 2.03 LINK MG MG A 301 O2A FPP A 302 1555 1555 2.03 LINK MG MG A 301 O HOH A 425 1555 1555 2.07 LINK MG MG A 301 O HOH A 432 1555 1555 2.13 LINK OD1 ASP A 33 MG MG A 301 1555 1555 2.13 SITE 1 AC1 5 ASP A 33 FPP A 302 HOH A 425 HOH A 427 SITE 2 AC1 5 HOH A 432 SITE 1 AC2 18 MET A 32 ASP A 33 GLY A 34 ASN A 35 SITE 2 AC2 18 GLY A 36 ARG A 37 ARG A 46 HIS A 50 SITE 3 AC2 18 ALA A 76 ARG A 84 LEU A 95 PHE A 99 SITE 4 AC2 18 MG A 301 HOH A 425 HOH A 427 HOH A 431 SITE 5 AC2 18 HOH A 432 HOH A 446 SITE 1 AC3 11 ARG A 201 ARG A 207 SER A 209 ARG A 249 SITE 2 AC3 11 PHE A 250 GLY A 251 HOH A 407 HOH A 414 SITE 3 AC3 11 HOH A 425 HOH A 432 HOH A 453 CRYST1 57.303 57.303 158.824 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017451 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006296 0.00000 MASTER 384 0 3 11 6 0 10 6 0 0 0 20 END