HEADER HYDROLASE 12-SEP-12 4H2K TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF SUCCINYL-DIAMINOPIMELATE TITLE 2 DESUCCINYLASE FROM HAEMOPHILUS INFLUENZAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYL-DIAMINOPIMELATE DESUCCINYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SDAP DESUCCINYLASE, N-SUCCINYL-LL-2,6-DIAMINOHEPTANEDIOATE COMPND 5 AMIDOHYDROLASE; COMPND 6 EC: 3.5.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 5 GENE: DAPE, HI_0102; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG7 KEYWDS DAPE, MCSG, PSI-BIOLOGY, STRUCTURAL GENOMICS, MIDWEST CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, HYDROLASE, ZINC-DEPENDENT HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,R.JEDRZEJCZAK,M.MAKOWSKA-GRZYSKA,A.STARUS,R.HOLZ, AUTHOR 2 A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 3 16-AUG-17 4H2K 1 SOURCE REMARK REVDAT 2 26-AUG-15 4H2K 1 JRNL REVDAT 1 21-NOV-12 4H2K 0 JRNL AUTH B.NOCEK,A.STARUS,M.MAKOWSKA-GRZYSKA,B.GUTIERREZ,S.SANCHEZ, JRNL AUTH 2 R.JEDRZEJCZAK,J.C.MACK,K.W.OLSEN,A.JOACHIMIAK,R.C.HOLZ JRNL TITL THE DIMERIZATION DOMAIN IN DAPE ENZYMES IS REQUIRED FOR JRNL TITL 2 CATALYSIS. JRNL REF PLOS ONE V. 9 93593 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 24806882 JRNL DOI 10.1371/JOURNAL.PONE.0093593 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 40252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2679 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.13000 REMARK 3 B22 (A**2) : -1.55000 REMARK 3 B33 (A**2) : 2.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.154 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.151 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.756 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3905 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2545 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5307 ; 2.035 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6293 ; 2.950 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 6.348 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;36.935 ;25.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 659 ;14.106 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 623 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4380 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 698 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : DOUBLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42453 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ISZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 25% PEG 3350, REMARK 280 0.1 M BIS-TRIS, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.36050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 GLY A 182 REMARK 465 PHE A 183 REMARK 465 LEU A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 GLY A 211 REMARK 465 GLY A 212 REMARK 465 ASP A 265 REMARK 465 SER A 266 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 GLY B 177 REMARK 465 ARG B 178 REMARK 465 ARG B 179 REMARK 465 GLY B 180 REMARK 465 GLY B 181 REMARK 465 GLY B 182 REMARK 465 PHE B 183 REMARK 465 LEU B 184 REMARK 465 THR B 185 REMARK 465 LYS B 186 REMARK 465 GLY B 211 REMARK 465 GLY B 212 REMARK 465 SER B 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A -1 CG OD1 ND2 REMARK 470 MET A 1 CG SD CE REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 155 CD CE NZ REMARK 470 LYS A 168 CD CE NZ REMARK 470 ARG A 178 NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 3 CD OE1 OE2 REMARK 470 LYS B 35 CE NZ REMARK 470 ASP B 90 CG OD1 OD2 REMARK 470 ASP B 153 CG OD1 OD2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LYS B 168 CD CE NZ REMARK 470 GLU B 200 CG CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 251 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 -119.12 52.08 REMARK 500 PRO A 72 156.55 -48.07 REMARK 500 MET A 101 30.90 -142.84 REMARK 500 ASN A 121 36.37 -98.33 REMARK 500 ASN A 121 30.86 -94.33 REMARK 500 ALA A 136 -131.08 -99.97 REMARK 500 PRO A 232 -178.21 -62.60 REMARK 500 GLU A 242 134.38 -38.55 REMARK 500 ASN B 46 -125.99 50.44 REMARK 500 THR B 57 15.35 -144.08 REMARK 500 MET B 101 32.12 -141.27 REMARK 500 ASN B 121 40.65 -104.04 REMARK 500 ALA B 136 -127.00 -113.09 REMARK 500 PRO B 232 179.80 -57.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD2 REMARK 620 2 GLU A 135 OE2 101.3 REMARK 620 3 HIS A 238 NE2 92.7 98.1 REMARK 620 4 HOH A1101 O 97.4 96.3 160.5 REMARK 620 5 GLU A 135 OE1 156.0 54.7 90.7 86.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 100 OD1 REMARK 620 2 HIS B 67 NE2 101.0 REMARK 620 3 HOH B1101 O 107.2 118.5 REMARK 620 4 GLU B 163 OE1 95.2 109.0 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 100 OD1 REMARK 620 2 HOH A1101 O 113.4 REMARK 620 3 GLU A 163 OE1 95.0 110.0 REMARK 620 4 HIS A 67 NE2 100.8 115.0 120.4 REMARK 620 5 GLU A 163 OE2 142.4 97.9 53.3 83.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1101 O REMARK 620 2 GLU B 135 OE2 96.8 REMARK 620 3 ASP B 100 OD2 94.5 101.4 REMARK 620 4 HIS B 238 NE2 159.2 95.7 99.3 REMARK 620 5 GLU B 135 OE1 85.3 56.2 157.3 87.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ISZ RELATED DB: PDB REMARK 900 RELATED ID: 3IC1 RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC107340 RELATED DB: TARGETTRACK DBREF 4H2K A 1 180 UNP P44514 DAPE_HAEIN 1 180 DBREF 4H2K A 183 266 UNP P44514 DAPE_HAEIN 294 377 DBREF 4H2K B 1 180 UNP P44514 DAPE_HAEIN 1 180 DBREF 4H2K B 183 266 UNP P44514 DAPE_HAEIN 294 377 SEQADV 4H2K SER A -2 UNP P44514 EXPRESSION TAG SEQADV 4H2K ASN A -1 UNP P44514 EXPRESSION TAG SEQADV 4H2K ALA A 0 UNP P44514 EXPRESSION TAG SEQADV 4H2K GLY A 181 UNP P44514 EXPRESSION TAG SEQADV 4H2K GLY A 182 UNP P44514 EXPRESSION TAG SEQADV 4H2K SER B -2 UNP P44514 EXPRESSION TAG SEQADV 4H2K ASN B -1 UNP P44514 EXPRESSION TAG SEQADV 4H2K ALA B 0 UNP P44514 EXPRESSION TAG SEQADV 4H2K GLY B 181 UNP P44514 LINKER SEQADV 4H2K GLY B 182 UNP P44514 LINKER SEQRES 1 A 269 SER ASN ALA MET LYS GLU LYS VAL VAL SER LEU ALA GLN SEQRES 2 A 269 ASP LEU ILE ARG ARG PRO SER ILE SER PRO ASN ASP GLU SEQRES 3 A 269 GLY CYS GLN GLN ILE ILE ALA GLU ARG LEU GLU LYS LEU SEQRES 4 A 269 GLY PHE GLN ILE GLU TRP MET PRO PHE ASN ASP THR LEU SEQRES 5 A 269 ASN LEU TRP ALA LYS HIS GLY THR SER GLU PRO VAL ILE SEQRES 6 A 269 ALA PHE ALA GLY HIS THR ASP VAL VAL PRO THR GLY ASP SEQRES 7 A 269 GLU ASN GLN TRP SER SER PRO PRO PHE SER ALA GLU ILE SEQRES 8 A 269 ILE ASP GLY MET LEU TYR GLY ARG GLY ALA ALA ASP MET SEQRES 9 A 269 LYS GLY SER LEU ALA ALA MET ILE VAL ALA ALA GLU GLU SEQRES 10 A 269 TYR VAL LYS ALA ASN PRO ASN HIS LYS GLY THR ILE ALA SEQRES 11 A 269 LEU LEU ILE THR SER ASP GLU GLU ALA THR ALA LYS ASP SEQRES 12 A 269 GLY THR ILE HIS VAL VAL GLU THR LEU MET ALA ARG ASP SEQRES 13 A 269 GLU LYS ILE THR TYR CYS MET VAL GLY GLU PRO SER SER SEQRES 14 A 269 ALA LYS ASN LEU GLY ASP VAL VAL LYS ASN GLY ARG ARG SEQRES 15 A 269 GLY GLY GLY PHE LEU THR LYS PRO GLY LYS LEU LEU ASP SEQRES 16 A 269 SER ILE THR SER ALA ILE GLU GLU THR ILE GLY ILE THR SEQRES 17 A 269 PRO LYS ALA GLU THR GLY GLY GLY THR SER ASP GLY ARG SEQRES 18 A 269 PHE ILE ALA LEU MET GLY ALA GLU VAL VAL GLU PHE GLY SEQRES 19 A 269 PRO LEU ASN SER THR ILE HIS LYS VAL ASN GLU CYS VAL SEQRES 20 A 269 SER VAL GLU ASP LEU GLY LYS CYS GLY GLU ILE TYR HIS SEQRES 21 A 269 LYS MET LEU VAL ASN LEU LEU ASP SER SEQRES 1 B 269 SER ASN ALA MET LYS GLU LYS VAL VAL SER LEU ALA GLN SEQRES 2 B 269 ASP LEU ILE ARG ARG PRO SER ILE SER PRO ASN ASP GLU SEQRES 3 B 269 GLY CYS GLN GLN ILE ILE ALA GLU ARG LEU GLU LYS LEU SEQRES 4 B 269 GLY PHE GLN ILE GLU TRP MET PRO PHE ASN ASP THR LEU SEQRES 5 B 269 ASN LEU TRP ALA LYS HIS GLY THR SER GLU PRO VAL ILE SEQRES 6 B 269 ALA PHE ALA GLY HIS THR ASP VAL VAL PRO THR GLY ASP SEQRES 7 B 269 GLU ASN GLN TRP SER SER PRO PRO PHE SER ALA GLU ILE SEQRES 8 B 269 ILE ASP GLY MET LEU TYR GLY ARG GLY ALA ALA ASP MET SEQRES 9 B 269 LYS GLY SER LEU ALA ALA MET ILE VAL ALA ALA GLU GLU SEQRES 10 B 269 TYR VAL LYS ALA ASN PRO ASN HIS LYS GLY THR ILE ALA SEQRES 11 B 269 LEU LEU ILE THR SER ASP GLU GLU ALA THR ALA LYS ASP SEQRES 12 B 269 GLY THR ILE HIS VAL VAL GLU THR LEU MET ALA ARG ASP SEQRES 13 B 269 GLU LYS ILE THR TYR CYS MET VAL GLY GLU PRO SER SER SEQRES 14 B 269 ALA LYS ASN LEU GLY ASP VAL VAL LYS ASN GLY ARG ARG SEQRES 15 B 269 GLY GLY GLY PHE LEU THR LYS PRO GLY LYS LEU LEU ASP SEQRES 16 B 269 SER ILE THR SER ALA ILE GLU GLU THR ILE GLY ILE THR SEQRES 17 B 269 PRO LYS ALA GLU THR GLY GLY GLY THR SER ASP GLY ARG SEQRES 18 B 269 PHE ILE ALA LEU MET GLY ALA GLU VAL VAL GLU PHE GLY SEQRES 19 B 269 PRO LEU ASN SER THR ILE HIS LYS VAL ASN GLU CYS VAL SEQRES 20 B 269 SER VAL GLU ASP LEU GLY LYS CYS GLY GLU ILE TYR HIS SEQRES 21 B 269 LYS MET LEU VAL ASN LEU LEU ASP SER HET ZN A1001 1 HET ZN A1002 1 HET ZN B1001 1 HET ZN B1002 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *284(H2 O) HELIX 1 1 ASN A -1 ARG A 14 1 16 HELIX 2 2 GLY A 24 LYS A 35 1 12 HELIX 3 3 ASP A 75 TRP A 79 5 5 HELIX 4 4 MET A 101 ASN A 119 1 19 HELIX 5 5 GLY A 141 ARG A 152 1 12 HELIX 6 6 LYS A 189 GLY A 203 1 15 HELIX 7 7 THR A 214 LEU A 222 1 9 HELIX 8 8 VAL A 246 LEU A 264 1 19 HELIX 9 9 LYS B 2 ARG B 14 1 13 HELIX 10 10 GLY B 24 LEU B 36 1 13 HELIX 11 11 ASP B 75 TRP B 79 5 5 HELIX 12 12 MET B 101 ASN B 119 1 19 HELIX 13 13 GLY B 141 ARG B 152 1 12 HELIX 14 14 GLY B 188 GLY B 203 1 16 HELIX 15 15 THR B 214 LEU B 222 1 9 HELIX 16 16 VAL B 246 ASP B 265 1 20 SHEET 1 A 6 GLN A 39 TRP A 42 0 SHEET 2 A 6 ASN A 50 HIS A 55 -1 O LYS A 54 N GLN A 39 SHEET 3 A 6 THR A 125 THR A 131 -1 O ILE A 130 N LEU A 51 SHEET 4 A 6 VAL A 61 HIS A 67 1 N ILE A 62 O ALA A 127 SHEET 5 A 6 TYR A 158 VAL A 161 1 O TYR A 158 N VAL A 61 SHEET 6 A 6 GLU A 226 GLU A 229 1 O GLU A 226 N CYS A 159 SHEET 1 B 3 ILE A 88 ILE A 89 0 SHEET 2 B 3 MET A 92 TYR A 94 -1 O MET A 92 N ILE A 89 SHEET 3 B 3 CYS A 243 SER A 245 -1 O VAL A 244 N LEU A 93 SHEET 1 C 2 VAL A 173 LYS A 175 0 SHEET 2 C 2 LYS A 207 GLU A 209 1 O GLU A 209 N VAL A 174 SHEET 1 D 6 GLN B 39 TRP B 42 0 SHEET 2 D 6 ASN B 50 HIS B 55 -1 O LYS B 54 N GLN B 39 SHEET 3 D 6 THR B 125 THR B 131 -1 O ILE B 130 N LEU B 51 SHEET 4 D 6 VAL B 61 HIS B 67 1 N ILE B 62 O ALA B 127 SHEET 5 D 6 TYR B 158 VAL B 161 1 O TYR B 158 N ALA B 63 SHEET 6 D 6 GLU B 226 GLU B 229 1 O GLU B 226 N CYS B 159 SHEET 1 E 3 ILE B 88 ILE B 89 0 SHEET 2 E 3 MET B 92 TYR B 94 -1 O MET B 92 N ILE B 89 SHEET 3 E 3 CYS B 243 SER B 245 -1 O VAL B 244 N LEU B 93 SHEET 1 F 2 VAL B 173 LYS B 175 0 SHEET 2 F 2 LYS B 207 GLU B 209 1 O GLU B 209 N VAL B 174 LINK OD2 ASP A 100 ZN ZN A1002 1555 1555 1.90 LINK OD1 ASP B 100 ZN ZN B1001 1555 1555 1.91 LINK OD1 ASP A 100 ZN ZN A1001 1555 1555 1.97 LINK OE2 GLU A 135 ZN ZN A1002 1555 1555 1.97 LINK ZN ZN A1001 O HOH A1101 1555 1555 2.00 LINK ZN ZN B1002 O HOH B1101 1555 1555 2.01 LINK OE2 GLU B 135 ZN ZN B1002 1555 1555 2.04 LINK NE2 HIS B 67 ZN ZN B1001 1555 1555 2.05 LINK ZN ZN B1001 O HOH B1101 1555 1555 2.06 LINK OE1 GLU A 163 ZN ZN A1001 1555 1555 2.07 LINK OD2 ASP B 100 ZN ZN B1002 1555 1555 2.09 LINK NE2 HIS A 67 ZN ZN A1001 1555 1555 2.11 LINK OE1 GLU B 163 ZN ZN B1001 1555 1555 2.13 LINK NE2 HIS B 238 ZN ZN B1002 1555 1555 2.20 LINK NE2 HIS A 238 ZN ZN A1002 1555 1555 2.24 LINK ZN ZN A1002 O HOH A1101 1555 1555 2.25 LINK OE1 GLU B 135 ZN ZN B1002 1555 1555 2.57 LINK OE2 GLU A 163 ZN ZN A1001 1555 1555 2.62 LINK OE1 GLU A 135 ZN ZN A1002 1555 1555 2.65 CISPEP 1 SER A 19 PRO A 20 0 -2.67 CISPEP 2 GLU A 59 PRO A 60 0 -4.64 CISPEP 3 ASP A 100 MET A 101 0 1.59 CISPEP 4 SER B 19 PRO B 20 0 0.00 CISPEP 5 GLU B 59 PRO B 60 0 -0.17 CISPEP 6 ASP B 100 MET B 101 0 -1.30 SITE 1 AC1 6 HIS A 67 ASP A 100 GLU A 134 GLU A 163 SITE 2 AC1 6 ZN A1002 HOH A1101 SITE 1 AC2 5 ASP A 100 GLU A 135 HIS A 238 ZN A1001 SITE 2 AC2 5 HOH A1101 SITE 1 AC3 6 HIS B 67 ASP B 100 GLU B 134 GLU B 163 SITE 2 AC3 6 ZN B1002 HOH B1101 SITE 1 AC4 5 ASP B 100 GLU B 135 HIS B 238 ZN B1001 SITE 2 AC4 5 HOH B1101 CRYST1 61.667 44.721 92.481 90.00 92.90 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016216 0.000000 0.000821 0.00000 SCALE2 0.000000 0.022361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010827 0.00000 MASTER 391 0 4 16 22 0 8 6 0 0 0 42 END