HEADER TRANSCRIPTION/DNA 06-SEP-12 4GZN TITLE MOUSE ZFP57 ZINC FINGERS IN COMPLEX WITH METHYLATED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*TP*TP*GP*CP*(5CM)P*GP*CP*AP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGER DOMAIN, UNP RESIDUES 137-195; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*CP*TP*GP*(5CM)P*GP*GP*CP*AP*AP*T)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ZINC FINGER PROTEIN 57; COMPND 12 CHAIN: C; COMPND 13 SYNONYM: ZFP-57; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE DNA SEQUENCE OCCURS NATURALLY IN MOUSE.; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: THE DNA SEQUENCE OCCURS NATURALLY IN MOUSE.; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 GENE: ZFP57; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ZINC FINGER, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,X.ZHANG,X.CHENG REVDAT 2 21-NOV-12 4GZN 1 JRNL REVDAT 1 17-OCT-12 4GZN 0 JRNL AUTH Y.LIU,H.TOH,H.SASAKI,X.ZHANG,X.CHENG JRNL TITL AN ATOMIC MODEL OF ZFP57 RECOGNITION OF CPG METHYLATION JRNL TITL 2 WITHIN A SPECIFIC DNA SEQUENCE. JRNL REF GENES DEV. V. 26 2374 2012 JRNL REFN ISSN 0890-9369 JRNL PMID 23059534 JRNL DOI 10.1101/GAD.202200.112 REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 117899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 5979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6867 - 2.1325 1.00 11997 607 0.1521 0.1527 REMARK 3 2 2.1325 - 1.6929 1.00 12091 574 0.1270 0.1382 REMARK 3 3 1.6929 - 1.4790 1.00 11983 664 0.1070 0.1228 REMARK 3 4 1.4790 - 1.3438 1.00 11948 652 0.1032 0.1155 REMARK 3 5 1.3438 - 1.2475 1.00 11958 672 0.1047 0.1127 REMARK 3 6 1.2475 - 1.1740 0.99 11877 655 0.1031 0.1151 REMARK 3 7 1.1740 - 1.1152 0.99 11909 607 0.1045 0.1207 REMARK 3 8 1.1152 - 1.0666 0.97 11707 588 0.1279 0.1403 REMARK 3 9 1.0666 - 1.0256 0.85 10204 565 0.1970 0.1963 REMARK 3 10 1.0256 - 0.9902 0.52 6246 395 0.3251 0.3175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.00 REMARK 3 K_SOL : 0.47 REMARK 3 B_SOL : 65.15 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 7.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44320 REMARK 3 B22 (A**2) : -0.59500 REMARK 3 B33 (A**2) : 0.15190 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1203 REMARK 3 ANGLE : 1.799 1776 REMARK 3 CHIRALITY : 0.075 200 REMARK 3 PLANARITY : 0.010 137 REMARK 3 DIHEDRAL : 25.061 601 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 802194 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 48.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 12.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX (PHENIX.AUTOSOL) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPD, 15% PEG8000, 100MM CACL2 AND REMARK 280 100 MM ACETATE PH 4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.05950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.05950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.10900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.32050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 20.10900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.32050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.05950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.10900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.32050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.05950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 20.10900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 30.32050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA C 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER C 136 CB OG REMARK 470 GLU C 137 CG CD OE1 OE2 REMARK 470 LYS C 193 CG CD CE NZ REMARK 470 PRO C 194 O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 3 O3' DT A 3 C3' -0.047 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 3 O5' - C5' - C4' ANGL. DEV. = -8.2 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA A 10 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT B 3 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG B 7 O4' - C1' - N9 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 377 DISTANCE = 6.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 162 NE2 REMARK 620 2 HIS C 158 NE2 94.4 REMARK 620 3 CYS C 145 SG 121.8 104.6 REMARK 620 4 CYS C 142 SG 107.5 105.4 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 190 NE2 REMARK 620 2 HIS C 186 NE2 107.9 REMARK 620 3 CYS C 173 SG 112.5 106.7 REMARK 620 4 CYS C 170 SG 108.9 105.9 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 208 O REMARK 620 2 HOH A 103 O 165.0 REMARK 620 3 HOH B 206 O 96.7 87.8 REMARK 620 4 HOH B 209 O 86.9 80.8 73.3 REMARK 620 5 HOH B 204 O 81.9 87.3 151.4 78.1 REMARK 620 6 HOH A 101 O 111.0 76.5 127.9 147.6 78.0 REMARK 620 7 HOH B 203 O 81.7 113.2 71.6 141.3 135.6 70.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 205 DBREF 4GZN C 137 195 UNP Q8C6P8 ZFP57_MOUSE 137 195 DBREF 4GZN A 1 11 PDB 4GZN 4GZN 1 11 DBREF 4GZN B 1 11 PDB 4GZN 4GZN 1 11 SEQADV 4GZN SER C 136 UNP Q8C6P8 EXPRESSION TAG SEQRES 1 A 11 DT DA DT DT DG DC 5CM DG DC DA DG SEQRES 1 B 11 DA DC DT DG 5CM DG DG DC DA DA DT SEQRES 1 C 60 SER GLU ARG PRO PHE PHE CYS ASN PHE CYS GLY LYS THR SEQRES 2 C 60 TYR ARG ASP ALA SER GLY LEU SER ARG HIS ARG ARG ALA SEQRES 3 C 60 HIS LEU GLY TYR ARG PRO ARG SER CYS PRO GLU CYS GLY SEQRES 4 C 60 LYS CYS PHE ARG ASP GLN SER GLU VAL ASN ARG HIS LEU SEQRES 5 C 60 LYS VAL HIS GLN ASN LYS PRO ALA MODRES 4GZN 5CM A 7 DC MODRES 4GZN 5CM B 5 DC HET 5CM A 7 31 HET 5CM B 5 20 HET CA B 101 1 HET MPD C 201 8 HET MPD C 202 8 HET ZN C 203 1 HET ZN C 204 1 HET ACT C 205 4 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 1 5CM 2(C10 H16 N3 O7 P) FORMUL 4 CA CA 2+ FORMUL 5 MPD 2(C6 H14 O2) FORMUL 7 ZN 2(ZN 2+) FORMUL 9 ACT C2 H3 O2 1- FORMUL 10 HOH *257(H2 O) HELIX 1 1 ASP C 151 GLY C 164 1 14 HELIX 2 2 ASP C 179 LEU C 187 1 9 HELIX 3 3 LYS C 188 GLN C 191 5 4 SHEET 1 A 2 PHE C 140 PHE C 141 0 SHEET 2 A 2 THR C 148 TYR C 149 -1 O TYR C 149 N PHE C 140 SHEET 1 B 2 ARG C 168 SER C 169 0 SHEET 2 B 2 CYS C 176 PHE C 177 -1 O PHE C 177 N ARG C 168 LINK O3'A DC A 6 P A5CM A 7 1555 1555 1.60 LINK O3'B DC A 6 P B5CM A 7 1555 1555 1.61 LINK O3'A5CM A 7 P A DG A 8 1555 1555 1.61 LINK O3'B5CM A 7 P B DG A 8 1555 1555 1.61 LINK O3' DG B 4 P 5CM B 5 1555 1555 1.61 LINK O3' 5CM B 5 P DG B 6 1555 1555 1.61 LINK NE2 HIS C 162 ZN ZN C 204 1555 1555 2.02 LINK NE2 HIS C 190 ZN ZN C 203 1555 1555 2.04 LINK NE2 HIS C 186 ZN ZN C 203 1555 1555 2.06 LINK NE2 HIS C 158 ZN ZN C 204 1555 1555 2.06 LINK SG CYS C 145 ZN ZN C 204 1555 1555 2.26 LINK SG CYS C 173 ZN ZN C 203 1555 1555 2.30 LINK SG CYS C 170 ZN ZN C 203 1555 1555 2.31 LINK SG CYS C 142 ZN ZN C 204 1555 1555 2.32 LINK CA CA B 101 O HOH B 208 1555 1555 2.37 LINK CA CA B 101 O HOH A 103 1555 1555 2.40 LINK CA CA B 101 O HOH B 206 1555 1555 2.41 LINK CA CA B 101 O HOH B 209 1555 1555 2.43 LINK CA CA B 101 O HOH B 204 1555 1555 2.43 LINK CA CA B 101 O HOH A 101 1555 1555 2.44 LINK CA CA B 101 O HOH B 203 1555 1555 2.46 SITE 1 AC1 7 HOH A 101 HOH A 103 HOH B 203 HOH B 204 SITE 2 AC1 7 HOH B 206 HOH B 208 HOH B 209 SITE 1 AC2 7 HOH A 168 PHE C 141 ASN C 184 HOH C 313 SITE 2 AC2 7 HOH C 328 HOH C 329 HOH C 377 SITE 1 AC3 7 5CM B 5 HOH B 265 HIS C 158 ALA C 161 SITE 2 AC3 7 HIS C 162 GLY C 164 HOH C 333 SITE 1 AC4 4 CYS C 170 CYS C 173 HIS C 186 HIS C 190 SITE 1 AC5 4 CYS C 142 CYS C 145 HIS C 158 HIS C 162 SITE 1 AC6 7 HOH A 111 LEU C 163 TYR C 165 HIS C 190 SITE 2 AC6 7 HOH C 337 HOH C 352 HOH C 392 CRYST1 40.218 60.641 96.119 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010404 0.00000 MASTER 351 0 8 3 4 0 10 6 0 0 0 7 END