HEADER HYDROLASE 05-SEP-12 4GY0 TITLE ROUND 18 ARYLESTERASE VARIANT OF PHOSPHOTRIESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLESTERASE VARIANT OF PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.8.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA HYDROLASE, ARYLESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,N.TOKURIKI,D.S.TAWFIK REVDAT 1 21-AUG-13 4GY0 0 JRNL AUTH N.TOKURIKI,C.J.JACKSON,L.AFRIAT-JURNOU,K.T.WYGANOWSKI, JRNL AUTH 2 R.TANG,D.S.TAWFIK JRNL TITL DIMINISHING RETURNS AND TRADEOFFS CONSTRAIN THE LABORATORY JRNL TITL 2 OPTIMIZATION OF AN ENZYME JRNL REF NAT COMMUN V. 3 1257 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23212386 JRNL DOI 10.1038/NCOMMS2246 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4667 - 5.0894 1.00 2781 147 0.1924 0.2483 REMARK 3 2 5.0894 - 4.0455 1.00 2670 152 0.1409 0.1568 REMARK 3 3 4.0455 - 3.5359 1.00 2651 129 0.1509 0.1807 REMARK 3 4 3.5359 - 3.2134 1.00 2609 142 0.1719 0.1914 REMARK 3 5 3.2134 - 2.9835 1.00 2643 114 0.1712 0.2231 REMARK 3 6 2.9835 - 2.8078 1.00 2600 144 0.1822 0.2039 REMARK 3 7 2.8078 - 2.6674 1.00 2621 125 0.1795 0.2592 REMARK 3 8 2.6674 - 2.5514 1.00 2577 132 0.1928 0.2353 REMARK 3 9 2.5514 - 2.4533 1.00 2598 128 0.1946 0.2866 REMARK 3 10 2.4533 - 2.3687 1.00 2586 148 0.2126 0.2603 REMARK 3 11 2.3687 - 2.2947 1.00 2541 157 0.2323 0.3178 REMARK 3 12 2.2947 - 2.2291 1.00 2560 144 0.2314 0.3088 REMARK 3 13 2.2291 - 2.1705 1.00 2574 135 0.2251 0.3009 REMARK 3 14 2.1705 - 2.1176 1.00 2583 136 0.2294 0.2658 REMARK 3 15 2.1176 - 2.0695 1.00 2532 149 0.2303 0.2760 REMARK 3 16 2.0695 - 2.0254 1.00 2590 141 0.2372 0.3021 REMARK 3 17 2.0254 - 1.9849 1.00 2552 145 0.2451 0.2977 REMARK 3 18 1.9849 - 1.9475 1.00 2549 147 0.2559 0.3290 REMARK 3 19 1.9475 - 1.9127 1.00 2557 119 0.2575 0.3504 REMARK 3 20 1.9127 - 1.8803 1.00 2570 148 0.2797 0.2974 REMARK 3 21 1.8803 - 1.8500 1.00 2553 129 0.3017 0.3495 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 52.34 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.02410 REMARK 3 B22 (A**2) : 9.06300 REMARK 3 B33 (A**2) : -6.03900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5552 REMARK 3 ANGLE : 1.075 7597 REMARK 3 CHIRALITY : 0.071 892 REMARK 3 PLANARITY : 0.005 994 REMARK 3 DIHEDRAL : 13.437 2071 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57457 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 24.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 2% PEG 8K, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.05450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.18300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.05450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.18300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -246.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 ASP B 35 REMARK 465 LEU B 362 REMARK 465 ARG B 363 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 91 NH1 ARG B 96 1.98 REMARK 500 OD1 ASP A 323 O HOH A 633 2.04 REMARK 500 N ASN A 312 O HOH A 698 2.05 REMARK 500 OE1 GLN B 278 O HOH B 646 2.13 REMARK 500 NH1 ARG A 254 OD2 ASP A 301 2.16 REMARK 500 OD2 ASP B 253 O HOH B 714 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -146.26 -141.82 REMARK 500 TRP A 69 53.19 -141.66 REMARK 500 ARG A 108 127.04 -38.81 REMARK 500 TRP A 131 -147.89 -93.10 REMARK 500 GLU A 159 -133.72 51.74 REMARK 500 ARG A 207 -154.16 43.60 REMARK 500 ALA A 259 115.35 -5.63 REMARK 500 ILE A 260 -91.08 -103.40 REMARK 500 LEU A 262 75.35 -109.53 REMARK 500 MET A 272 -57.84 -127.62 REMARK 500 SER A 274 9.34 -153.44 REMARK 500 TYR A 309 -148.95 -134.29 REMARK 500 VAL A 351 -55.26 -120.41 REMARK 500 SER B 61 -151.79 -147.70 REMARK 500 ARG B 108 118.69 -39.01 REMARK 500 THR B 128 -168.12 -111.41 REMARK 500 TRP B 131 -150.25 -95.36 REMARK 500 GLU B 159 -130.09 49.42 REMARK 500 HIS B 230 18.99 57.84 REMARK 500 TYR B 309 -155.83 -128.42 REMARK 500 VAL B 351 -58.36 -122.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 665 DISTANCE = 5.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 717 O REMARK 620 2 HIS B 57 NE2 112.3 REMARK 620 3 HIS B 55 NE2 101.2 124.2 REMARK 620 4 ASP B 301 OD1 146.8 84.9 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 ASP A 301 OD2 103.2 REMARK 620 3 HIS A 230 NE2 124.7 96.1 REMARK 620 4 HOH A 703 O 95.9 126.8 112.5 REMARK 620 5 HOH A 701 O 135.4 79.9 98.6 53.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 703 O REMARK 620 2 HIS A 57 NE2 124.0 REMARK 620 3 HOH A 701 O 64.5 124.2 REMARK 620 4 ASP A 301 OD1 149.2 84.7 91.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 301 OD2 REMARK 620 2 HIS B 230 NE2 97.8 REMARK 620 3 HIS B 55 NE2 122.7 105.0 REMARK 620 4 HOH B 717 O 120.7 108.7 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 703 O REMARK 620 2 HOH A 724 O 91.3 REMARK 620 3 HOH A 701 O 58.4 56.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 230 NE2 REMARK 620 2 HOH B 717 O 104.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E3T RELATED DB: PDB REMARK 900 ROUND 18 ARYLESTERASE VARIANT OF PHOSPHOTRIESTERASE WITH REMARK 900 BOUND TRANSITION STATE ANALOG REMARK 900 RELATED ID: 4GY1 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN IS GENBANK, AFL46607. DBREF 4GY0 A 33 365 PDB 4GY0 4GY0 33 365 DBREF 4GY0 B 33 365 PDB 4GY0 4GY0 33 365 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE LYS VAL ALA ILE THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 A 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 B 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 B 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 B 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 B 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 B 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 B 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 B 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 B 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 B 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 B 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 B 333 ILE ARG ALA GLY ILE ILE LYS VAL ALA ILE THR GLY LYS SEQRES 12 B 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 B 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 B 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 B 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 B 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 B 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 B 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 B 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 B 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 B 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 B 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 B 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 B 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 B 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 B 333 LEU SER PRO THR LEU ARG ALA SER HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HETNAM ZN ZINC ION FORMUL 3 ZN 6(ZN 2+) FORMUL 9 HOH *450(H2 O) HELIX 1 1 THR A 45 VAL A 49 5 5 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 MET A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 GLY A 208 GLU A 219 1 12 HELIX 11 11 SER A 222 SER A 224 5 3 HELIX 12 12 HIS A 230 THR A 234 5 5 HELIX 13 13 ASP A 236 GLY A 247 1 12 HELIX 14 14 ARG A 254 ALA A 259 5 6 HELIX 15 15 SER A 276 GLN A 290 1 15 HELIX 16 16 TYR A 292 LYS A 294 5 3 HELIX 17 17 ASN A 312 ASN A 321 1 10 HELIX 18 18 ASP A 323 MET A 325 5 3 HELIX 19 19 ALA A 326 ARG A 331 1 6 HELIX 20 20 ARG A 331 LYS A 339 1 9 HELIX 21 21 PRO A 342 VAL A 351 1 10 HELIX 22 22 VAL A 351 SER A 359 1 9 HELIX 23 23 THR B 45 GLY B 50 1 6 HELIX 24 24 GLY B 64 TRP B 69 1 6 HELIX 25 25 PRO B 70 GLY B 74 5 5 HELIX 26 26 SER B 75 ALA B 93 1 19 HELIX 27 27 THR B 103 GLY B 107 5 5 HELIX 28 28 ASP B 109 ASP B 121 1 13 HELIX 29 29 PRO B 135 MET B 140 1 6 HELIX 30 30 SER B 142 TYR B 156 1 15 HELIX 31 31 THR B 177 GLY B 195 1 19 HELIX 32 32 GLY B 208 GLU B 219 1 12 HELIX 33 33 SER B 222 SER B 224 5 3 HELIX 34 34 HIS B 230 THR B 234 5 5 HELIX 35 35 ASP B 236 ARG B 246 1 11 HELIX 36 36 ASN B 265 GLY B 273 1 9 HELIX 37 37 SER B 276 ASP B 289 1 14 HELIX 38 38 TYR B 292 LYS B 294 5 3 HELIX 39 39 ASN B 312 ASN B 321 1 10 HELIX 40 40 ASP B 323 MET B 325 5 3 HELIX 41 41 ALA B 326 LYS B 339 1 14 HELIX 42 42 PRO B 342 VAL B 351 1 10 HELIX 43 43 VAL B 351 SER B 359 1 9 SHEET 1 A 2 ILE A 37 THR A 39 0 SHEET 2 A 2 GLY A 42 ILE A 44 -1 O ILE A 44 N ILE A 37 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O VAL A 125 N ILE A 98 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 ILE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 6 ALA A 127 VAL A 130 0 SHEET 2 D 6 ILE A 167 THR A 173 1 O LYS A 169 N THR A 128 SHEET 3 D 6 VAL A 198 ALA A 203 1 O ALA A 203 N ILE A 172 SHEET 4 D 6 VAL A 226 ILE A 228 1 O CYS A 227 N VAL A 198 SHEET 5 D 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 D 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 E 2 ILE B 37 THR B 39 0 SHEET 2 E 2 GLY B 42 ILE B 44 -1 O ILE B 44 N ILE B 37 SHEET 1 F 3 THR B 52 GLU B 56 0 SHEET 2 F 3 THR B 97 ASP B 100 1 O THR B 97 N LEU B 53 SHEET 3 F 3 HIS B 123 VAL B 125 1 O VAL B 125 N ASP B 100 SHEET 1 G 2 CYS B 59 GLY B 60 0 SHEET 2 G 2 GLY B 305 ILE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 H 6 ALA B 127 VAL B 130 0 SHEET 2 H 6 ILE B 167 VAL B 170 1 O LYS B 169 N THR B 128 SHEET 3 H 6 VAL B 198 THR B 200 1 O ILE B 199 N ILE B 168 SHEET 4 H 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 H 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 H 6 ILE B 296 VAL B 298 1 O LEU B 297 N ILE B 250 LINK ZN A ZN B 401 O HOH B 717 1555 1555 1.89 LINK NE2 HIS A 55 ZN B ZN A 403 1555 1555 1.94 LINK ZN A ZN A 401 O HOH A 703 1555 1555 1.98 LINK OD2BASP A 301 ZN B ZN A 403 1555 1555 2.04 LINK NE2 HIS A 230 ZN B ZN A 403 1555 1555 2.05 LINK OD2BASP B 301 ZN B ZN B 403 1555 1555 2.10 LINK NE2 HIS A 57 ZN A ZN A 401 1555 1555 2.12 LINK NE2 HIS B 57 ZN A ZN B 401 1555 1555 2.18 LINK NE2BHIS B 230 ZN B ZN B 403 1555 1555 2.22 LINK ZN A ZN A 402 O HOH A 703 1555 1555 2.26 LINK NE2BHIS B 55 ZN B ZN B 403 1555 1555 2.31 LINK ZN A ZN A 401 O HOH A 701 1555 1555 2.33 LINK OD1AASP A 301 ZN A ZN A 401 1555 1555 2.34 LINK ZN A ZN A 402 O HOH A 724 1555 1555 2.35 LINK NE2AHIS B 230 ZN A ZN B 402 1555 1555 2.44 LINK ZN B ZN B 403 O HOH B 717 1555 1555 2.48 LINK ZN A ZN A 402 O HOH A 701 1555 1555 2.48 LINK NE2AHIS B 55 ZN A ZN B 401 1555 1555 2.56 LINK ZN B ZN A 403 O HOH A 703 1555 1555 2.58 LINK ZN A ZN B 402 O HOH B 717 1555 1555 2.59 LINK ZN B ZN A 403 O HOH A 701 1555 1555 2.60 LINK OD1AASP B 301 ZN A ZN B 401 1555 1555 2.65 SITE 1 AC1 6 HIS A 55 HIS A 57 ASP A 301 ZN A 403 SITE 2 AC1 6 HOH A 701 HOH A 703 SITE 1 AC2 6 HIS A 201 HIS A 230 ZN A 403 HOH A 701 SITE 2 AC2 6 HOH A 703 HOH A 724 SITE 1 AC3 7 HIS A 55 HIS A 230 ASP A 301 ZN A 401 SITE 2 AC3 7 ZN A 402 HOH A 701 HOH A 703 SITE 1 AC4 5 HIS B 55 HIS B 57 ASP B 301 ZN B 403 SITE 2 AC4 5 HOH B 717 SITE 1 AC5 5 LYS B 169 HIS B 201 HIS B 230 ZN B 403 SITE 2 AC5 5 HOH B 717 SITE 1 AC6 6 HIS B 55 HIS B 230 ASP B 301 ZN B 401 SITE 2 AC6 6 ZN B 402 HOH B 717 CRYST1 86.109 86.366 89.192 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011212 0.00000 MASTER 389 0 6 43 26 0 12 6 0 0 0 52 END