HEADER OXIDOREDUCTASE 03-SEP-12 4GWK TITLE CRYSTAL STRUCTURE OF 6-PHOSPHOGLUCONATE DEHYDROGENASE COMPLEXED WITH TITLE 2 3-PHOSPHOGLYCERIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PGD, PGDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 6-PHOSPHOGLUCONATE DEHYDROGENASE, 3-PHOSPHOGLYCERATE, DEHYDROGENASE, KEYWDS 2 NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HE,L.ZHOU,L.ZHANG REVDAT 1 28-NOV-12 4GWK 0 JRNL AUTH T.HITOSUGI,L.ZHOU,S.ELF,J.FAN,H.B.KANG,J.H.SEO,C.SHAN,Q.DAI, JRNL AUTH 2 L.ZHANG,J.XIE,T.L.GU,P.JIN,M.ALECKOVIC,G.LEROY,Y.KANG, JRNL AUTH 3 J.A.SUDDERTH,R.J.DEBERARDINIS,C.H.LUAN,G.Z.CHEN,S.MULLER, JRNL AUTH 4 D.M.SHIN,T.K.OWONIKOKO,S.LONIAL,M.L.ARELLANO,H.J.KHOURY, JRNL AUTH 5 F.R.KHURI,B.H.LEE,K.YE,T.J.BOGGON,S.KANG,C.HE,J.CHEN JRNL TITL PHOSPHOGLYCERATE MUTASE 1 COORDINATES GLYCOLYSIS AND JRNL TITL 2 BIOSYNTHESIS TO PROMOTE TUMOR GROWTH. JRNL REF CANCER CELL V. 22 585 2012 JRNL REFN ISSN 1535-6108 JRNL PMID 23153533 JRNL DOI 10.1016/J.CCR.2012.09.020 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 75623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0431 - 4.5961 0.98 2879 132 0.1836 0.1764 REMARK 3 2 4.5961 - 3.6504 0.99 2745 151 0.1429 0.1392 REMARK 3 3 3.6504 - 3.1896 1.00 2738 138 0.1562 0.1408 REMARK 3 4 3.1896 - 2.8983 1.00 2672 166 0.1691 0.1650 REMARK 3 5 2.8983 - 2.6907 1.00 2698 153 0.1733 0.1984 REMARK 3 6 2.6907 - 2.5321 1.00 2679 137 0.1700 0.1856 REMARK 3 7 2.5321 - 2.4054 1.00 2675 152 0.1643 0.1966 REMARK 3 8 2.4054 - 2.3007 1.00 2645 144 0.1671 0.1725 REMARK 3 9 2.3007 - 2.2122 1.00 2675 141 0.1691 0.1583 REMARK 3 10 2.2122 - 2.1359 1.00 2661 137 0.1703 0.1802 REMARK 3 11 2.1359 - 2.0691 1.00 2655 146 0.1716 0.1915 REMARK 3 12 2.0691 - 2.0100 1.00 2659 144 0.1742 0.1805 REMARK 3 13 2.0100 - 1.9571 1.00 2631 154 0.1644 0.1606 REMARK 3 14 1.9571 - 1.9093 1.00 2651 130 0.1655 0.1784 REMARK 3 15 1.9093 - 1.8659 1.00 2658 130 0.1708 0.1645 REMARK 3 16 1.8659 - 1.8262 1.00 2641 139 0.1690 0.1742 REMARK 3 17 1.8262 - 1.7897 1.00 2643 130 0.1703 0.1725 REMARK 3 18 1.7897 - 1.7560 1.00 2662 121 0.1725 0.1800 REMARK 3 19 1.7560 - 1.7246 1.00 2624 142 0.1772 0.2045 REMARK 3 20 1.7246 - 1.6954 1.00 2642 145 0.1859 0.1780 REMARK 3 21 1.6954 - 1.6680 1.00 2597 151 0.1846 0.2095 REMARK 3 22 1.6680 - 1.6424 1.00 2643 136 0.1882 0.2016 REMARK 3 23 1.6424 - 1.6182 1.00 2614 152 0.1959 0.1994 REMARK 3 24 1.6182 - 1.5954 1.00 2638 144 0.2001 0.2023 REMARK 3 25 1.5954 - 1.5739 1.00 2626 132 0.2096 0.2155 REMARK 3 26 1.5739 - 1.5534 1.00 2608 138 0.2331 0.2662 REMARK 3 27 1.5534 - 1.5340 0.97 2559 120 0.2464 0.2821 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 37.90 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.98600 REMARK 3 B22 (A**2) : -0.98600 REMARK 3 B33 (A**2) : 1.97200 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3807 REMARK 3 ANGLE : 1.337 5151 REMARK 3 CHIRALITY : 0.096 560 REMARK 3 PLANARITY : 0.008 661 REMARK 3 DIHEDRAL : 13.271 1429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4GWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75680 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.534 REMARK 200 RESOLUTION RANGE LOW (A) : 72.517 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3FWN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG3350, PH 6.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.21200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.62300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.62300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 97.81800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.62300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.62300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.60600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.62300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.62300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 97.81800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.62300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.62300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.60600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 ASN A 1 REMARK 465 GLN A 308 REMARK 465 LYS A 309 REMARK 465 GLY A 471 REMARK 465 HIS A 472 REMARK 465 GLY A 473 REMARK 465 GLY A 474 REMARK 465 THR A 475 REMARK 465 VAL A 476 REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 465 SER A 479 REMARK 465 SER A 480 REMARK 465 TYR A 481 REMARK 465 ASN A 482 REMARK 465 ALA A 483 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 296 O HOH A 976 2.13 REMARK 500 OH TYR A 192 O3 3PG A 504 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 -179.77 -67.83 REMARK 500 ASN A 45 -79.59 -122.09 REMARK 500 ASN A 103 69.62 -100.53 REMARK 500 GLU A 177 -125.87 56.74 REMARK 500 THR A 454 -168.01 55.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 137 GLY A 138 141.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 11 21.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JKV RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT COFACTOR REMARK 900 RELATED ID: 4GWG RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT COFACTOR DBREF 4GWK A 2 483 UNP P52209 6PGD_HUMAN 2 483 SEQADV 4GWK SER A 0 UNP P52209 EXPRESSION TAG SEQADV 4GWK ASN A 1 UNP P52209 EXPRESSION TAG SEQRES 1 A 484 SER ASN ALA GLN ALA ASP ILE ALA LEU ILE GLY LEU ALA SEQRES 2 A 484 VAL MET GLY GLN ASN LEU ILE LEU ASN MET ASN ASP HIS SEQRES 3 A 484 GLY PHE VAL VAL CYS ALA PHE ASN ARG THR VAL SER LYS SEQRES 4 A 484 VAL ASP ASP PHE LEU ALA ASN GLU ALA LYS GLY THR LYS SEQRES 5 A 484 VAL VAL GLY ALA GLN SER LEU LYS GLU MET VAL SER LYS SEQRES 6 A 484 LEU LYS LYS PRO ARG ARG ILE ILE LEU LEU VAL LYS ALA SEQRES 7 A 484 GLY GLN ALA VAL ASP ASP PHE ILE GLU LYS LEU VAL PRO SEQRES 8 A 484 LEU LEU ASP THR GLY ASP ILE ILE ILE ASP GLY GLY ASN SEQRES 9 A 484 SER GLU TYR ARG ASP THR THR ARG ARG CYS ARG ASP LEU SEQRES 10 A 484 LYS ALA LYS GLY ILE LEU PHE VAL GLY SER GLY VAL SER SEQRES 11 A 484 GLY GLY GLU GLU GLY ALA ARG TYR GLY PRO SER LEU MET SEQRES 12 A 484 PRO GLY GLY ASN LYS GLU ALA TRP PRO HIS ILE LYS THR SEQRES 13 A 484 ILE PHE GLN GLY ILE ALA ALA LYS VAL GLY THR GLY GLU SEQRES 14 A 484 PRO CYS CYS ASP TRP VAL GLY ASP GLU GLY ALA GLY HIS SEQRES 15 A 484 PHE VAL LYS MET VAL HIS ASN GLY ILE GLU TYR GLY ASP SEQRES 16 A 484 MET GLN LEU ILE CYS GLU ALA TYR HIS LEU MET LYS ASP SEQRES 17 A 484 VAL LEU GLY MET ALA GLN ASP GLU MET ALA GLN ALA PHE SEQRES 18 A 484 GLU ASP TRP ASN LYS THR GLU LEU ASP SER PHE LEU ILE SEQRES 19 A 484 GLU ILE THR ALA ASN ILE LEU LYS PHE GLN ASP THR ASP SEQRES 20 A 484 GLY LYS HIS LEU LEU PRO LYS ILE ARG ASP SER ALA GLY SEQRES 21 A 484 GLN LYS GLY THR GLY LYS TRP THR ALA ILE SER ALA LEU SEQRES 22 A 484 GLU TYR GLY VAL PRO VAL THR LEU ILE GLY GLU ALA VAL SEQRES 23 A 484 PHE ALA ARG CYS LEU SER SER LEU LYS ASP GLU ARG ILE SEQRES 24 A 484 GLN ALA SER LYS LYS LEU LYS GLY PRO GLN LYS PHE GLN SEQRES 25 A 484 PHE ASP GLY ASP LYS LYS SER PHE LEU GLU ASP ILE ARG SEQRES 26 A 484 LYS ALA LEU TYR ALA SER LYS ILE ILE SER TYR ALA GLN SEQRES 27 A 484 GLY PHE MET LEU LEU ARG GLN ALA ALA THR GLU PHE GLY SEQRES 28 A 484 TRP THR LEU ASN TYR GLY GLY ILE ALA LEU MET TRP ARG SEQRES 29 A 484 GLY GLY CYS ILE ILE ARG SER VAL PHE LEU GLY LYS ILE SEQRES 30 A 484 LYS ASP ALA PHE ASP ARG ASN PRO GLU LEU GLN ASN LEU SEQRES 31 A 484 LEU LEU ASP ASP PHE PHE LYS SER ALA VAL GLU ASN CYS SEQRES 32 A 484 GLN ASP SER TRP ARG ARG ALA VAL SER THR GLY VAL GLN SEQRES 33 A 484 ALA GLY ILE PRO MET PRO CYS PHE THR THR ALA LEU SER SEQRES 34 A 484 PHE TYR ASP GLY TYR ARG HIS GLU MET LEU PRO ALA SER SEQRES 35 A 484 LEU ILE GLN ALA GLN ARG ASP TYR PHE GLY ALA HIS THR SEQRES 36 A 484 TYR GLU LEU LEU ALA LYS PRO GLY GLN PHE ILE HIS THR SEQRES 37 A 484 ASN TRP THR GLY HIS GLY GLY THR VAL SER SER SER SER SEQRES 38 A 484 TYR ASN ALA HET 3PG A 501 11 HET MES A 502 12 HET MES A 503 12 HET 3PG A 504 11 HETNAM 3PG 3-PHOSPHOGLYCERIC ACID HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 3PG 2(C3 H7 O7 P) FORMUL 3 MES 2(C6 H13 N O4 S) FORMUL 6 HOH *411(H2 O) HELIX 1 1 ALA A 12 HIS A 25 1 14 HELIX 2 2 VAL A 36 ASN A 45 1 10 HELIX 3 3 SER A 57 LYS A 64 1 8 HELIX 4 4 GLY A 78 VAL A 89 1 12 HELIX 5 5 PRO A 90 LEU A 92 5 3 HELIX 6 6 GLU A 105 LYS A 119 1 15 HELIX 7 7 GLY A 130 GLY A 138 1 9 HELIX 8 8 ALA A 149 ALA A 161 1 13 HELIX 9 9 GLY A 178 VAL A 208 1 31 HELIX 10 10 ALA A 212 ASN A 224 1 13 HELIX 11 11 SER A 230 PHE A 242 1 13 HELIX 12 12 LEU A 250 ILE A 254 5 5 HELIX 13 13 GLY A 264 GLY A 275 1 12 HELIX 14 14 VAL A 278 SER A 292 1 15 HELIX 15 15 LEU A 293 LYS A 302 1 10 HELIX 16 16 ASP A 315 GLY A 350 1 36 HELIX 17 17 ASN A 354 TRP A 362 1 9 HELIX 18 18 SER A 370 ASN A 383 1 14 HELIX 19 19 ASN A 388 LEU A 391 5 4 HELIX 20 20 ASP A 392 GLY A 417 1 26 HELIX 21 21 MET A 420 ARG A 434 1 15 HELIX 22 22 PRO A 439 ALA A 452 1 14 SHEET 1 A 8 VAL A 53 GLY A 54 0 SHEET 2 A 8 VAL A 29 PHE A 32 1 N ALA A 31 O VAL A 53 SHEET 3 A 8 ILE A 6 ILE A 9 1 N ILE A 6 O CYS A 30 SHEET 4 A 8 ARG A 70 LEU A 73 1 O ILE A 72 N ILE A 9 SHEET 5 A 8 ILE A 97 ASP A 100 1 O ILE A 99 N LEU A 73 SHEET 6 A 8 LEU A 122 SER A 129 1 O VAL A 124 N ASP A 100 SHEET 7 A 8 SER A 140 GLY A 145 -1 O SER A 140 N SER A 129 SHEET 8 A 8 GLY A 175 ASP A 176 1 O GLY A 175 N GLY A 145 SHEET 1 B 2 TYR A 455 LEU A 457 0 SHEET 2 B 2 LYS A 460 ILE A 465 -1 O ILE A 465 N TYR A 455 CISPEP 1 LYS A 67 PRO A 68 0 -2.58 SITE 1 AC1 8 ALA A 212 GLN A 213 LYS A 248 HIS A 249 SITE 2 AC1 8 PRO A 252 HOH A 682 HOH A 757 HOH A 895 SITE 1 AC2 7 GLU A 105 ARG A 107 MET A 185 TRP A 266 SITE 2 AC2 7 HOH A 625 HOH A 639 HOH A 689 SITE 1 AC3 6 GLY A 131 GLU A 132 GLY A 167 GLU A 168 SITE 2 AC3 6 GLY A 451 ALA A 452 SITE 1 AC4 11 GLU A 191 TYR A 192 LYS A 261 GLY A 262 SITE 2 AC4 11 THR A 263 ARG A 288 ARG A 447 HOH A 628 SITE 3 AC4 11 HOH A 651 HOH A 793 HOH A 817 CRYST1 87.246 87.246 130.424 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011462 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011462 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007667 0.00000 MASTER 354 0 4 22 10 0 9 6 0 0 0 38 END