HEADER IMMUNE SYSTEM 23-AUG-12 4GQP TITLE STRUCTURE BASED DESIGN OF SUB-NANOMOLAR AFFINITY ANTI-METHAMPHETAMINE TITLE 2 SINGLE CHAIN ANTIBODIES. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-METH SCFV; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4919; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: X33; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPICZ ALPHA KEYWDS ANTIBODY METH COMPLEX, IMMUNOGLOBULIN FOLD, ANTI-METH SINGLE CHAIN KEYWDS 2 ANTIBODY, FREE METH CONCENTRATION, METHAMPHETAMINE, VASCULATURE, KEYWDS 3 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.THAKKAR,K.I.VARUGHESE REVDAT 3 02-MAY-18 4GQP 1 REMARK REVDAT 2 05-FEB-14 4GQP 1 JRNL REVDAT 1 02-OCT-13 4GQP 0 JRNL AUTH S.THAKKAR,N.NANAWARE-KHARADE,R.CELIKEL,E.C.PETERSON, JRNL AUTH 2 K.I.VARUGHESE JRNL TITL AFFINITY IMPROVEMENT OF A THERAPEUTIC ANTIBODY TO JRNL TITL 2 METHAMPHETAMINE AND AMPHETAMINE THROUGH STRUCTURE-BASED JRNL TITL 3 ANTIBODY ENGINEERING. JRNL REF SCI REP V. 4 3673 2014 JRNL REFN ESSN 2045-2322 JRNL PMID 24419156 JRNL DOI 10.1038/SREP03673 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13554 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 719 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 997 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1756 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.145 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1812 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2440 ; 1.987 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 7.461 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;35.737 ;23.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 283 ;16.957 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;21.744 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 268 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1321 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1134 ; 1.210 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 2.039 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 678 ; 3.148 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 631 ; 4.360 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 1106 REMARK 3 RESIDUE RANGE : H 1201 H 1201 REMARK 3 RESIDUE RANGE : H 1301 H 1379 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5851 -2.2075 13.6952 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0525 REMARK 3 T33: 0.0524 T12: 0.0018 REMARK 3 T13: 0.0052 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.1209 L22: 1.5502 REMARK 3 L33: 0.3190 L12: 0.1728 REMARK 3 L13: 0.0889 L23: -0.4444 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0013 S13: -0.0087 REMARK 3 S21: 0.0795 S22: -0.0303 S23: -0.0611 REMARK 3 S31: -0.0224 S32: 0.0050 S33: 0.0141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4GQP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : RH COATED FLAT MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14299 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 34.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 3GKZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.917 M SODIUM CITRATE, PH 8.2, 0.324 REMARK 280 M IMIDAZOLE-MALATE, PH 8.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 287.15K, PH 8.25 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.63250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 992 REMARK 465 GLY H 993 REMARK 465 GLY H 994 REMARK 465 GLY H 995 REMARK 465 SER H 996 REMARK 465 GLY H 997 REMARK 465 GLY H 998 REMARK 465 GLY H 999 REMARK 465 GLY H 1000 REMARK 465 SER H 1001F REMARK 465 GLY H 1001E REMARK 465 ARG H 1107 REMARK 465 ALA H 1108 REMARK 465 PRO H 1109 REMARK 465 HIS H 1110 REMARK 465 HIS H 1111 REMARK 465 HIS H 1112 REMARK 465 HIS H 1113 REMARK 465 HIS H 1114 REMARK 465 HIS H 1115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS H 82A C SER H 82B N 0.218 REMARK 500 SER H 82B C VAL H 82C N 0.287 REMARK 500 CYS H 92 CB CYS H 92 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS H 82A O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 ILE H1106 O - C - N ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -6.48 66.63 REMARK 500 SER H 31 -175.48 -173.62 REMARK 500 ASN H 43 6.51 94.22 REMARK 500 SER H 65 -15.58 79.03 REMARK 500 THR H1051 -44.90 70.75 REMARK 500 GLU H1081 -7.42 -59.68 REMARK 500 ALA H1084 174.39 176.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE B40 H 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GKZ RELATED DB: PDB REMARK 900 THE WILD TYPE OF ANTI-METH SCFV REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE NUMBERS FOR THIS ENTRY FOLLOW THE KABAT NUMBERING REMARK 999 SCHEME. NUMBERING 1-112 CORRESPONDS TO THE HEAVY CHAIN AND 1001- REMARK 999 1112 TO THE LIGHT CHAIN. DBREF 4GQP H 1 1115 PDB 4GQP 4GQP 1 1115 SEQRES 1 H 249 GLU VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS SEQRES 2 H 249 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY SEQRES 3 H 249 ASP SER VAL THR SER GLY TYR TRP SER TRP ILE ARG GLN SEQRES 4 H 249 PHE PRO GLY ASN LYS LEU ASP TYR MET GLY TYR ILE SER SEQRES 5 H 249 TYR ARG GLY SER THR TYR TYR ASN PRO SER LEU LYS SER SEQRES 6 H 249 ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN VAL SEQRES 7 H 249 TYR LEU GLN LEU LYS SER VAL SER SER GLU ASP THR ALA SEQRES 8 H 249 THR TYR TYR CYS THR TYR PHE ASP SER ASP ASP TYR ALA SEQRES 9 H 249 MET GLU TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SEQRES 10 H 249 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 11 H 249 GLY SER GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET SEQRES 12 H 249 SER ALA SER PRO GLY GLU LYS VAL THR LEU THR CYS SER SEQRES 13 H 249 ALA SER SER SER VAL SER SER SER HIS LEU TYR TRP TYR SEQRES 14 H 249 GLN GLN LYS PRO GLY SER SER PRO LYS LEU TRP ILE TYR SEQRES 15 H 249 SER THR SER ASN LEU ALA SER GLY VAL PRO ALA ARG PHE SEQRES 16 H 249 SER GLY SER GLY SER GLY THR SER TYR SER LEU THR ILE SEQRES 17 H 249 SER SER MET GLU ALA GLU ASP ALA ALA SER TYR PHE CYS SEQRES 18 H 249 HIS GLN TRP SER SER PHE PRO PHE THR PHE GLY SER GLY SEQRES 19 H 249 THR LYS LEU GLU ILE LYS ARG ALA PRO HIS HIS HIS HIS SEQRES 20 H 249 HIS HIS HET B40 H1201 11 HETNAM B40 (2S)-N-METHYL-1-PHENYLPROPAN-2-AMINE HETSYN B40 METHAMPHETAMINE FORMUL 2 B40 C10 H15 N FORMUL 3 HOH *79(H2 O) HELIX 1 1 THR H 73 LYS H 75 5 3 HELIX 2 2 SER H 83 THR H 87 5 5 HELIX 3 3 SER H 1029 SER H 1031 5 3 HELIX 4 4 GLU H 1079 ALA H 1083 5 5 SHEET 1 A 4 VAL H 2 SER H 7 0 SHEET 2 A 4 LEU H 18 GLY H 26 -1 O THR H 25 N GLN H 3 SHEET 3 A 4 GLN H 77 LEU H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 A 4 ILE H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 B 6 LEU H 11 VAL H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 B 6 ALA H 88 PHE H 95 -1 N TYR H 90 O THR H 107 SHEET 4 B 6 TYR H 33 GLN H 39 -1 N GLN H 39 O THR H 89 SHEET 5 B 6 LEU H 45 SER H 52 -1 O ILE H 51 N TRP H 34 SHEET 6 B 6 THR H 57 TYR H 59 -1 O TYR H 58 N TYR H 50 SHEET 1 C 4 LEU H 11 VAL H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 C 4 ALA H 88 PHE H 95 -1 N TYR H 90 O THR H 107 SHEET 4 C 4 GLU H 101 TRP H 103 -1 O TYR H 102 N TYR H 94 SHEET 1 D 4 LEU H1004 THR H1005 0 SHEET 2 D 4 VAL H1019 ALA H1025 -1 O SER H1024 N THR H1005 SHEET 3 D 4 SER H1070 ILE H1075 -1 O LEU H1073 N LEU H1021 SHEET 4 D 4 PHE H1062 SER H1067 -1 N SER H1065 O SER H1072 SHEET 1 E 6 ILE H1010 ALA H1013 0 SHEET 2 E 6 THR H1102 ILE H1106 1 O GLU H1105 N MET H1011 SHEET 3 E 6 ALA H1084 GLN H1090 -1 N ALA H1084 O LEU H1104 SHEET 4 E 6 LEU H1033 GLN H1038 -1 N TYR H1034 O HIS H1089 SHEET 5 E 6 LYS H1045 TYR H1049 -1 O TRP H1047 N TRP H1035 SHEET 6 E 6 ASN H1053 LEU H1054 -1 O ASN H1053 N TYR H1049 SHEET 1 F 4 ILE H1010 ALA H1013 0 SHEET 2 F 4 THR H1102 ILE H1106 1 O GLU H1105 N MET H1011 SHEET 3 F 4 ALA H1084 GLN H1090 -1 N ALA H1084 O LEU H1104 SHEET 4 F 4 THR H1097 PHE H1098 -1 O THR H1097 N GLN H1090 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.10 SSBOND 2 CYS H 1023 CYS H 1088 1555 1555 2.15 CISPEP 1 SER H 1007 PRO H 1008 0 -0.70 CISPEP 2 PHE H 1094 PRO H 1095 0 -3.39 SITE 1 AC1 10 TYR H 33 SER H 35 TYR H 47 TYR H 50 SITE 2 AC1 10 PHE H 95 GLU H 101 TYR H1034 TYR H1036 SITE 3 AC1 10 HIS H1089 TRP H1091 CRYST1 34.516 65.265 48.483 90.00 98.20 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028972 0.000000 0.004175 0.00000 SCALE2 0.000000 0.015322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020839 0.00000 MASTER 355 0 1 4 28 0 3 6 0 0 0 20 END