HEADER SIGNALING PROTEIN 20-AUG-12 4GOK TITLE THE CRYSTAL STRUCTURE OF ARL2GPPNHP IN COMPLEX WITH UNC119A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN UNC-119 HOMOLOG A; COMPND 8 CHAIN: G, C; COMPND 9 SYNONYM: RETINAL PROTEIN 4, HRG4; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UNC119, RG4; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SMALL G PROTEINS, ARL, ARF, GDI-LIKE SOLUBILIZING FACTORS, CILIA, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.ISMAIL,Y.XIANG-CHEN,M.MIERTZSCHKE,I.VETTER,C.KOERNER,A.WITTINGHOFER REVDAT 2 31-OCT-12 4GOK 1 JRNL REVDAT 1 19-SEP-12 4GOK 0 JRNL AUTH S.A.ISMAIL,Y.X.CHEN,M.MIERTZSCHKE,I.R.VETTER,C.KOERNER, JRNL AUTH 2 A.WITTINGHOFER JRNL TITL STRUCTURAL BASIS FOR ARL3-SPECIFIC RELEASE OF MYRISTOYLATED JRNL TITL 2 CILIARY CARGO FROM UNC119. JRNL REF EMBO J. V. 31 4085 2012 JRNL REFN ISSN 0261-4189 JRNL PMID 22960633 JRNL DOI 10.1038/EMBOJ.2012.257 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0093 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1331 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1751 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.64000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.713 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.871 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5334 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7215 ; 1.714 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 627 ; 7.040 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 263 ;37.857 ;23.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 913 ;18.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;21.909 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 783 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4016 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4GOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB074443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SAGITALLY - HORIZONTALLY FOCUSED REMARK 200 SI(111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.980 REMARK 200 R MERGE (I) : 0.21900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1KSH, 3GQQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% PEG400 AND 2M AMMONIUM SULFATE, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.72500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.54000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.72500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.54000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 16 REMARK 465 ASN B 37 REMARK 465 GLY B 38 REMARK 465 GLU B 39 REMARK 465 ASP B 40 REMARK 465 VAL B 41 REMARK 465 ASP B 42 REMARK 465 VAL B 180 REMARK 465 PHE B 181 REMARK 465 THR B 182 REMARK 465 ALA B 183 REMARK 465 ASP B 184 REMARK 465 MET G 1 REMARK 465 LYS G 2 REMARK 465 VAL G 3 REMARK 465 LYS G 4 REMARK 465 LYS G 5 REMARK 465 GLY G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 GLY G 9 REMARK 465 ALA G 10 REMARK 465 GLY G 11 REMARK 465 THR G 12 REMARK 465 ALA G 13 REMARK 465 THR G 14 REMARK 465 GLU G 15 REMARK 465 SER G 16 REMARK 465 ALA G 17 REMARK 465 PRO G 18 REMARK 465 GLY G 19 REMARK 465 PRO G 20 REMARK 465 SER G 21 REMARK 465 GLY G 22 REMARK 465 GLN G 23 REMARK 465 SER G 24 REMARK 465 VAL G 25 REMARK 465 ALA G 26 REMARK 465 PRO G 27 REMARK 465 ILE G 28 REMARK 465 PRO G 29 REMARK 465 GLN G 30 REMARK 465 PRO G 31 REMARK 465 PRO G 32 REMARK 465 ALA G 33 REMARK 465 GLU G 34 REMARK 465 SER G 35 REMARK 465 GLU G 36 REMARK 465 SER G 37 REMARK 465 GLY G 38 REMARK 465 SER G 39 REMARK 465 GLU G 40 REMARK 465 SER G 41 REMARK 465 GLU G 42 REMARK 465 PRO G 43 REMARK 465 ASP G 44 REMARK 465 ALA G 45 REMARK 465 GLY G 46 REMARK 465 PRO G 47 REMARK 465 GLY G 48 REMARK 465 PRO G 49 REMARK 465 ARG G 50 REMARK 465 PRO G 51 REMARK 465 GLY G 52 REMARK 465 PRO G 53 REMARK 465 LEU G 54 REMARK 465 GLN G 55 REMARK 465 ARG G 56 REMARK 465 LYS G 57 REMARK 465 GLN G 58 REMARK 465 VAL G 110 REMARK 465 SER G 111 REMARK 465 GLU G 112 REMARK 465 ARG G 113 REMARK 465 LEU G 114 REMARK 465 PRO G 115 REMARK 465 ILE G 116 REMARK 465 ASN G 117 REMARK 465 ARG G 118 REMARK 465 ARG G 119 REMARK 465 ASP G 120 REMARK 465 LEU G 121 REMARK 465 ASP G 122 REMARK 465 PRO G 123 REMARK 465 ASP G 195 REMARK 465 PHE G 196 REMARK 465 PRO G 197 REMARK 465 PRO G 198 REMARK 465 GLY G 238 REMARK 465 THR G 239 REMARK 465 PRO G 240 REMARK 465 MET A 16 REMARK 465 GLY A 38 REMARK 465 GLU A 39 REMARK 465 ASP A 40 REMARK 465 VAL A 41 REMARK 465 ASP A 42 REMARK 465 VAL A 180 REMARK 465 PHE A 181 REMARK 465 THR A 182 REMARK 465 ALA A 183 REMARK 465 ASP A 184 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 VAL C 3 REMARK 465 LYS C 4 REMARK 465 LYS C 5 REMARK 465 GLY C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 ALA C 10 REMARK 465 GLY C 11 REMARK 465 THR C 12 REMARK 465 ALA C 13 REMARK 465 THR C 14 REMARK 465 GLU C 15 REMARK 465 SER C 16 REMARK 465 ALA C 17 REMARK 465 PRO C 18 REMARK 465 GLY C 19 REMARK 465 PRO C 20 REMARK 465 SER C 21 REMARK 465 GLY C 22 REMARK 465 GLN C 23 REMARK 465 SER C 24 REMARK 465 VAL C 25 REMARK 465 ALA C 26 REMARK 465 PRO C 27 REMARK 465 ILE C 28 REMARK 465 PRO C 29 REMARK 465 GLN C 30 REMARK 465 PRO C 31 REMARK 465 PRO C 32 REMARK 465 ALA C 33 REMARK 465 GLU C 34 REMARK 465 SER C 35 REMARK 465 GLU C 36 REMARK 465 SER C 37 REMARK 465 GLY C 38 REMARK 465 SER C 39 REMARK 465 GLU C 40 REMARK 465 SER C 41 REMARK 465 GLU C 42 REMARK 465 PRO C 43 REMARK 465 ASP C 44 REMARK 465 ALA C 45 REMARK 465 GLY C 46 REMARK 465 PRO C 47 REMARK 465 GLY C 48 REMARK 465 PRO C 49 REMARK 465 ARG C 50 REMARK 465 PRO C 51 REMARK 465 GLY C 52 REMARK 465 PRO C 53 REMARK 465 LEU C 54 REMARK 465 GLN C 55 REMARK 465 ARG C 56 REMARK 465 LYS C 57 REMARK 465 GLN C 58 REMARK 465 VAL C 110 REMARK 465 SER C 111 REMARK 465 GLU C 112 REMARK 465 ARG C 113 REMARK 465 LEU C 114 REMARK 465 PRO C 115 REMARK 465 ILE C 116 REMARK 465 ASN C 117 REMARK 465 ARG C 118 REMARK 465 ARG C 119 REMARK 465 ASP C 120 REMARK 465 LEU C 121 REMARK 465 ASP C 122 REMARK 465 PRO C 123 REMARK 465 ASP C 195 REMARK 465 PHE C 196 REMARK 465 PRO C 197 REMARK 465 PRO C 198 REMARK 465 GLY C 238 REMARK 465 THR C 239 REMARK 465 PRO C 240 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU G 81 CG CD OE1 OE2 REMARK 470 LYS G 106 CG CD CE NZ REMARK 470 ASN G 124 CG OD1 ND2 REMARK 470 ARG G 141 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 81 CG CD OE1 OE2 REMARK 470 LYS C 106 CG CD CE NZ REMARK 470 ASN C 124 CG OD1 ND2 REMARK 470 ARG C 141 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 30 MG MG A 202 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 70 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU A 70 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 26 5.42 80.94 REMARK 500 LEU B 48 74.91 -108.82 REMARK 500 ARG B 78 -19.25 -47.51 REMARK 500 PHE G 103 136.48 -172.04 REMARK 500 ALA G 125 131.90 -39.48 REMARK 500 HIS G 210 72.16 -112.55 REMARK 500 TYR G 212 6.53 59.78 REMARK 500 LEU A 48 73.39 -113.44 REMARK 500 PHE C 103 139.70 -172.12 REMARK 500 ALA C 125 131.97 -39.83 REMARK 500 HIS C 210 74.26 -115.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 30 OG1 REMARK 620 2 GNP B 201 O1G 176.7 REMARK 620 3 GNP B 201 O2B 87.5 95.8 REMARK 620 4 HOH B 302 O 81.0 98.7 88.0 REMARK 620 5 HOH B 301 O 113.3 66.5 101.5 162.9 REMARK 620 6 THR B 47 OG1 82.4 94.4 155.0 67.9 103.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GNP A 201 O2B REMARK 620 2 THR A 47 OG1 151.0 REMARK 620 3 HOH A 302 O 93.6 105.6 REMARK 620 4 HOH A 301 O 77.8 74.9 151.0 REMARK 620 5 GNP A 201 O1G 78.2 89.7 66.2 85.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GOJ RELATED DB: PDB DBREF 4GOK B 17 184 UNP Q9D0J4 ARL2_MOUSE 17 184 DBREF 4GOK G 1 240 UNP Q13432 U119A_HUMAN 1 240 DBREF 4GOK A 17 184 UNP Q9D0J4 ARL2_MOUSE 17 184 DBREF 4GOK C 1 240 UNP Q13432 U119A_HUMAN 1 240 SEQADV 4GOK MET B 16 UNP Q9D0J4 EXPRESSION TAG SEQADV 4GOK LEU B 70 UNP Q9D0J4 GLN 70 ENGINEERED MUTATION SEQADV 4GOK MET A 16 UNP Q9D0J4 EXPRESSION TAG SEQADV 4GOK LEU A 70 UNP Q9D0J4 GLN 70 ENGINEERED MUTATION SEQRES 1 B 169 MET LEU ARG LEU LEU MET LEU GLY LEU ASP ASN ALA GLY SEQRES 2 B 169 LYS THR THR ILE LEU LYS LYS PHE ASN GLY GLU ASP VAL SEQRES 3 B 169 ASP THR ILE SER PRO THR LEU GLY PHE ASN ILE LYS THR SEQRES 4 B 169 LEU GLU HIS ARG GLY PHE LYS LEU ASN ILE TRP ASP VAL SEQRES 5 B 169 GLY GLY LEU LYS SER LEU ARG SER TYR TRP ARG ASN TYR SEQRES 6 B 169 PHE GLU SER THR ASP GLY LEU ILE TRP VAL VAL ASP SER SEQRES 7 B 169 ALA ASP ARG GLN ARG MET GLN ASP CYS GLN ARG GLU LEU SEQRES 8 B 169 GLN SER LEU LEU VAL GLU GLU ARG LEU ALA GLY ALA THR SEQRES 9 B 169 LEU LEU ILE PHE ALA ASN LYS GLN ASP LEU PRO GLY ALA SEQRES 10 B 169 LEU SER CYS ASN ALA ILE GLN GLU ALA LEU GLU LEU ASP SEQRES 11 B 169 SER ILE ARG SER HIS HIS TRP ARG ILE GLN GLY CYS SER SEQRES 12 B 169 ALA VAL THR GLY GLU ASP LEU LEU PRO GLY ILE ASP TRP SEQRES 13 B 169 LEU LEU ASP ASP ILE SER SER ARG VAL PHE THR ALA ASP SEQRES 1 G 240 MET LYS VAL LYS LYS GLY GLY GLY GLY ALA GLY THR ALA SEQRES 2 G 240 THR GLU SER ALA PRO GLY PRO SER GLY GLN SER VAL ALA SEQRES 3 G 240 PRO ILE PRO GLN PRO PRO ALA GLU SER GLU SER GLY SER SEQRES 4 G 240 GLU SER GLU PRO ASP ALA GLY PRO GLY PRO ARG PRO GLY SEQRES 5 G 240 PRO LEU GLN ARG LYS GLN PRO ILE GLY PRO GLU ASP VAL SEQRES 6 G 240 LEU GLY LEU GLN ARG ILE THR GLY ASP TYR LEU CYS SER SEQRES 7 G 240 PRO GLU GLU ASN ILE TYR LYS ILE ASP PHE VAL ARG PHE SEQRES 8 G 240 LYS ILE ARG ASP MET ASP SER GLY THR VAL LEU PHE GLU SEQRES 9 G 240 ILE LYS LYS PRO PRO VAL SER GLU ARG LEU PRO ILE ASN SEQRES 10 G 240 ARG ARG ASP LEU ASP PRO ASN ALA GLY ARG PHE VAL ARG SEQRES 11 G 240 TYR GLN PHE THR PRO ALA PHE LEU ARG LEU ARG GLN VAL SEQRES 12 G 240 GLY ALA THR VAL GLU PHE THR VAL GLY ASP LYS PRO VAL SEQRES 13 G 240 ASN ASN PHE ARG MET ILE GLU ARG HIS TYR PHE ARG ASN SEQRES 14 G 240 GLN LEU LEU LYS SER PHE ASP PHE HIS PHE GLY PHE CYS SEQRES 15 G 240 ILE PRO SER SER LYS ASN THR CYS GLU HIS ILE TYR ASP SEQRES 16 G 240 PHE PRO PRO LEU SER GLU GLU LEU ILE SER GLU MET ILE SEQRES 17 G 240 ARG HIS PRO TYR GLU THR GLN SER ASP SER PHE TYR PHE SEQRES 18 G 240 VAL ASP ASP ARG LEU VAL MET HIS ASN LYS ALA ASP TYR SEQRES 19 G 240 SER TYR SER GLY THR PRO SEQRES 1 A 169 MET LEU ARG LEU LEU MET LEU GLY LEU ASP ASN ALA GLY SEQRES 2 A 169 LYS THR THR ILE LEU LYS LYS PHE ASN GLY GLU ASP VAL SEQRES 3 A 169 ASP THR ILE SER PRO THR LEU GLY PHE ASN ILE LYS THR SEQRES 4 A 169 LEU GLU HIS ARG GLY PHE LYS LEU ASN ILE TRP ASP VAL SEQRES 5 A 169 GLY GLY LEU LYS SER LEU ARG SER TYR TRP ARG ASN TYR SEQRES 6 A 169 PHE GLU SER THR ASP GLY LEU ILE TRP VAL VAL ASP SER SEQRES 7 A 169 ALA ASP ARG GLN ARG MET GLN ASP CYS GLN ARG GLU LEU SEQRES 8 A 169 GLN SER LEU LEU VAL GLU GLU ARG LEU ALA GLY ALA THR SEQRES 9 A 169 LEU LEU ILE PHE ALA ASN LYS GLN ASP LEU PRO GLY ALA SEQRES 10 A 169 LEU SER CYS ASN ALA ILE GLN GLU ALA LEU GLU LEU ASP SEQRES 11 A 169 SER ILE ARG SER HIS HIS TRP ARG ILE GLN GLY CYS SER SEQRES 12 A 169 ALA VAL THR GLY GLU ASP LEU LEU PRO GLY ILE ASP TRP SEQRES 13 A 169 LEU LEU ASP ASP ILE SER SER ARG VAL PHE THR ALA ASP SEQRES 1 C 240 MET LYS VAL LYS LYS GLY GLY GLY GLY ALA GLY THR ALA SEQRES 2 C 240 THR GLU SER ALA PRO GLY PRO SER GLY GLN SER VAL ALA SEQRES 3 C 240 PRO ILE PRO GLN PRO PRO ALA GLU SER GLU SER GLY SER SEQRES 4 C 240 GLU SER GLU PRO ASP ALA GLY PRO GLY PRO ARG PRO GLY SEQRES 5 C 240 PRO LEU GLN ARG LYS GLN PRO ILE GLY PRO GLU ASP VAL SEQRES 6 C 240 LEU GLY LEU GLN ARG ILE THR GLY ASP TYR LEU CYS SER SEQRES 7 C 240 PRO GLU GLU ASN ILE TYR LYS ILE ASP PHE VAL ARG PHE SEQRES 8 C 240 LYS ILE ARG ASP MET ASP SER GLY THR VAL LEU PHE GLU SEQRES 9 C 240 ILE LYS LYS PRO PRO VAL SER GLU ARG LEU PRO ILE ASN SEQRES 10 C 240 ARG ARG ASP LEU ASP PRO ASN ALA GLY ARG PHE VAL ARG SEQRES 11 C 240 TYR GLN PHE THR PRO ALA PHE LEU ARG LEU ARG GLN VAL SEQRES 12 C 240 GLY ALA THR VAL GLU PHE THR VAL GLY ASP LYS PRO VAL SEQRES 13 C 240 ASN ASN PHE ARG MET ILE GLU ARG HIS TYR PHE ARG ASN SEQRES 14 C 240 GLN LEU LEU LYS SER PHE ASP PHE HIS PHE GLY PHE CYS SEQRES 15 C 240 ILE PRO SER SER LYS ASN THR CYS GLU HIS ILE TYR ASP SEQRES 16 C 240 PHE PRO PRO LEU SER GLU GLU LEU ILE SER GLU MET ILE SEQRES 17 C 240 ARG HIS PRO TYR GLU THR GLN SER ASP SER PHE TYR PHE SEQRES 18 C 240 VAL ASP ASP ARG LEU VAL MET HIS ASN LYS ALA ASP TYR SEQRES 19 C 240 SER TYR SER GLY THR PRO HET GNP B 201 32 HET MG B 202 1 HET GNP A 201 32 HET MG A 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 5 GNP 2(C10 H17 N6 O13 P3) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *14(H2 O) HELIX 1 1 GLY B 28 PHE B 36 1 9 HELIX 2 2 LEU B 73 PHE B 81 5 9 HELIX 3 3 ASP B 95 GLN B 97 5 3 HELIX 4 4 ARG B 98 VAL B 111 1 14 HELIX 5 5 GLU B 112 ALA B 116 5 5 HELIX 6 6 SER B 134 LEU B 142 1 9 HELIX 7 7 GLU B 143 ILE B 147 5 5 HELIX 8 8 LEU B 165 ARG B 179 1 15 HELIX 9 9 GLY G 61 GLY G 67 1 7 HELIX 10 10 SER G 78 ASN G 82 5 5 HELIX 11 11 THR G 134 LEU G 140 5 7 HELIX 12 12 SER G 200 HIS G 210 1 11 HELIX 13 13 GLY A 28 PHE A 36 1 9 HELIX 14 14 LEU A 73 PHE A 81 5 9 HELIX 15 15 ASP A 95 GLN A 97 5 3 HELIX 16 16 ARG A 98 VAL A 111 1 14 HELIX 17 17 GLU A 112 ALA A 116 5 5 HELIX 18 18 SER A 134 GLU A 143 1 10 HELIX 19 19 LEU A 144 ILE A 147 5 4 HELIX 20 20 LEU A 165 ARG A 179 1 15 HELIX 21 21 GLY C 61 GLY C 67 1 7 HELIX 22 22 SER C 78 ASN C 82 5 5 HELIX 23 23 THR C 134 LEU C 140 5 7 HELIX 24 24 SER C 200 HIS C 210 1 11 SHEET 1 A10 TRP B 152 GLY B 156 0 SHEET 2 A10 THR B 119 ASN B 125 1 N ALA B 124 O GLN B 155 SHEET 3 A10 GLY B 86 ASP B 92 1 N LEU B 87 O THR B 119 SHEET 4 A10 ARG B 18 LEU B 22 1 N LEU B 20 O GLY B 86 SHEET 5 A10 PHE B 60 VAL B 67 1 O TRP B 65 N MET B 21 SHEET 6 A10 PHE B 50 HIS B 57 -1 N LEU B 55 O LEU B 62 SHEET 7 A10 LYS G 187 TYR G 194 1 O GLU G 191 N ILE B 52 SHEET 8 A10 VAL G 143 THR G 150 -1 N PHE G 149 O ASN G 188 SHEET 9 A10 ASP G 87 ASP G 95 -1 N LYS G 92 O THR G 146 SHEET 10 A10 VAL G 101 LYS G 106 -1 O LEU G 102 N ILE G 93 SHEET 1 B 5 PHE G 128 GLN G 132 0 SHEET 2 B 5 ARG G 225 SER G 235 1 O ASP G 233 N TYR G 131 SHEET 3 B 5 THR G 214 VAL G 222 -1 N SER G 218 O ASN G 230 SHEET 4 B 5 VAL G 156 PHE G 167 -1 N TYR G 166 O GLN G 215 SHEET 5 B 5 GLN G 170 CYS G 182 -1 O LEU G 172 N HIS G 165 SHEET 1 C10 TRP A 152 GLY A 156 0 SHEET 2 C10 THR A 119 ASN A 125 1 N ALA A 124 O GLN A 155 SHEET 3 C10 GLY A 86 ASP A 92 1 N LEU A 87 O THR A 119 SHEET 4 C10 ARG A 18 LEU A 22 1 N LEU A 20 O GLY A 86 SHEET 5 C10 PHE A 60 VAL A 67 1 O TRP A 65 N MET A 21 SHEET 6 C10 PHE A 50 HIS A 57 -1 N LEU A 55 O LEU A 62 SHEET 7 C10 LYS C 187 TYR C 194 1 O THR C 189 N ILE A 52 SHEET 8 C10 VAL C 143 THR C 150 -1 N PHE C 149 O ASN C 188 SHEET 9 C10 ASP C 87 ASP C 95 -1 N LYS C 92 O THR C 146 SHEET 10 C10 VAL C 101 LYS C 106 -1 O LEU C 102 N ILE C 93 SHEET 1 D 5 PHE C 128 GLN C 132 0 SHEET 2 D 5 ARG C 225 SER C 235 1 O ASP C 233 N TYR C 131 SHEET 3 D 5 THR C 214 VAL C 222 -1 N SER C 218 O ASN C 230 SHEET 4 D 5 VAL C 156 PHE C 167 -1 N TYR C 166 O GLN C 215 SHEET 5 D 5 GLN C 170 CYS C 182 -1 O LEU C 172 N HIS C 165 LINK OG1 THR B 30 MG MG B 202 1555 1555 1.91 LINK O1G GNP B 201 MG MG B 202 1555 1555 2.03 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.14 LINK O2B GNP B 201 MG MG B 202 1555 1555 2.22 LINK MG MG B 202 O HOH B 302 1555 1555 2.24 LINK OG1 THR A 47 MG MG A 202 1555 1555 2.26 LINK MG MG A 202 O HOH A 302 1555 1555 2.30 LINK MG MG A 202 O HOH A 301 1555 1555 2.33 LINK O1G GNP A 201 MG MG A 202 1555 1555 2.35 LINK MG MG B 202 O HOH B 301 1555 1555 2.35 LINK OG1 THR B 47 MG MG B 202 1555 1555 2.44 CISPEP 1 PRO G 108 PRO G 109 0 1.68 CISPEP 2 PRO C 108 PRO C 109 0 1.17 SITE 1 AC1 19 ASP B 25 ASN B 26 ALA B 27 GLY B 28 SITE 2 AC1 19 LYS B 29 THR B 30 THR B 31 THR B 47 SITE 3 AC1 19 GLY B 69 ASN B 125 LYS B 126 ASP B 128 SITE 4 AC1 19 LEU B 129 SER B 158 ALA B 159 VAL B 160 SITE 5 AC1 19 MG B 202 HOH B 301 HOH B 302 SITE 1 AC2 6 THR B 30 THR B 47 ASP B 66 GNP B 201 SITE 2 AC2 6 HOH B 301 HOH B 302 SITE 1 AC3 20 ASP A 25 ASN A 26 ALA A 27 GLY A 28 SITE 2 AC3 20 LYS A 29 THR A 30 THR A 31 THR A 47 SITE 3 AC3 20 GLY A 69 ASN A 125 LYS A 126 ASP A 128 SITE 4 AC3 20 LEU A 129 SER A 158 ALA A 159 VAL A 160 SITE 5 AC3 20 MG A 202 HOH A 301 HOH A 302 HOH A 303 SITE 1 AC4 6 THR A 30 THR A 47 ASP A 66 GNP A 201 SITE 2 AC4 6 HOH A 301 HOH A 302 CRYST1 101.450 61.080 143.620 90.00 101.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009857 0.000000 0.001976 0.00000 SCALE2 0.000000 0.016372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007101 0.00000 MASTER 551 0 4 24 30 0 14 6 0 0 0 64 END