HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-AUG-12 4GL6 TITLE CRYSTAL STRUCTURE OF A DUF5037 FAMILY PROTEIN (RUMGNA_01148) FROM TITLE 2 RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.55 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS GNAVUS; SOURCE 3 ORGANISM_TAXID: 411470; SOURCE 4 STRAIN: ATCC 29149; SOURCE 5 GENE: RUMGNA_01148; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS HYPOTHETICAL PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 24-JAN-18 4GL6 1 JRNL REVDAT 3 11-OCT-17 4GL6 1 REMARK REVDAT 2 24-DEC-14 4GL6 1 TITLE REVDAT 1 03-OCT-12 4GL6 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (RUMGNA_01148) JRNL TITL 2 FROM RUMINOCOCCUS GNAVUS ATCC 29149 AT 2.55 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1421 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.91000 REMARK 3 B22 (A**2) : -4.81000 REMARK 3 B33 (A**2) : 1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.53000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.469 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.251 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.212 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.894 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4008 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2700 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5415 ; 1.646 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6614 ; 1.404 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 478 ; 3.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;34.916 ;26.318 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;11.245 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.905 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 547 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4507 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 264 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7710 3.9660 8.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.3097 REMARK 3 T33: 0.1700 T12: 0.0169 REMARK 3 T13: -0.1395 T23: 0.0732 REMARK 3 L TENSOR REMARK 3 L11: 2.8428 L22: 1.8870 REMARK 3 L33: 2.4383 L12: -0.0154 REMARK 3 L13: -0.5930 L23: 0.4604 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.2568 S13: -0.2560 REMARK 3 S21: 0.1769 S22: -0.1189 S23: -0.1694 REMARK 3 S31: 0.2136 S32: 0.2090 S33: 0.1753 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 264 REMARK 3 ORIGIN FOR THE GROUP (A): 53.6630 32.9430 0.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.2296 REMARK 3 T33: 0.2444 T12: 0.0602 REMARK 3 T13: -0.0551 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.9948 L22: 2.3568 REMARK 3 L33: 1.6133 L12: 0.9939 REMARK 3 L13: 0.0306 L23: 0.2430 REMARK 3 S TENSOR REMARK 3 S11: 0.2021 S12: 0.0403 S13: 0.5524 REMARK 3 S21: -0.0804 S22: -0.0898 S23: -0.1025 REMARK 3 S31: -0.1229 S32: 0.0814 S33: -0.1123 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 6. GLYCEROL (GOL) MOLECULES FROM THE REMARK 3 CRYSTALLIZATION SOLUTION ARE MODELED. REMARK 4 REMARK 4 4GL6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000074321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 45.971 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.08M SODIUM CACODYLATE PH 6.5, 20% REMARK 280 GLYCEROL, 16% POLYETHYLENE GLYCOL 8000, 0.16M MAGNESIUM ACETATE, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 74.32650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.06950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 74.32650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.06950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 HIS A 25 REMARK 465 GLU A 26 REMARK 465 ASN A 27 REMARK 465 GLU A 265 REMARK 465 GLN A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 TYR A 269 REMARK 465 GLN A 270 REMARK 465 GLU B 265 REMARK 465 GLN B 266 REMARK 465 GLU B 267 REMARK 465 LYS B 268 REMARK 465 TYR B 269 REMARK 465 GLN B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 141.39 174.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-417402 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-270 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4GL6 A 25 270 UNP A7B0S2 A7B0S2_RUMGN 25 270 DBREF 4GL6 B 25 270 UNP A7B0S2 A7B0S2_RUMGN 25 270 SEQADV 4GL6 GLY A 0 UNP A7B0S2 LEADER SEQUENCE SEQADV 4GL6 GLY B 0 UNP A7B0S2 LEADER SEQUENCE SEQRES 1 A 247 GLY HIS GLU ASN GLU ILE SER ILE LYS ILE GLU THR TYR SEQRES 2 A 247 LEU GLN GLU GLU TYR GLY GLU GLU PHE GLU VAL LEU SER SEQRES 3 A 247 TRP ASN GLN PRO LYS LEU LEU PRO SER ASP ASN GLY ALA SEQRES 4 A 247 ILE TYR ALA THR CYS ILE SER LYS ASN ASP PRO LYS HIS SEQRES 5 A 247 PRO PHE GLU GLY SER TYR PHE ASN PRO GLU GLU PRO ASN SEQRES 6 A 247 SER GLU ILE GLU ILE ILE TYR ASP GLY TYR GLY GLN ARG SEQRES 7 A 247 LEU LEU ALA LYS GLN MSE GLU SER MSE ILE GLU GLU ALA SEQRES 8 A 247 ILE SER GLN ALA ALA GLU ASN TYR TYR ILE GLN GLY ASP SEQRES 9 A 247 ILE ILE ILE PRO GLU GLU TRP GLN ASP ILE PRO VAL GLU SEQRES 10 A 247 GLU ILE SER GLN TRP LYS ASN TYR VAL ASP LEU CYS ASN SEQRES 11 A 247 GLN SER ASN SER ASP TYR LYS THR LEU GLY SER ALA TRP SEQRES 12 A 247 VAL TYR ILE ASP ALA SER THR MSE LYS GLY LYS THR ASP SEQRES 13 A 247 GLU GLU GLU TYR GLN MSE TYR GLU GLU VAL TYR ARG ASP SEQRES 14 A 247 LYS LEU GLY GLY GLN ALA LEU LEU TYR VAL TYR TYR LEU SEQRES 15 A 247 ASP HIS LYS SER PHE GLU LYS ALA GLU LYS ILE LEU GLU SEQRES 16 A 247 ILE PHE THR SER GLY ASP GLU GLY SER ASN PHE GLU ASP SEQRES 17 A 247 ILE ILE GLU GLY GLN PRO TYR PHE GLY THR ILE MSE ARG SEQRES 18 A 247 TYR GLY SER ASP LYS PHE ASP ASP ASN LEU GLU ILE PHE SEQRES 19 A 247 LYS ALA ALA LYS GLN GLY LYS GLU GLN GLU LYS TYR GLN SEQRES 1 B 247 GLY HIS GLU ASN GLU ILE SER ILE LYS ILE GLU THR TYR SEQRES 2 B 247 LEU GLN GLU GLU TYR GLY GLU GLU PHE GLU VAL LEU SER SEQRES 3 B 247 TRP ASN GLN PRO LYS LEU LEU PRO SER ASP ASN GLY ALA SEQRES 4 B 247 ILE TYR ALA THR CYS ILE SER LYS ASN ASP PRO LYS HIS SEQRES 5 B 247 PRO PHE GLU GLY SER TYR PHE ASN PRO GLU GLU PRO ASN SEQRES 6 B 247 SER GLU ILE GLU ILE ILE TYR ASP GLY TYR GLY GLN ARG SEQRES 7 B 247 LEU LEU ALA LYS GLN MSE GLU SER MSE ILE GLU GLU ALA SEQRES 8 B 247 ILE SER GLN ALA ALA GLU ASN TYR TYR ILE GLN GLY ASP SEQRES 9 B 247 ILE ILE ILE PRO GLU GLU TRP GLN ASP ILE PRO VAL GLU SEQRES 10 B 247 GLU ILE SER GLN TRP LYS ASN TYR VAL ASP LEU CYS ASN SEQRES 11 B 247 GLN SER ASN SER ASP TYR LYS THR LEU GLY SER ALA TRP SEQRES 12 B 247 VAL TYR ILE ASP ALA SER THR MSE LYS GLY LYS THR ASP SEQRES 13 B 247 GLU GLU GLU TYR GLN MSE TYR GLU GLU VAL TYR ARG ASP SEQRES 14 B 247 LYS LEU GLY GLY GLN ALA LEU LEU TYR VAL TYR TYR LEU SEQRES 15 B 247 ASP HIS LYS SER PHE GLU LYS ALA GLU LYS ILE LEU GLU SEQRES 16 B 247 ILE PHE THR SER GLY ASP GLU GLY SER ASN PHE GLU ASP SEQRES 17 B 247 ILE ILE GLU GLY GLN PRO TYR PHE GLY THR ILE MSE ARG SEQRES 18 B 247 TYR GLY SER ASP LYS PHE ASP ASP ASN LEU GLU ILE PHE SEQRES 19 B 247 LYS ALA ALA LYS GLN GLY LYS GLU GLN GLU LYS TYR GLN MODRES 4GL6 MSE A 107 MET SELENOMETHIONINE MODRES 4GL6 MSE A 110 MET SELENOMETHIONINE MODRES 4GL6 MSE A 174 MET SELENOMETHIONINE MODRES 4GL6 MSE A 185 MET SELENOMETHIONINE MODRES 4GL6 MSE A 243 MET SELENOMETHIONINE MODRES 4GL6 MSE B 107 MET SELENOMETHIONINE MODRES 4GL6 MSE B 110 MET SELENOMETHIONINE MODRES 4GL6 MSE B 174 MET SELENOMETHIONINE MODRES 4GL6 MSE B 185 MET SELENOMETHIONINE MODRES 4GL6 MSE B 243 MET SELENOMETHIONINE HET MSE A 107 8 HET MSE A 110 8 HET MSE A 174 8 HET MSE A 185 8 HET MSE A 243 8 HET MSE B 107 8 HET MSE B 110 8 HET MSE B 174 8 HET MSE B 185 8 HET MSE B 243 8 HET GOL A 301 6 HET GOL A 302 6 HET GOL B 300 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *26(H2 O) HELIX 1 1 GLU A 28 GLY A 42 1 15 HELIX 2 2 GLY A 97 ALA A 119 1 23 HELIX 3 3 PRO A 131 GLN A 135 5 5 HELIX 4 4 PRO A 138 SER A 143 1 6 HELIX 5 5 GLN A 144 ASN A 153 1 10 HELIX 6 6 SER A 172 MSE A 174 5 3 HELIX 7 7 THR A 178 LYS A 193 1 16 HELIX 8 8 ASP A 206 GLU A 218 1 13 HELIX 9 9 GLY A 226 GLU A 234 1 9 HELIX 10 10 ASN A 253 GLY A 263 1 11 HELIX 11 11 GLY B 0 ASN B 27 5 4 HELIX 12 12 GLU B 28 GLY B 42 1 15 HELIX 13 13 GLY B 97 ALA B 119 1 23 HELIX 14 14 PRO B 131 GLN B 135 5 5 HELIX 15 15 PRO B 138 SER B 143 1 6 HELIX 16 16 GLN B 144 SER B 155 1 12 HELIX 17 17 ASN B 156 TYR B 159 5 4 HELIX 18 18 SER B 172 MSE B 174 5 3 HELIX 19 19 THR B 178 LYS B 193 1 16 HELIX 20 20 ASP B 206 GLU B 218 1 13 HELIX 21 21 GLY B 226 GLU B 234 1 9 HELIX 22 22 ASN B 253 GLY B 263 1 11 SHEET 1 A 4 PHE A 45 ASN A 51 0 SHEET 2 A 4 ILE A 63 SER A 69 -1 O TYR A 64 N ASN A 51 SHEET 3 A 4 PHE A 77 PHE A 82 -1 O PHE A 77 N CYS A 67 SHEET 4 A 4 GLU A 92 TYR A 95 -1 O GLU A 92 N PHE A 82 SHEET 1 B 4 TYR A 122 ASP A 127 0 SHEET 2 B 4 GLY A 163 ASP A 170 -1 O TYR A 168 N TYR A 123 SHEET 3 B 4 ALA A 198 LEU A 205 1 O TYR A 203 N ILE A 169 SHEET 4 B 4 TYR A 238 MSE A 243 -1 O THR A 241 N LEU A 200 SHEET 1 C 4 PHE B 45 ASN B 51 0 SHEET 2 C 4 ILE B 63 SER B 69 -1 O TYR B 64 N ASN B 51 SHEET 3 C 4 PHE B 77 PHE B 82 -1 O TYR B 81 N ILE B 63 SHEET 4 C 4 GLU B 92 TYR B 95 -1 O GLU B 92 N PHE B 82 SHEET 1 D 4 TYR B 122 ASP B 127 0 SHEET 2 D 4 THR B 161 ASP B 170 -1 O TYR B 168 N TYR B 123 SHEET 3 D 4 GLN B 197 LEU B 205 1 O GLN B 197 N LEU B 162 SHEET 4 D 4 TYR B 238 MSE B 243 -1 O THR B 241 N LEU B 200 LINK C GLN A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N GLU A 108 1555 1555 1.33 LINK C SER A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N ILE A 111 1555 1555 1.33 LINK C THR A 173 N MSE A 174 1555 1555 1.35 LINK C MSE A 174 N LYS A 175 1555 1555 1.34 LINK C GLN A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N TYR A 186 1555 1555 1.33 LINK C ILE A 242 N MSE A 243 1555 1555 1.33 LINK C MSE A 243 N ARG A 244 1555 1555 1.33 LINK C GLN B 106 N MSE B 107 1555 1555 1.33 LINK C MSE B 107 N GLU B 108 1555 1555 1.33 LINK C SER B 109 N MSE B 110 1555 1555 1.33 LINK C MSE B 110 N ILE B 111 1555 1555 1.33 LINK C THR B 173 N MSE B 174 1555 1555 1.34 LINK C MSE B 174 N LYS B 175 1555 1555 1.34 LINK C GLN B 184 N MSE B 185 1555 1555 1.34 LINK C MSE B 185 N TYR B 186 1555 1555 1.33 LINK C ILE B 242 N MSE B 243 1555 1555 1.33 LINK C MSE B 243 N ARG B 244 1555 1555 1.33 SITE 1 AC1 4 HIS A 75 GLU A 112 TYR A 122 HOH A 401 SITE 1 AC2 7 ASN A 51 GLU A 78 ASP A 224 LYS B 175 SITE 2 AC2 7 GLY B 176 LYS B 177 GLU B 181 SITE 1 AC3 6 HIS B 75 GLU B 112 TYR B 122 TYR B 123 SITE 2 AC3 6 ILE B 124 HOH B 410 CRYST1 148.653 84.139 53.031 90.00 98.31 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006727 0.000000 0.000982 0.00000 SCALE2 0.000000 0.011885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019057 0.00000 MASTER 364 0 13 22 16 0 5 6 0 0 0 38 END