HEADER TRANSFERASE 23-JUL-12 4G9H TITLE CRYSTAL STRUCTURE OF GLUTAHTIONE S-TRANSFERASE HOMOLOG FROM YERSINIA TITLE 2 PESTIS, TARGET EFI-501894, WITH BOUND GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTATHIONINE S-TRANSFERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: GST, GST2, Y1968, YP_2153; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS GST, GLUTATHIONE S-TRANSFERASE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,R.N.ARMSTRONG,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 1 15-AUG-12 4G9H 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,R.N.ARMSTRONG,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF GLUTAHTIONE S-TRANSFERASE HOMOLOG FROM JRNL TITL 2 YERSINIA PESTIS, TARGET EFI-501894, WITH BOUND GLUTATHIONE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 34755 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7749 - 4.9335 0.99 2759 120 0.1727 0.1967 REMARK 3 2 4.9335 - 3.9176 1.00 2625 128 0.1453 0.1848 REMARK 3 3 3.9176 - 3.4229 1.00 2564 147 0.1678 0.1917 REMARK 3 4 3.4229 - 3.1101 1.00 2537 142 0.1782 0.1891 REMARK 3 5 3.1101 - 2.8873 1.00 2533 139 0.1870 0.2465 REMARK 3 6 2.8873 - 2.7172 1.00 2520 151 0.1783 0.2364 REMARK 3 7 2.7172 - 2.5811 1.00 2498 133 0.1810 0.2490 REMARK 3 8 2.5811 - 2.4688 1.00 2476 163 0.1783 0.2360 REMARK 3 9 2.4688 - 2.3738 1.00 2499 127 0.1966 0.2286 REMARK 3 10 2.3738 - 2.2919 1.00 2539 116 0.1892 0.2707 REMARK 3 11 2.2919 - 2.2202 1.00 2476 120 0.2170 0.2691 REMARK 3 12 2.2202 - 2.1568 1.00 2491 129 0.2093 0.2839 REMARK 3 13 2.1568 - 2.1000 1.00 2487 136 0.2224 0.2648 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3383 REMARK 3 ANGLE : 1.019 4599 REMARK 3 CHIRALITY : 0.064 515 REMARK 3 PLANARITY : 0.004 593 REMARK 3 DIHEDRAL : 14.756 1280 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resid 0 through 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.7014 97.7130 30.2589 REMARK 3 T TENSOR REMARK 3 T11: 0.2792 T22: 0.2397 REMARK 3 T33: 0.4297 T12: -0.3046 REMARK 3 T13: -0.3705 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.7030 L22: 0.6832 REMARK 3 L33: 0.3940 L12: 0.3747 REMARK 3 L13: 0.0681 L23: -0.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: -0.1633 S13: 0.2635 REMARK 3 S21: 0.2639 S22: -0.0463 S23: -0.3942 REMARK 3 S31: -0.3982 S32: 0.4961 S33: -0.1216 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resid 31 through 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2643 106.3733 42.1844 REMARK 3 T TENSOR REMARK 3 T11: 1.1616 T22: 0.5357 REMARK 3 T33: 0.4603 T12: -0.2038 REMARK 3 T13: -0.2077 T23: -0.1641 REMARK 3 L TENSOR REMARK 3 L11: 0.5482 L22: 0.0023 REMARK 3 L33: 0.2713 L12: 0.0328 REMARK 3 L13: 0.3862 L23: 0.0217 REMARK 3 S TENSOR REMARK 3 S11: -0.0429 S12: -0.2602 S13: 0.2787 REMARK 3 S21: 0.2121 S22: 0.0676 S23: -0.2661 REMARK 3 S31: -0.2934 S32: 0.2280 S33: -0.0152 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resid 55 through 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0772 108.5088 27.7338 REMARK 3 T TENSOR REMARK 3 T11: 0.5010 T22: 0.2689 REMARK 3 T33: 0.4631 T12: -0.3149 REMARK 3 T13: -0.0382 T23: -0.1090 REMARK 3 L TENSOR REMARK 3 L11: 2.4975 L22: 3.7943 REMARK 3 L33: 0.0930 L12: 1.8416 REMARK 3 L13: 0.3295 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: 0.0492 S13: 0.1329 REMARK 3 S21: 0.0293 S22: -0.0119 S23: -0.1284 REMARK 3 S31: -0.0320 S32: 0.0406 S33: -0.1022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resid 67 through 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7896 95.9255 19.1485 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.1730 REMARK 3 T33: 0.1772 T12: -0.0425 REMARK 3 T13: 0.0157 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.4732 L22: 1.3752 REMARK 3 L33: 1.7728 L12: 0.5717 REMARK 3 L13: -0.0112 L23: -0.4064 REMARK 3 S TENSOR REMARK 3 S11: -0.0333 S12: 0.2821 S13: -0.0379 REMARK 3 S21: 0.0498 S22: 0.0467 S23: -0.1394 REMARK 3 S31: -0.1489 S32: 0.1455 S33: 0.0115 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 106 through 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9206 92.7569 43.4382 REMARK 3 T TENSOR REMARK 3 T11: 0.5479 T22: 0.2120 REMARK 3 T33: 0.2647 T12: 0.0724 REMARK 3 T13: 0.0238 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 0.6165 L22: 0.0402 REMARK 3 L33: 3.3115 L12: 0.0745 REMARK 3 L13: -0.7541 L23: -0.3683 REMARK 3 S TENSOR REMARK 3 S11: -0.2635 S12: -0.1778 S13: 0.2334 REMARK 3 S21: 0.3141 S22: 0.0153 S23: -0.0818 REMARK 3 S31: -0.3365 S32: 0.0288 S33: 0.0622 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 120 through 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0622 84.3797 37.4709 REMARK 3 T TENSOR REMARK 3 T11: 0.4014 T22: 0.2312 REMARK 3 T33: 0.2486 T12: 0.0671 REMARK 3 T13: 0.0739 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 1.0207 L22: 1.4075 REMARK 3 L33: 5.9007 L12: -0.4219 REMARK 3 L13: -1.4094 L23: 2.2110 REMARK 3 S TENSOR REMARK 3 S11: -0.1170 S12: -0.1079 S13: 0.0572 REMARK 3 S21: 0.3912 S22: 0.1684 S23: 0.3154 REMARK 3 S31: -0.1101 S32: -0.4938 S33: -0.0031 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 142 through 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9847 85.2646 25.5516 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.1278 REMARK 3 T33: 0.2231 T12: 0.0142 REMARK 3 T13: -0.0018 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 2.1158 L22: 2.1474 REMARK 3 L33: 1.3625 L12: 0.5449 REMARK 3 L13: -0.1710 L23: -0.1181 REMARK 3 S TENSOR REMARK 3 S11: -0.1910 S12: 0.1085 S13: -0.2220 REMARK 3 S21: 0.0415 S22: -0.0110 S23: -0.2920 REMARK 3 S31: 0.2178 S32: 0.2175 S33: 0.1378 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resid 169 through 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2002 77.5939 32.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.3522 T22: 0.1416 REMARK 3 T33: 0.2242 T12: 0.0443 REMARK 3 T13: -0.0597 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.8816 L22: 1.7857 REMARK 3 L33: 2.3706 L12: 0.8876 REMARK 3 L13: 1.1577 L23: 0.1711 REMARK 3 S TENSOR REMARK 3 S11: -0.0763 S12: 0.0262 S13: -0.2774 REMARK 3 S21: 0.2388 S22: 0.1811 S23: -0.1525 REMARK 3 S31: 0.3089 S32: -0.1884 S33: -0.0459 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: chain 'A' and (resid 189 through 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4606 87.2075 31.5449 REMARK 3 T TENSOR REMARK 3 T11: 0.1811 T22: 0.5223 REMARK 3 T33: 0.6657 T12: 0.0329 REMARK 3 T13: -0.1808 T23: 0.1764 REMARK 3 L TENSOR REMARK 3 L11: 2.2218 L22: 0.7230 REMARK 3 L33: 0.3592 L12: -0.4267 REMARK 3 L13: 0.2888 L23: 0.1540 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.2372 S13: 0.0138 REMARK 3 S21: 0.1974 S22: 0.0181 S23: -0.3001 REMARK 3 S31: 0.0659 S32: 0.2647 S33: -0.0726 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: chain 'B' and (resid 0 through 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3756 96.4208 20.8364 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.2323 REMARK 3 T33: 0.4330 T12: -0.0535 REMARK 3 T13: 0.0450 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7406 L22: 1.8174 REMARK 3 L33: 1.0650 L12: 0.2697 REMARK 3 L13: 0.0788 L23: 0.1514 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0333 S13: -0.3589 REMARK 3 S21: -0.0157 S22: -0.0961 S23: 0.7735 REMARK 3 S31: 0.2597 S32: -0.4418 S33: 0.0561 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: chain 'B' and (resid 55 through 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6521 93.3969 13.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.2735 REMARK 3 T33: 0.2043 T12: -0.0790 REMARK 3 T13: -0.0160 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.3128 L22: 1.9946 REMARK 3 L33: 1.4539 L12: 0.2053 REMARK 3 L13: 0.5820 L23: 1.6590 REMARK 3 S TENSOR REMARK 3 S11: 0.1914 S12: 0.3836 S13: -0.2117 REMARK 3 S21: -0.0593 S22: -0.1354 S23: 0.1602 REMARK 3 S31: 0.0817 S32: -0.0494 S33: -0.0408 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: chain 'B' and (resid 67 through 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5970 107.0017 19.2282 REMARK 3 T TENSOR REMARK 3 T11: 0.2800 T22: 0.1296 REMARK 3 T33: 0.1976 T12: -0.0148 REMARK 3 T13: 0.0236 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 1.7289 L22: 1.2952 REMARK 3 L33: 1.3677 L12: 0.3410 REMARK 3 L13: -0.2296 L23: 0.0554 REMARK 3 S TENSOR REMARK 3 S11: -0.0213 S12: 0.1947 S13: 0.1360 REMARK 3 S21: -0.0790 S22: 0.0045 S23: -0.2622 REMARK 3 S31: -0.4487 S32: 0.1611 S33: 0.0409 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: chain 'B' and (resid 106 through 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5301 97.9498 40.4006 REMARK 3 T TENSOR REMARK 3 T11: 0.4363 T22: 0.3036 REMARK 3 T33: 0.3399 T12: 0.0271 REMARK 3 T13: 0.1765 T23: 0.1269 REMARK 3 L TENSOR REMARK 3 L11: 1.5334 L22: 0.0814 REMARK 3 L33: 1.1667 L12: -0.0815 REMARK 3 L13: 0.1167 L23: 0.2945 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.3621 S13: -0.4965 REMARK 3 S21: 0.1743 S22: 0.1099 S23: 0.3683 REMARK 3 S31: 0.2452 S32: -0.2574 S33: 0.0249 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: chain 'B' and (resid 120 through 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8126 107.4726 43.9222 REMARK 3 T TENSOR REMARK 3 T11: 0.6060 T22: 0.3847 REMARK 3 T33: 0.2289 T12: 0.1836 REMARK 3 T13: 0.0529 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.0178 L22: 2.8713 REMARK 3 L33: 1.3083 L12: 0.3285 REMARK 3 L13: 0.1770 L23: -1.4426 REMARK 3 S TENSOR REMARK 3 S11: -0.3272 S12: -0.7923 S13: -0.2135 REMARK 3 S21: 0.5568 S22: 0.1946 S23: 0.1490 REMARK 3 S31: -0.1097 S32: 0.1882 S33: 0.1170 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: chain 'B' and (resid 142 through 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9707 119.0988 25.3801 REMARK 3 T TENSOR REMARK 3 T11: 0.4942 T22: 0.1496 REMARK 3 T33: 0.2915 T12: -0.0691 REMARK 3 T13: -0.0367 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 3.0001 L22: 4.8322 REMARK 3 L33: 1.8515 L12: 1.1076 REMARK 3 L13: -0.1765 L23: 1.6806 REMARK 3 S TENSOR REMARK 3 S11: -0.1018 S12: 0.0198 S13: 0.4302 REMARK 3 S21: -0.0057 S22: 0.0341 S23: -0.2146 REMARK 3 S31: -0.3843 S32: 0.2633 S33: 0.0373 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: chain 'B' and (resid 154 through 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8085 108.8116 30.7046 REMARK 3 T TENSOR REMARK 3 T11: 0.3061 T22: 0.1785 REMARK 3 T33: 0.1665 T12: 0.0389 REMARK 3 T13: 0.0546 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 1.1396 L22: 1.1069 REMARK 3 L33: 2.1245 L12: 0.4101 REMARK 3 L13: -0.2780 L23: -0.7672 REMARK 3 S TENSOR REMARK 3 S11: -0.1114 S12: -0.2822 S13: -0.0684 REMARK 3 S21: 0.3342 S22: 0.1022 S23: 0.0962 REMARK 3 S31: -0.2220 S32: -0.2653 S33: -0.0412 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: chain 'B' and (resid 169 through 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6163 117.0835 36.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.5421 T22: 0.2870 REMARK 3 T33: 0.2123 T12: 0.1556 REMARK 3 T13: 0.0239 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 1.7482 L22: 1.8076 REMARK 3 L33: 3.0880 L12: 0.1815 REMARK 3 L13: 0.7758 L23: 0.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.1739 S12: -0.3328 S13: 0.1477 REMARK 3 S21: 0.5830 S22: 0.0827 S23: -0.0771 REMARK 3 S31: -0.3419 S32: 0.0906 S33: 0.0233 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: chain 'B' and (resid 189 through 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3722 111.1759 22.0555 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.2002 REMARK 3 T33: 0.2964 T12: 0.0259 REMARK 3 T13: 0.0483 T23: 0.0787 REMARK 3 L TENSOR REMARK 3 L11: 1.8752 L22: 4.0996 REMARK 3 L33: 2.1678 L12: 1.0453 REMARK 3 L13: 0.5001 L23: -0.2794 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.2148 S13: -0.2274 REMARK 3 S21: 0.0597 S22: 0.0585 S23: 0.5710 REMARK 3 S31: -0.0069 S32: -0.2743 S33: -0.0628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G9H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-12. REMARK 100 THE RCSB ID CODE IS RCSB073906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX 225 HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34816 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 75.709 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.79100 REMARK 200 R SYM FOR SHELL (I) : 0.79100 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2PMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 100 MM REMARK 280 NACL); RESERVOIR (0.6 M NACL, 0.1 M MES PH 6.5, 20% PEG4000); REMARK 280 CRYOPROTECTION (RESERVOIR, + 20% GLYCEROL), SITTING DROP VAPOR REMARK 280 DIFFUCTION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.39300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.97250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.97250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.19650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.97250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.97250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.58950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.97250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.97250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.19650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.97250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.97250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.58950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.39300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 LYS A 202 REMARK 465 ALA A 203 REMARK 465 GLU A 204 REMARK 465 ASN A 205 REMARK 465 LEU A 206 REMARK 465 TYR A 207 REMARK 465 PHE A 208 REMARK 465 GLN A 209 REMARK 465 MET B -1 REMARK 465 LYS B 202 REMARK 465 ALA B 203 REMARK 465 GLU B 204 REMARK 465 ASN B 205 REMARK 465 LEU B 206 REMARK 465 TYR B 207 REMARK 465 PHE B 208 REMARK 465 GLN B 209 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 2 N CA C O CB CG SD REMARK 480 MET B 2 CE REMARK 480 VAL B 162 N CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 80 O HOH B 431 2.14 REMARK 500 OE1 GLU B 188 O HOH B 474 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 34 -62.73 -99.21 REMARK 500 GLU A 66 109.64 72.95 REMARK 500 LEU A 106 -66.02 -99.10 REMARK 500 ALA B 10 -177.72 -68.83 REMARK 500 ILE B 47 -61.15 -97.18 REMARK 500 GLU B 66 112.89 74.36 REMARK 500 LEU B 106 -68.13 -91.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501894 RELATED DB: TARGETTRACK DBREF 4G9H A 1 202 UNP Q8D0L3 Q8D0L3_YERPE 1 202 DBREF 4G9H B 1 202 UNP Q8D0L3 Q8D0L3_YERPE 1 202 SEQADV 4G9H MET A -1 UNP Q8D0L3 INITIATING METHIONINE SEQADV 4G9H VAL A 0 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H ALA A 203 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H GLU A 204 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H ASN A 205 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H LEU A 206 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H TYR A 207 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H PHE A 208 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H GLN A 209 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H MET B -1 UNP Q8D0L3 INITIATING METHIONINE SEQADV 4G9H VAL B 0 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H ALA B 203 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H GLU B 204 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H ASN B 205 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H LEU B 206 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H TYR B 207 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H PHE B 208 UNP Q8D0L3 EXPRESSION TAG SEQADV 4G9H GLN B 209 UNP Q8D0L3 EXPRESSION TAG SEQRES 1 A 211 MET VAL MET MET LYS LEU PHE TYR LYS PRO GLY ALA CYS SEQRES 2 A 211 SER LEU SER PRO HIS ILE VAL LEU ARG GLU ALA GLY LEU SEQRES 3 A 211 ASP PHE SER ILE GLU ARG VAL ASP LEU VAL THR LYS LYS SEQRES 4 A 211 THR GLU THR GLY ALA ASP TYR LEU SER ILE ASN PRO LYS SEQRES 5 A 211 GLY GLN VAL PRO ALA LEU VAL LEU ASP ASP GLY SER LEU SEQRES 6 A 211 LEU THR GLU GLY VAL ALA ILE VAL GLN TYR LEU ALA ASP SEQRES 7 A 211 LYS VAL PRO ASP ARG HIS LEU ILE ALA PRO SER GLY THR SEQRES 8 A 211 LEU SER ARG TYR HIS ALA ILE GLU TRP LEU ASN PHE ILE SEQRES 9 A 211 ALA THR GLU LEU HIS LYS GLY PHE SER PRO LEU PHE ASN SEQRES 10 A 211 PRO ASN THR PRO ASP GLU TYR LYS THR ILE VAL ARG GLU SEQRES 11 A 211 ARG LEU ASP LYS GLN PHE SER TYR VAL ASP SER VAL LEU SEQRES 12 A 211 ALA GLU HIS ASP TYR LEU LEU GLY LYS LYS PHE SER VAL SEQRES 13 A 211 ALA ASP ALA TYR LEU PHE THR VAL SER ARG TRP ALA ASN SEQRES 14 A 211 ALA LEU ASN LEU GLN ILE LYS GLU ARG SER HIS LEU ASP SEQRES 15 A 211 GLN TYR MET ALA ARG VAL ALA GLU ARG PRO ALA VAL LYS SEQRES 16 A 211 ALA ALA LEU ALA ALA GLU ASP ILE LYS ALA GLU ASN LEU SEQRES 17 A 211 TYR PHE GLN SEQRES 1 B 211 MET VAL MET MET LYS LEU PHE TYR LYS PRO GLY ALA CYS SEQRES 2 B 211 SER LEU SER PRO HIS ILE VAL LEU ARG GLU ALA GLY LEU SEQRES 3 B 211 ASP PHE SER ILE GLU ARG VAL ASP LEU VAL THR LYS LYS SEQRES 4 B 211 THR GLU THR GLY ALA ASP TYR LEU SER ILE ASN PRO LYS SEQRES 5 B 211 GLY GLN VAL PRO ALA LEU VAL LEU ASP ASP GLY SER LEU SEQRES 6 B 211 LEU THR GLU GLY VAL ALA ILE VAL GLN TYR LEU ALA ASP SEQRES 7 B 211 LYS VAL PRO ASP ARG HIS LEU ILE ALA PRO SER GLY THR SEQRES 8 B 211 LEU SER ARG TYR HIS ALA ILE GLU TRP LEU ASN PHE ILE SEQRES 9 B 211 ALA THR GLU LEU HIS LYS GLY PHE SER PRO LEU PHE ASN SEQRES 10 B 211 PRO ASN THR PRO ASP GLU TYR LYS THR ILE VAL ARG GLU SEQRES 11 B 211 ARG LEU ASP LYS GLN PHE SER TYR VAL ASP SER VAL LEU SEQRES 12 B 211 ALA GLU HIS ASP TYR LEU LEU GLY LYS LYS PHE SER VAL SEQRES 13 B 211 ALA ASP ALA TYR LEU PHE THR VAL SER ARG TRP ALA ASN SEQRES 14 B 211 ALA LEU ASN LEU GLN ILE LYS GLU ARG SER HIS LEU ASP SEQRES 15 B 211 GLN TYR MET ALA ARG VAL ALA GLU ARG PRO ALA VAL LYS SEQRES 16 B 211 ALA ALA LEU ALA ALA GLU ASP ILE LYS ALA GLU ASN LEU SEQRES 17 B 211 TYR PHE GLN HET GSH A 301 20 HET GOL A 302 6 HET GSH B 301 20 HETNAM GSH GLUTATHIONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GSH 2(C10 H17 N3 O6 S) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *248(H2 O) HELIX 1 1 SER A 12 GLY A 23 1 12 HELIX 2 2 ASP A 43 ASN A 48 1 6 HELIX 3 3 GLU A 66 VAL A 78 1 13 HELIX 4 4 PRO A 79 HIS A 82 5 4 HELIX 5 5 THR A 89 LEU A 106 1 18 HELIX 6 6 LEU A 106 ASN A 115 1 10 HELIX 7 7 PRO A 119 ALA A 142 1 24 HELIX 8 8 SER A 153 LEU A 169 1 17 HELIX 9 9 ARG A 176 GLU A 188 1 13 HELIX 10 10 ARG A 189 GLU A 199 1 11 HELIX 11 11 SER B 12 GLY B 23 1 12 HELIX 12 12 ASP B 43 ILE B 47 5 5 HELIX 13 13 GLU B 66 VAL B 78 1 13 HELIX 14 14 PRO B 79 HIS B 82 5 4 HELIX 15 15 THR B 89 LEU B 106 1 18 HELIX 16 16 HIS B 107 ASN B 115 5 9 HELIX 17 17 PRO B 119 ALA B 142 1 24 HELIX 18 18 SER B 153 LEU B 169 1 17 HELIX 19 19 ARG B 176 GLU B 188 1 13 HELIX 20 20 ARG B 189 GLU B 199 1 11 SHEET 1 A 5 LYS A 37 THR A 38 0 SHEET 2 A 5 PHE A 26 ASP A 32 -1 N ASP A 32 O LYS A 37 SHEET 3 A 5 MET A 2 TYR A 6 1 N MET A 2 O SER A 27 SHEET 4 A 5 ALA A 55 VAL A 57 -1 O VAL A 57 N LYS A 3 SHEET 5 A 5 LEU A 63 THR A 65 -1 O LEU A 64 N LEU A 56 SHEET 1 B 5 LYS B 37 THR B 38 0 SHEET 2 B 5 PHE B 26 ASP B 32 -1 N ASP B 32 O LYS B 37 SHEET 3 B 5 MET B 2 TYR B 6 1 N LEU B 4 O GLU B 29 SHEET 4 B 5 ALA B 55 VAL B 57 -1 O ALA B 55 N PHE B 5 SHEET 5 B 5 LEU B 63 THR B 65 -1 O LEU B 64 N LEU B 56 CISPEP 1 VAL A 53 PRO A 54 0 -1.92 CISPEP 2 VAL B 53 PRO B 54 0 -2.90 SITE 1 AC1 15 CYS A 11 LEU A 33 LYS A 36 GLY A 51 SITE 2 AC1 15 GLN A 52 VAL A 53 GLU A 66 GLY A 67 SITE 3 AC1 15 HOH A 409 HOH A 410 HOH A 491 HOH A 516 SITE 4 AC1 15 ASN B 100 THR B 104 GLU B 105 SITE 1 AC2 8 HIS A 82 LEU A 83 ILE A 84 ALA A 85 SITE 2 AC2 8 LYS A 151 PHE A 152 SER A 153 HOH A 412 SITE 1 AC3 18 ASN A 100 THR A 104 GLU A 105 CYS B 11 SITE 2 AC3 18 LEU B 33 LYS B 36 GLN B 52 VAL B 53 SITE 3 AC3 18 GLU B 66 GLY B 67 HIS B 107 TRP B 165 SITE 4 AC3 18 HOH B 404 HOH B 416 HOH B 450 HOH B 463 SITE 5 AC3 18 HOH B 516 HOH B 517 CRYST1 87.945 87.945 148.786 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006721 0.00000 MASTER 580 0 3 20 10 0 11 6 0 0 0 34 END