HEADER PEPTIDE BINDING PROTEIN 16-JUL-12 4G4Y TITLE CRYSTAL STRUCTURE OF OMPA PEPTIDOGLYCAN-BINDING DOMAIN FROM TITLE 2 ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN OMP38; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: PEPTIDOGLYCAN-BINDING DOMAIN, UNP RESIDUES 221-339; COMPND 5 SYNONYM: OUTER MEMBRANE PROTEIN OMPA, OUTER MEMBRANE PROTEIN OMPAB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: OMP38, OMPA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OMPA-LIKE DOMAIN, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.C.LEE,J.H.SONG,J.S.PARK,H.Y.KIM REVDAT 2 15-NOV-17 4G4Y 1 REMARK REVDAT 1 24-JUL-13 4G4Y 0 JRNL AUTH W.C.LEE,J.S.PARK,J.H.SONG,S.I.KIM,J.C.LEE,J.CHEONG,H.Y.KIM JRNL TITL ENANTIOMER-DEPENDENT AMINO ACID BINDING AFFINITY OF JRNL TITL 2 OMPA-LIKE DOMAINS FROM ACINETOBACTER BAUMANNII JRNL TITL 3 PEPTIDOGLYCAN-ASSOCIATED LIPOPROTEIN AND OMPA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 116387 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5872 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11047 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE : 0.2937 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 563 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 947 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05700 REMARK 3 B22 (A**2) : 2.87000 REMARK 3 B33 (A**2) : -0.81300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.81800 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.081 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.585 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.289 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.458 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 45.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 6 : DAL.PARAM REMARK 3 PARAMETER FILE 7 : GOL.PARAM REMARK 3 PARAMETER FILE 8 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 6 : DAL.TOP REMARK 3 TOPOLOGY FILE 7 : GOL.TOP REMARK 3 TOPOLOGY FILE 8 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4G4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000073743. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : UGUI REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M AMMONIUM TARTRATE, 15%-20% PEG REMARK 280 3350, PH 8, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.24500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 217 REMARK 465 SER A 218 REMARK 465 HIS A 219 REMARK 465 GLY B 217 REMARK 465 GLY C 217 REMARK 465 SER C 218 REMARK 465 HIS C 219 REMARK 465 GLY D 217 REMARK 465 GLY E 217 REMARK 465 SER E 218 REMARK 465 GLY F 217 REMARK 465 GLY G 217 REMARK 465 GLY H 217 REMARK 465 SER H 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 311 -133.88 48.70 REMARK 500 ASN B 237 16.46 59.61 REMARK 500 ALA B 311 -133.43 50.08 REMARK 500 ASN C 237 13.09 59.30 REMARK 500 ALA C 311 -130.60 49.90 REMARK 500 ASN D 237 19.37 59.35 REMARK 500 ALA D 311 -130.14 50.84 REMARK 500 ASN E 237 17.06 59.08 REMARK 500 ALA E 311 -130.73 51.88 REMARK 500 ASN F 237 18.67 58.61 REMARK 500 ALA F 311 -130.25 49.05 REMARK 500 ALA G 311 -133.11 49.95 REMARK 500 ALA H 311 -134.27 50.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA G 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 G 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA H 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4G4V RELATED DB: PDB REMARK 900 RELATED ID: 4G4W RELATED DB: PDB REMARK 900 RELATED ID: 4G4X RELATED DB: PDB REMARK 900 RELATED ID: 4G4Z RELATED DB: PDB REMARK 900 RELATED ID: 4G88 RELATED DB: PDB DBREF 4G4Y A 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y B 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y C 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y D 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y E 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y F 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y G 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 DBREF 4G4Y H 221 339 UNP Q6RYW5 OMP38_ACIBA 221 339 SEQADV 4G4Y GLY A 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER A 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS A 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET A 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY B 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER B 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS B 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET B 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY C 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER C 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS C 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET C 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY D 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER D 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS D 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET D 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY E 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER E 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS E 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET E 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY F 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER F 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS F 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET F 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY G 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER G 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS G 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET G 220 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y GLY H 217 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y SER H 218 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y HIS H 219 UNP Q6RYW5 EXPRESSION TAG SEQADV 4G4Y MET H 220 UNP Q6RYW5 EXPRESSION TAG SEQRES 1 A 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 A 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 A 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 A 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 A 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 A 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 A 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 A 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 A 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 A 123 THR ILE THR GLY SER ARG SEQRES 1 B 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 B 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 B 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 B 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 B 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 B 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 B 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 B 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 B 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 B 123 THR ILE THR GLY SER ARG SEQRES 1 C 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 C 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 C 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 C 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 C 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 C 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 C 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 C 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 C 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 C 123 THR ILE THR GLY SER ARG SEQRES 1 D 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 D 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 D 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 D 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 D 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 D 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 D 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 D 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 D 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 D 123 THR ILE THR GLY SER ARG SEQRES 1 E 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 E 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 E 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 E 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 E 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 E 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 E 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 E 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 E 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 E 123 THR ILE THR GLY SER ARG SEQRES 1 F 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 F 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 F 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 F 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 F 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 F 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 F 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 F 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 F 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 F 123 THR ILE THR GLY SER ARG SEQRES 1 G 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 G 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 G 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 G 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 G 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 G 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 G 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 G 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 G 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 G 123 THR ILE THR GLY SER ARG SEQRES 1 H 123 GLY SER HIS MET GLU LEU THR GLU ASP LEU ASN MET GLU SEQRES 2 H 123 LEU ARG VAL PHE PHE ASP THR ASN LYS SER ASN ILE LYS SEQRES 3 H 123 ASP GLN TYR LYS PRO GLU ILE ALA LYS VAL ALA GLU LYS SEQRES 4 H 123 LEU SER GLU TYR PRO ASN ALA THR ALA ARG ILE GLU GLY SEQRES 5 H 123 HIS THR ASP ASN THR GLY PRO ARG LYS LEU ASN GLU ARG SEQRES 6 H 123 LEU SER LEU ALA ARG ALA ASN SER VAL LYS SER ALA LEU SEQRES 7 H 123 VAL ASN GLU TYR ASN VAL ASP ALA SER ARG LEU SER THR SEQRES 8 H 123 GLN GLY PHE ALA TRP ASP GLN PRO ILE ALA ASP ASN LYS SEQRES 9 H 123 THR LYS GLU GLY ARG ALA MET ASN ARG ARG VAL PHE ALA SEQRES 10 H 123 THR ILE THR GLY SER ARG HET ALA A 401 6 HET SO4 A 402 5 HET ALA B 401 6 HET SO4 B 402 5 HET ALA C 401 6 HET SO4 C 402 5 HET ALA D 401 6 HET SO4 D 402 5 HET ALA E 401 6 HET SO4 E 402 5 HET ALA F 401 6 HET SO4 F 402 5 HET ALA G 401 6 HET SO4 G 402 5 HET ALA H 401 6 HET SO4 H 402 5 HETNAM ALA ALANINE HETNAM SO4 SULFATE ION FORMUL 9 ALA 8(C3 H7 N O2) FORMUL 10 SO4 8(O4 S 2-) FORMUL 25 HOH *947(H2 O) HELIX 1 1 LYS A 242 GLN A 244 5 3 HELIX 2 2 TYR A 245 TYR A 259 1 15 HELIX 3 3 PRO A 275 TYR A 298 1 24 HELIX 4 4 ASP A 301 SER A 303 5 3 HELIX 5 5 THR A 321 ARG A 329 1 9 HELIX 6 6 LYS B 242 GLN B 244 5 3 HELIX 7 7 TYR B 245 TYR B 259 1 15 HELIX 8 8 PRO B 275 ASN B 299 1 25 HELIX 9 9 ASP B 301 SER B 303 5 3 HELIX 10 10 THR B 321 ARG B 329 1 9 HELIX 11 11 LYS C 242 GLN C 244 5 3 HELIX 12 12 TYR C 245 TYR C 259 1 15 HELIX 13 13 PRO C 275 ASN C 299 1 25 HELIX 14 14 ASP C 301 SER C 303 5 3 HELIX 15 15 THR C 321 ARG C 329 1 9 HELIX 16 16 LYS D 242 GLN D 244 5 3 HELIX 17 17 TYR D 245 TYR D 259 1 15 HELIX 18 18 PRO D 275 TYR D 298 1 24 HELIX 19 19 ASP D 301 SER D 303 5 3 HELIX 20 20 THR D 321 ARG D 329 1 9 HELIX 21 21 LYS E 242 GLN E 244 5 3 HELIX 22 22 TYR E 245 TYR E 259 1 15 HELIX 23 23 PRO E 275 ASN E 299 1 25 HELIX 24 24 ASP E 301 SER E 303 5 3 HELIX 25 25 THR E 321 ARG E 329 1 9 HELIX 26 26 LYS F 242 GLN F 244 5 3 HELIX 27 27 TYR F 245 TYR F 259 1 15 HELIX 28 28 PRO F 275 ASN F 299 1 25 HELIX 29 29 ASP F 301 SER F 303 5 3 HELIX 30 30 THR F 321 ARG F 329 1 9 HELIX 31 31 LYS G 242 GLN G 244 5 3 HELIX 32 32 TYR G 245 TYR G 259 1 15 HELIX 33 33 PRO G 275 TYR G 298 1 24 HELIX 34 34 ASP G 301 SER G 303 5 3 HELIX 35 35 THR G 321 ARG G 329 1 9 HELIX 36 36 LYS H 242 GLN H 244 5 3 HELIX 37 37 TYR H 245 TYR H 259 1 15 HELIX 38 38 PRO H 275 ASN H 299 1 25 HELIX 39 39 ASP H 301 SER H 303 5 3 HELIX 40 40 THR H 321 ARG H 329 1 9 SHEET 1 A 8 LEU A 305 GLY A 309 0 SHEET 2 A 8 THR A 263 GLY A 268 1 N GLY A 268 O GLN A 308 SHEET 3 A 8 ARG A 330 ARG A 339 -1 O THR A 334 N ARG A 265 SHEET 4 A 8 GLU A 221 PHE A 233 -1 N LEU A 226 O GLY A 337 SHEET 5 A 8 GLU C 221 PHE C 233 -1 O GLU C 229 N GLU A 221 SHEET 6 A 8 ARG C 330 ARG C 339 -1 O GLY C 337 N LEU C 226 SHEET 7 A 8 THR C 263 GLY C 268 -1 N GLU C 267 O PHE C 332 SHEET 8 A 8 LEU C 305 GLY C 309 1 O GLN C 308 N GLY C 268 SHEET 1 B 8 LEU B 305 GLY B 309 0 SHEET 2 B 8 THR B 263 GLY B 268 1 N GLY B 268 O GLN B 308 SHEET 3 B 8 ARG B 330 SER B 338 -1 O THR B 336 N THR B 263 SHEET 4 B 8 MET B 220 PHE B 233 -1 N LEU B 226 O GLY B 337 SHEET 5 B 8 MET D 220 PHE D 233 -1 O GLU D 229 N GLU B 221 SHEET 6 B 8 ARG D 330 SER D 338 -1 O ALA D 333 N LEU D 230 SHEET 7 B 8 THR D 263 GLY D 268 -1 N GLU D 267 O PHE D 332 SHEET 8 B 8 LEU D 305 GLY D 309 1 O SER D 306 N ILE D 266 SHEET 1 C 8 LEU E 305 GLY E 309 0 SHEET 2 C 8 THR E 263 GLY E 268 1 N GLY E 268 O GLN E 308 SHEET 3 C 8 ARG E 330 ARG E 339 -1 O THR E 334 N ARG E 265 SHEET 4 C 8 GLU E 221 PHE E 233 -1 N LEU E 226 O GLY E 337 SHEET 5 C 8 MET H 220 PHE H 233 -1 O GLU H 221 N GLU E 229 SHEET 6 C 8 ARG H 330 ARG H 339 -1 O GLY H 337 N LEU H 226 SHEET 7 C 8 THR H 263 GLY H 268 -1 N GLU H 267 O PHE H 332 SHEET 8 C 8 LEU H 305 GLY H 309 1 O GLN H 308 N GLY H 268 SHEET 1 D 8 LEU F 305 GLY F 309 0 SHEET 2 D 8 THR F 263 GLY F 268 1 N GLY F 268 O GLN F 308 SHEET 3 D 8 ARG F 330 SER F 338 -1 O THR F 334 N ARG F 265 SHEET 4 D 8 MET F 220 PHE F 233 -1 N LEU F 226 O GLY F 337 SHEET 5 D 8 MET G 220 PHE G 233 -1 O GLU G 229 N GLU F 221 SHEET 6 D 8 ARG G 330 SER G 338 -1 O GLY G 337 N LEU G 226 SHEET 7 D 8 THR G 263 GLY G 268 -1 N ARG G 265 O THR G 334 SHEET 8 D 8 LEU G 305 GLY G 309 1 O GLN G 308 N GLY G 268 SITE 1 AC1 9 THR A 236 ASN A 237 THR A 270 ASP A 271 SITE 2 AC1 9 THR A 273 ASN A 279 LEU A 282 ARG A 286 SITE 3 AC1 9 ARG A 329 SITE 1 AC2 6 THR A 236 LYS A 322 ARG A 325 ARG A 329 SITE 2 AC2 6 HOH A 514 HOH A 523 SITE 1 AC3 9 THR B 236 ASN B 237 THR B 270 ASP B 271 SITE 2 AC3 9 THR B 273 ASN B 279 LEU B 282 ARG B 286 SITE 3 AC3 9 ARG B 329 SITE 1 AC4 6 THR B 236 LYS B 322 ARG B 325 ARG B 329 SITE 2 AC4 6 HOH B 566 HOH B 569 SITE 1 AC5 9 THR C 236 ASN C 237 THR C 270 ASP C 271 SITE 2 AC5 9 THR C 273 ASN C 279 LEU C 282 ARG C 286 SITE 3 AC5 9 ARG C 329 SITE 1 AC6 4 THR C 236 ARG C 325 ARG C 329 HOH C 555 SITE 1 AC7 9 THR D 236 ASN D 237 THR D 270 ASP D 271 SITE 2 AC7 9 THR D 273 ASN D 279 LEU D 282 ARG D 286 SITE 3 AC7 9 ARG D 329 SITE 1 AC8 5 LYS D 322 ARG D 325 ARG D 329 HOH D 512 SITE 2 AC8 5 HOH D 564 SITE 1 AC9 9 THR E 236 ASN E 237 THR E 270 ASP E 271 SITE 2 AC9 9 THR E 273 ASN E 279 LEU E 282 ARG E 286 SITE 3 AC9 9 ARG E 329 SITE 1 BC1 7 THR E 236 LYS E 322 ARG E 325 ARG E 329 SITE 2 BC1 7 HOH E 517 HOH E 527 HOH E 546 SITE 1 BC2 9 THR F 236 ASN F 237 THR F 270 ASP F 271 SITE 2 BC2 9 THR F 273 ASN F 279 LEU F 282 ARG F 286 SITE 3 BC2 9 ARG F 329 SITE 1 BC3 5 THR F 236 ARG F 325 ARG F 329 HOH F 554 SITE 2 BC3 5 HOH F 563 SITE 1 BC4 9 THR G 236 ASN G 237 THR G 270 ASP G 271 SITE 2 BC4 9 THR G 273 ASN G 279 LEU G 282 ARG G 286 SITE 3 BC4 9 ARG G 329 SITE 1 BC5 6 THR G 236 LYS G 322 ARG G 325 ARG G 329 SITE 2 BC5 6 HOH G 553 HOH G 566 SITE 1 BC6 9 THR H 236 ASN H 237 THR H 270 ASP H 271 SITE 2 BC6 9 THR H 273 ASN H 279 LEU H 282 ARG H 286 SITE 3 BC6 9 ARG H 329 SITE 1 BC7 6 THR H 236 LYS H 322 ARG H 325 ARG H 329 SITE 2 BC7 6 HOH H 532 HOH H 534 CRYST1 58.090 98.490 98.060 90.00 105.90 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017215 0.000000 0.004904 0.00000 SCALE2 0.000000 0.010153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010604 0.00000 MASTER 378 0 16 40 32 0 39 6 0 0 0 80 END