HEADER HYDROLASE 11-JUL-12 4G2D TITLE CRYSTAL STRUCTURE OF THE HYPERTHERMOPHILIC SULFOLOBUS ISLANDICUS PLL TITLE 2 SISLAC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLDIALKYLPHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.8.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS ISLANDICUS; SOURCE 3 ORGANISM_TAXID: 426118; SOURCE 4 STRAIN: M.16.4; SOURCE 5 GENE: M164_0332, SISLAC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 PGRO; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROMISCUOUS ACTIVITIES, HYPERTHERMOPHILIC, HYDROLASE, KEYWDS 2 PHOSPHOTRIESTERASE-LIKE LACTONASES, QUORUM SENSING, QUORUM- KEYWDS 3 QUENCHING, BIOSCAVENGERS, (ALPHA/BETA )8-BARREL FOLD, LACTONASE, KEYWDS 4 PHOSPHOTRIESTERASE, LYSINE NZ-CARBOXYLIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR G.GOTTHARD,J.HIBLOT,M.ELIAS,E.CHABRIERE REVDAT 2 22-MAY-13 4G2D 1 JRNL REVDAT 1 24-OCT-12 4G2D 0 JRNL AUTH J.HIBLOT,G.GOTTHARD,E.CHABRIERE,M.ELIAS JRNL TITL STRUCTURAL AND ENZYMATIC CHARACTERIZATION OF THE LACTONASE JRNL TITL 2 SISLAC FROM SULFOLOBUS ISLANDICUS JRNL REF PLOS ONE V. 7 47028 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23071703 JRNL DOI 10.1371/JOURNAL.PONE.0047028 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.GOTTHARD,J.HIBLOT,M.ELIAS,E.CHABRIERE REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION ANALYSIS REMARK 1 TITL 2 OF THE HYPERTHERMOPHILIC SULFOLOBUS ISLANDICUS LACTONASE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 67 354 2011 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 21393842 REMARK 1 DOI 10.1107/S1744309110053819 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 8989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 446 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 643 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.4390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 26.68000 REMARK 3 B22 (A**2) : 26.68000 REMARK 3 B33 (A**2) : -53.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.871 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2496 ; 0.002 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3372 ; 0.513 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 313 ; 3.598 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;27.086 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;12.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 370 ; 0.036 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1886 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.507 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -H, -K, L REMARK 3 TWIN FRACTION : 0.493 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4G2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-12. REMARK 100 THE RCSB ID CODE IS RCSB073650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VC5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M TRIS, 0.2M REMARK 280 LITHIUM SULFATE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293KK REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.70000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.70000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 159.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 2 CB CG CD NE CZ NH1 NH2 REMARK 480 ILE A 3 CB CG1 CG2 CD1 REMARK 480 ILE A 11 CB CG1 CG2 CD1 REMARK 480 GLU A 12 CB CG CD OE1 OE2 REMARK 480 GLU A 14 CB CG CD OE1 OE2 REMARK 480 ASP A 15 CB CG OD1 OD2 REMARK 480 LYS A 84 CB CG CD CE NZ REMARK 480 VAL A 100 CB CG1 CG2 REMARK 480 ASP A 101 CB CG OD1 OD2 REMARK 480 LYS A 147 CB CG CD CE NZ REMARK 480 THR A 159 CB OG1 CG2 REMARK 480 LYS A 241 CB CG CD CE NZ REMARK 480 ARG A 250 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG A 267 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD ARG A 267 OE2 GLU A 269 1.54 REMARK 500 CG ARG A 267 OE2 GLU A 269 1.92 REMARK 500 O ASP A 15 NZ LYS A 62 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 12 CA GLU A 12 CB -0.338 REMARK 500 GLU A 14 CA GLU A 14 CB -0.162 REMARK 500 ASP A 15 CA ASP A 15 CB -0.133 REMARK 500 LYS A 84 CA LYS A 84 CB 0.201 REMARK 500 LYS A 84 CD LYS A 84 CE -0.282 REMARK 500 VAL A 100 CA VAL A 100 CB 0.139 REMARK 500 ASP A 101 CA ASP A 101 CB 0.170 REMARK 500 LYS A 147 CB LYS A 147 CG -0.233 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 12 N - CA - CB ANGL. DEV. = 20.7 DEGREES REMARK 500 GLU A 12 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 GLU A 14 N - CA - CB ANGL. DEV. = -19.9 DEGREES REMARK 500 ASP A 15 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 LYS A 84 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 VAL A 100 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 VAL A 100 N - CA - CB ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 101 N - CA - CB ANGL. DEV. = -17.4 DEGREES REMARK 500 LYS A 147 CB - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 LYS A 147 CA - CB - CG ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG A 267 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 12 -70.37 -99.31 REMARK 500 ALA A 13 -38.06 174.19 REMARK 500 PHE A 59 1.88 -58.74 REMARK 500 PRO A 67 44.29 -88.10 REMARK 500 VAL A 100 -76.54 -120.75 REMARK 500 SER A 130 -34.23 90.91 REMARK 500 PHE A 135 -176.58 -171.10 REMARK 500 ASP A 141 -147.47 -139.68 REMARK 500 PRO A 143 -4.05 -56.74 REMARK 500 LYS A 164 0.40 84.86 REMARK 500 ASN A 176 -11.66 96.59 REMARK 500 HIS A 199 -5.76 76.36 REMARK 500 LEU A 200 8.92 -64.98 REMARK 500 ASN A 205 105.47 -27.40 REMARK 500 ARG A 223 60.65 -118.12 REMARK 500 LEU A 230 120.85 -176.67 REMARK 500 PRO A 231 156.95 -47.48 REMARK 500 SER A 254 -167.60 -162.43 REMARK 500 ALA A 266 39.86 -157.71 REMARK 500 LYS A 273 -45.53 89.67 REMARK 500 ALA A 275 84.88 -155.78 REMARK 500 ASP A 286 -70.01 -119.45 REMARK 500 THR A 287 -71.37 -48.89 REMARK 500 LYS A 306 -58.40 -132.86 REMARK 500 PHE A 313 64.04 -116.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 12 14.4 L L OUTSIDE RANGE REMARK 500 GLU A 14 46.4 L L OUTSIDE RANGE REMARK 500 LYS A 147 14.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 170 ND1 REMARK 620 2 HOH A 503 O 125.1 REMARK 620 3 HIS A 199 NE2 87.8 126.6 REMARK 620 4 KCX A 137 OQ1 96.7 86.4 135.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 137 OQ2 REMARK 620 2 HIS A 22 NE2 97.7 REMARK 620 3 HIS A 24 NE2 90.5 100.2 REMARK 620 4 HOH A 503 O 76.9 118.3 140.6 REMARK 620 5 ASP A 256 OD1 175.6 84.2 93.1 98.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VC5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HYPERTHERMOPHILIC SULFOLOBUS REMARK 900 SOLFATARICUS PLL SSOPOX (APO) REMARK 900 RELATED ID: 2VC7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HYPERTHERMOPHILIC SULFOLOBUS REMARK 900 SOLFATARICUS PLL SSOPOX (BOUND TO C10HTL) REMARK 900 RELATED ID: 3UF9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HYPERTHERMOPHILIC SULFOLOBUS REMARK 900 SOLFATARICUS PLL SSOPOX (BOUND TO FENSULFOTHION) DBREF 4G2D A 1 314 UNP C4KKZ9 C4KKZ9_SULIK 1 314 SEQADV 4G2D GLY A 0 UNP C4KKZ9 EXPRESSION TAG SEQRES 1 A 315 GLY MET ARG ILE PRO LEU VAL GLY LYS GLU PRO ILE GLU SEQRES 2 A 315 ALA GLU ASP MET GLY PHE THR LEU ILE HIS GLU HIS LEU SEQRES 3 A 315 ARG VAL PHE SER GLU ALA VAL ARG TYR GLN TRP PRO HIS SEQRES 4 A 315 LEU TYR ASN GLU ASP GLU GLU LEU ARG ASN ALA VAL ASN SEQRES 5 A 315 GLU VAL LYS ARG ALA MET GLN PHE GLY VAL LYS THR ILE SEQRES 6 A 315 VAL ASP PRO THR VAL MET GLY LEU GLY ARG ASP ILE ARG SEQRES 7 A 315 PHE MET GLU LYS VAL VAL LYS THR THR GLY ILE ASN LEU SEQRES 8 A 315 VAL ALA GLY THR GLY ILE TYR ILE TYR VAL ASP LEU PRO SEQRES 9 A 315 PHE TYR PHE LEU ASN ARG SER ILE ASP GLU ILE ALA ASP SEQRES 10 A 315 LEU PHE ILE HIS ASP ILE LYS GLU GLY ILE GLN ALA THR SEQRES 11 A 315 SER ASN LYS ALA GLY PHE VAL KCX ILE ALA ALA ASP GLU SEQRES 12 A 315 PRO GLY ILE THR LYS ASP VAL GLU LYS VAL ILE ARG ALA SEQRES 13 A 315 ALA ALA ILE THR HIS LYS GLU ALA LYS VAL PRO ILE ILE SEQRES 14 A 315 THR HIS SER ASN ALA HIS ASN ASN THR GLY LEU GLU GLU SEQRES 15 A 315 GLN ARG ILE LEU MET GLU GLU GLY VAL ASP PRO GLY LYS SEQRES 16 A 315 ILE LEU ILE GLY HIS LEU GLY ASP THR ASP ASN THR ASP SEQRES 17 A 315 TYR ILE LYS LYS ILE ALA ASP LYS GLY SER PHE ILE GLY SEQRES 18 A 315 LEU ASP ARG TYR GLY LEU ASP LEU PHE LEU PRO VAL ASP SEQRES 19 A 315 LYS ARG ASN GLU THR THR LEU LYS LEU ILE LYS ASP GLY SEQRES 20 A 315 TYR SER ASP ARG ILE MET ILE SER HIS ASP TYR CYS CYS SEQRES 21 A 315 THR ILE ASP TRP GLY THR ALA ARG PRO GLU LEU LYS PRO SEQRES 22 A 315 LYS LEU ALA PRO ARG TRP SER MET ALA LEU ILE PHE GLU SEQRES 23 A 315 ASP THR ILE PRO PHE LEU LYS LYS ASN GLY VAL SER GLU SEQRES 24 A 315 GLU VAL ILE ASP ILE ILE PHE LYS GLU ASN PRO LYS LYS SEQRES 25 A 315 PHE PHE SER MODRES 4G2D KCX A 137 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 137 12 HET CO A 401 1 HET FE2 A 402 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CO COBALT (II) ION HETNAM FE2 FE (II) ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CO CO 2+ FORMUL 3 FE2 FE 2+ FORMUL 4 HOH *3(H2 O) HELIX 1 1 SER A 29 TRP A 36 1 8 HELIX 2 2 PRO A 37 TYR A 40 5 4 HELIX 3 3 ASN A 41 PHE A 59 1 19 HELIX 4 4 ASP A 75 GLY A 87 1 13 HELIX 5 5 PRO A 103 LEU A 107 5 5 HELIX 6 6 SER A 110 GLU A 124 1 15 HELIX 7 7 THR A 146 LYS A 164 1 19 HELIX 8 8 ASN A 176 GLU A 187 1 12 HELIX 9 9 ASP A 191 GLY A 193 5 3 HELIX 10 10 ASN A 205 LYS A 215 1 11 HELIX 11 11 PRO A 231 ASP A 245 1 15 HELIX 12 12 TRP A 263 ARG A 267 5 5 HELIX 13 13 LEU A 270 ALA A 275 1 6 HELIX 14 14 ALA A 281 ASP A 286 1 6 HELIX 15 15 ASP A 286 LYS A 293 1 8 HELIX 16 16 SER A 297 LYS A 306 1 10 HELIX 17 17 LYS A 306 PHE A 313 1 8 SHEET 1 A 3 THR A 19 LEU A 20 0 SHEET 2 A 3 THR A 63 VAL A 65 1 O VAL A 65 N LEU A 20 SHEET 3 A 3 ASN A 89 VAL A 91 1 O ASN A 89 N ILE A 64 SHEET 1 B 6 THR A 94 ILE A 96 0 SHEET 2 B 6 VAL A 136 ALA A 139 1 O KCX A 137 N THR A 94 SHEET 3 B 6 ILE A 167 HIS A 170 1 O HIS A 170 N ILE A 138 SHEET 4 B 6 ILE A 195 GLY A 198 1 O LEU A 196 N THR A 169 SHEET 5 B 6 PHE A 218 LEU A 221 1 O PHE A 218 N ILE A 195 SHEET 6 B 6 ILE A 251 ILE A 253 1 O MET A 252 N LEU A 221 LINK C VAL A 136 N KCX A 137 1555 1555 1.33 LINK C KCX A 137 N ILE A 138 1555 1555 1.33 LINK ND1 HIS A 170 CO CO A 401 1555 1555 1.77 LINK CO CO A 401 O HOH A 503 1555 1555 1.93 LINK NE2 HIS A 199 CO CO A 401 1555 1555 1.98 LINK CO CO A 401 OQ1 KCX A 137 1555 1555 1.69 LINK OQ2 KCX A 137 FE FE2 A 402 1555 1555 1.73 LINK NE2 HIS A 22 FE FE2 A 402 1555 1555 1.94 LINK NE2 HIS A 24 FE FE2 A 402 1555 1555 1.96 LINK FE FE2 A 402 O HOH A 503 1555 1555 1.99 LINK OD1 ASP A 256 FE FE2 A 402 1555 1555 2.30 SITE 1 AC1 5 KCX A 137 HIS A 170 HIS A 199 FE2 A 402 SITE 2 AC1 5 HOH A 503 SITE 1 AC2 6 HIS A 22 HIS A 24 KCX A 137 ASP A 256 SITE 2 AC2 6 CO A 401 HOH A 503 CRYST1 47.810 47.810 239.100 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020916 0.012076 0.000000 0.00000 SCALE2 0.000000 0.024152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004182 0.00000 MASTER 464 0 3 17 9 0 4 6 0 0 0 25 END