HEADER TRANSFERASE 08-JUN-12 4FIG TITLE CATALYTIC DOMAIN OF HUMAN PAK4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: P21-ACTIVATED KINASE 4, PAK-4; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1142, PAK4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RILP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET VECTOR KEYWDS SERINE/THREONINE-PROTEIN KINASE PAK4, KINASE DOMAIN, PROTEIN KINASE, KEYWDS 2 ATP BINDING, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.H.HA,T.J.BOGGON REVDAT 3 31-OCT-12 4FIG 1 JRNL REVDAT 2 26-SEP-12 4FIG 1 JRNL REVDAT 1 12-SEP-12 4FIG 0 JRNL AUTH B.H.HA,M.J.DAVIS,C.CHEN,H.J.LOU,J.GAO,R.ZHANG,M.KRAUTHAMMER, JRNL AUTH 2 R.HALABAN,J.SCHLESSINGER,B.E.TURK,T.J.BOGGON JRNL TITL TYPE II P21-ACTIVATED KINASES (PAKS) ARE REGULATED BY AN JRNL TITL 2 AUTOINHIBITORY PSEUDOSUBSTRATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 16107 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22988085 JRNL DOI 10.1073/PNAS.1214447109 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1962 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.38000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : -2.06000 REMARK 3 B12 (A**2) : 0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.478 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.239 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4802 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6522 ; 1.042 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 584 ; 4.493 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;35.828 ;23.235 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 854 ;15.290 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.093 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 736 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3546 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 398 REMARK 3 RESIDUE RANGE : A 399 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 26.7623 -6.6278 -16.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.1341 T22: 0.2980 REMARK 3 T33: 0.1305 T12: 0.0750 REMARK 3 T13: 0.0045 T23: 0.1365 REMARK 3 L TENSOR REMARK 3 L11: 3.8835 L22: 3.8672 REMARK 3 L33: 1.7434 L12: -2.8915 REMARK 3 L13: 0.5632 L23: 0.0030 REMARK 3 S TENSOR REMARK 3 S11: -0.3727 S12: 0.2124 S13: 0.5219 REMARK 3 S21: 0.3430 S22: 0.0901 S23: -0.2932 REMARK 3 S31: -0.0575 S32: 0.5479 S33: 0.2826 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 298 B 398 REMARK 3 RESIDUE RANGE : B 399 B 590 REMARK 3 ORIGIN FOR THE GROUP (A): 44.1887 -34.3326 13.9757 REMARK 3 T TENSOR REMARK 3 T11: 0.1315 T22: 0.2804 REMARK 3 T33: 0.1425 T12: 0.0604 REMARK 3 T13: -0.0029 T23: -0.1314 REMARK 3 L TENSOR REMARK 3 L11: 3.9291 L22: 4.2897 REMARK 3 L33: 1.7449 L12: -3.1526 REMARK 3 L13: -0.4644 L23: -0.1528 REMARK 3 S TENSOR REMARK 3 S11: -0.3975 S12: 0.2175 S13: -0.5543 REMARK 3 S21: 0.3796 S22: 0.1207 S23: 0.3047 REMARK 3 S31: 0.0266 S32: -0.5154 S33: 0.2768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4FIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-12. REMARK 100 THE RCSB ID CODE IS RCSB072941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : INSERTION DEVICE REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.31700 REMARK 200 R SYM (I) : 0.31700 REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.00000 REMARK 200 R SYM FOR SHELL (I) : 0.00000 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2CDZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 700 MM K/NA TARTRATE, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 246 REMARK 465 GLY A 247 REMARK 465 SER A 248 REMARK 465 SER A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 SER A 256 REMARK 465 SER A 257 REMARK 465 GLY A 258 REMARK 465 LEU A 259 REMARK 465 VAL A 260 REMARK 465 PRO A 261 REMARK 465 ARG A 262 REMARK 465 GLY A 263 REMARK 465 SER A 264 REMARK 465 HIS A 265 REMARK 465 MET A 266 REMARK 465 GLU A 267 REMARK 465 ASN A 268 REMARK 465 LEU A 269 REMARK 465 TYR A 270 REMARK 465 PHE A 271 REMARK 465 GLN A 272 REMARK 465 GLY A 273 REMARK 465 ALA A 274 REMARK 465 ARG A 275 REMARK 465 ALA A 276 REMARK 465 ARG A 277 REMARK 465 GLN A 278 REMARK 465 GLU A 279 REMARK 465 ASN A 280 REMARK 465 GLY A 281 REMARK 465 MET A 282 REMARK 465 PRO A 283 REMARK 465 GLU A 284 REMARK 465 LYS A 285 REMARK 465 PRO A 286 REMARK 465 PRO A 287 REMARK 465 GLY A 288 REMARK 465 PRO A 289 REMARK 465 ARG A 290 REMARK 465 SER A 291 REMARK 465 PRO A 292 REMARK 465 GLN A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 296 REMARK 465 GLN A 297 REMARK 465 ARG A 591 REMARK 465 MET B 246 REMARK 465 GLY B 247 REMARK 465 SER B 248 REMARK 465 SER B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 SER B 256 REMARK 465 SER B 257 REMARK 465 GLY B 258 REMARK 465 LEU B 259 REMARK 465 VAL B 260 REMARK 465 PRO B 261 REMARK 465 ARG B 262 REMARK 465 GLY B 263 REMARK 465 SER B 264 REMARK 465 HIS B 265 REMARK 465 MET B 266 REMARK 465 GLU B 267 REMARK 465 ASN B 268 REMARK 465 LEU B 269 REMARK 465 TYR B 270 REMARK 465 PHE B 271 REMARK 465 GLN B 272 REMARK 465 GLY B 273 REMARK 465 ALA B 274 REMARK 465 ARG B 275 REMARK 465 ALA B 276 REMARK 465 ARG B 277 REMARK 465 GLN B 278 REMARK 465 GLU B 279 REMARK 465 ASN B 280 REMARK 465 GLY B 281 REMARK 465 MET B 282 REMARK 465 PRO B 283 REMARK 465 GLU B 284 REMARK 465 LYS B 285 REMARK 465 PRO B 286 REMARK 465 PRO B 287 REMARK 465 GLY B 288 REMARK 465 PRO B 289 REMARK 465 ARG B 290 REMARK 465 SER B 291 REMARK 465 PRO B 292 REMARK 465 GLN B 293 REMARK 465 ARG B 294 REMARK 465 GLU B 295 REMARK 465 PRO B 296 REMARK 465 GLN B 297 REMARK 465 ARG B 591 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 439 -3.10 72.07 REMARK 500 VAL B 367 -60.82 -96.07 REMARK 500 HIS B 409 -60.24 -104.01 REMARK 500 ARG B 439 -4.05 73.21 REMARK 500 ASP B 440 49.63 -140.88 REMARK 500 SER B 457 -40.27 -136.10 REMARK 500 PRO B 479 -51.11 -29.23 REMARK 500 ARG B 589 109.10 -160.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP B 602 O1A REMARK 620 2 ANP B 602 O2B 84.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A1001 O1A REMARK 620 2 ANP A1001 O2B 80.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4FIE RELATED DB: PDB REMARK 900 RELATED ID: 4FIF RELATED DB: PDB REMARK 900 RELATED ID: 4FIH RELATED DB: PDB REMARK 900 RELATED ID: 4FII RELATED DB: PDB REMARK 900 RELATED ID: 4FIJ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE CORRESPONDS TO ISOFORM 2 OF SERINE/THREONINE-PROTEIN REMARK 999 KINASE PAK 4, UNP ACCESSION CODE O96013-2 PAK4_HUMAN DBREF 4FIG A 274 591 UNP O96013 PAK4_HUMAN 1 318 DBREF 4FIG B 274 591 UNP O96013 PAK4_HUMAN 1 318 SEQADV 4FIG MET A 246 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY A 247 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER A 248 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER A 249 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 250 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 251 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 252 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 253 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 254 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 255 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER A 256 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER A 257 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY A 258 UNP O96013 EXPRESSION TAG SEQADV 4FIG LEU A 259 UNP O96013 EXPRESSION TAG SEQADV 4FIG VAL A 260 UNP O96013 EXPRESSION TAG SEQADV 4FIG PRO A 261 UNP O96013 EXPRESSION TAG SEQADV 4FIG ARG A 262 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY A 263 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER A 264 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS A 265 UNP O96013 EXPRESSION TAG SEQADV 4FIG MET A 266 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLU A 267 UNP O96013 EXPRESSION TAG SEQADV 4FIG ASN A 268 UNP O96013 EXPRESSION TAG SEQADV 4FIG LEU A 269 UNP O96013 EXPRESSION TAG SEQADV 4FIG TYR A 270 UNP O96013 EXPRESSION TAG SEQADV 4FIG PHE A 271 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLN A 272 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY A 273 UNP O96013 EXPRESSION TAG SEQADV 4FIG MET B 246 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY B 247 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER B 248 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER B 249 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 250 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 251 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 252 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 253 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 254 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 255 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER B 256 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER B 257 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY B 258 UNP O96013 EXPRESSION TAG SEQADV 4FIG LEU B 259 UNP O96013 EXPRESSION TAG SEQADV 4FIG VAL B 260 UNP O96013 EXPRESSION TAG SEQADV 4FIG PRO B 261 UNP O96013 EXPRESSION TAG SEQADV 4FIG ARG B 262 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY B 263 UNP O96013 EXPRESSION TAG SEQADV 4FIG SER B 264 UNP O96013 EXPRESSION TAG SEQADV 4FIG HIS B 265 UNP O96013 EXPRESSION TAG SEQADV 4FIG MET B 266 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLU B 267 UNP O96013 EXPRESSION TAG SEQADV 4FIG ASN B 268 UNP O96013 EXPRESSION TAG SEQADV 4FIG LEU B 269 UNP O96013 EXPRESSION TAG SEQADV 4FIG TYR B 270 UNP O96013 EXPRESSION TAG SEQADV 4FIG PHE B 271 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLN B 272 UNP O96013 EXPRESSION TAG SEQADV 4FIG GLY B 273 UNP O96013 EXPRESSION TAG SEQRES 1 A 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 346 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 A 346 GLN GLY ALA ARG ALA ARG GLN GLU ASN GLY MET PRO GLU SEQRES 4 A 346 LYS PRO PRO GLY PRO ARG SER PRO GLN ARG GLU PRO GLN SEQRES 5 A 346 ARG VAL SER HIS GLU GLN PHE ARG ALA ALA LEU GLN LEU SEQRES 6 A 346 VAL VAL ASP PRO GLY ASP PRO ARG SER TYR LEU ASP ASN SEQRES 7 A 346 PHE ILE LYS ILE GLY GLU GLY SER THR GLY ILE VAL CYS SEQRES 8 A 346 ILE ALA THR VAL ARG SER SER GLY LYS LEU VAL ALA VAL SEQRES 9 A 346 LYS LYS MET ASP LEU ARG LYS GLN GLN ARG ARG GLU LEU SEQRES 10 A 346 LEU PHE ASN GLU VAL VAL ILE MET ARG ASP TYR GLN HIS SEQRES 11 A 346 GLU ASN VAL VAL GLU MET TYR ASN SER TYR LEU VAL GLY SEQRES 12 A 346 ASP GLU LEU TRP VAL VAL MET GLU PHE LEU GLU GLY GLY SEQRES 13 A 346 ALA LEU THR ASP ILE VAL THR HIS THR ARG MET ASN GLU SEQRES 14 A 346 GLU GLN ILE ALA ALA VAL CYS LEU ALA VAL LEU GLN ALA SEQRES 15 A 346 LEU SER VAL LEU HIS ALA GLN GLY VAL ILE HIS ARG ASP SEQRES 16 A 346 ILE LYS SER ASP SER ILE LEU LEU THR HIS ASP GLY ARG SEQRES 17 A 346 VAL LYS LEU SER ASP PHE GLY PHE CYS ALA GLN VAL SER SEQRES 18 A 346 LYS GLU VAL PRO ARG ARG LYS SEP LEU VAL GLY THR PRO SEQRES 19 A 346 TYR TRP MET ALA PRO GLU LEU ILE SER ARG LEU PRO TYR SEQRES 20 A 346 GLY PRO GLU VAL ASP ILE TRP SER LEU GLY ILE MET VAL SEQRES 21 A 346 ILE GLU MET VAL ASP GLY GLU PRO PRO TYR PHE ASN GLU SEQRES 22 A 346 PRO PRO LEU LYS ALA MET LYS MET ILE ARG ASP ASN LEU SEQRES 23 A 346 PRO PRO ARG LEU LYS ASN LEU HIS LYS VAL SER PRO SER SEQRES 24 A 346 LEU LYS GLY PHE LEU ASP ARG LEU LEU VAL ARG ASP PRO SEQRES 25 A 346 ALA GLN ARG ALA THR ALA ALA GLU LEU LEU LYS HIS PRO SEQRES 26 A 346 PHE LEU ALA LYS ALA GLY PRO PRO ALA SER ILE VAL PRO SEQRES 27 A 346 LEU MET ARG GLN ASN ARG THR ARG SEQRES 1 B 346 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 346 LEU VAL PRO ARG GLY SER HIS MET GLU ASN LEU TYR PHE SEQRES 3 B 346 GLN GLY ALA ARG ALA ARG GLN GLU ASN GLY MET PRO GLU SEQRES 4 B 346 LYS PRO PRO GLY PRO ARG SER PRO GLN ARG GLU PRO GLN SEQRES 5 B 346 ARG VAL SER HIS GLU GLN PHE ARG ALA ALA LEU GLN LEU SEQRES 6 B 346 VAL VAL ASP PRO GLY ASP PRO ARG SER TYR LEU ASP ASN SEQRES 7 B 346 PHE ILE LYS ILE GLY GLU GLY SER THR GLY ILE VAL CYS SEQRES 8 B 346 ILE ALA THR VAL ARG SER SER GLY LYS LEU VAL ALA VAL SEQRES 9 B 346 LYS LYS MET ASP LEU ARG LYS GLN GLN ARG ARG GLU LEU SEQRES 10 B 346 LEU PHE ASN GLU VAL VAL ILE MET ARG ASP TYR GLN HIS SEQRES 11 B 346 GLU ASN VAL VAL GLU MET TYR ASN SER TYR LEU VAL GLY SEQRES 12 B 346 ASP GLU LEU TRP VAL VAL MET GLU PHE LEU GLU GLY GLY SEQRES 13 B 346 ALA LEU THR ASP ILE VAL THR HIS THR ARG MET ASN GLU SEQRES 14 B 346 GLU GLN ILE ALA ALA VAL CYS LEU ALA VAL LEU GLN ALA SEQRES 15 B 346 LEU SER VAL LEU HIS ALA GLN GLY VAL ILE HIS ARG ASP SEQRES 16 B 346 ILE LYS SER ASP SER ILE LEU LEU THR HIS ASP GLY ARG SEQRES 17 B 346 VAL LYS LEU SER ASP PHE GLY PHE CYS ALA GLN VAL SER SEQRES 18 B 346 LYS GLU VAL PRO ARG ARG LYS SEP LEU VAL GLY THR PRO SEQRES 19 B 346 TYR TRP MET ALA PRO GLU LEU ILE SER ARG LEU PRO TYR SEQRES 20 B 346 GLY PRO GLU VAL ASP ILE TRP SER LEU GLY ILE MET VAL SEQRES 21 B 346 ILE GLU MET VAL ASP GLY GLU PRO PRO TYR PHE ASN GLU SEQRES 22 B 346 PRO PRO LEU LYS ALA MET LYS MET ILE ARG ASP ASN LEU SEQRES 23 B 346 PRO PRO ARG LEU LYS ASN LEU HIS LYS VAL SER PRO SER SEQRES 24 B 346 LEU LYS GLY PHE LEU ASP ARG LEU LEU VAL ARG ASP PRO SEQRES 25 B 346 ALA GLN ARG ALA THR ALA ALA GLU LEU LEU LYS HIS PRO SEQRES 26 B 346 PHE LEU ALA LYS ALA GLY PRO PRO ALA SER ILE VAL PRO SEQRES 27 B 346 LEU MET ARG GLN ASN ARG THR ARG MODRES 4FIG SEP A 474 SER PHOSPHOSERINE MODRES 4FIG SEP B 474 SER PHOSPHOSERINE HET SEP A 474 10 HET SEP B 474 10 HET ANP A1001 31 HET MG A1002 1 HET MG B 601 1 HET ANP B 602 31 HETNAM SEP PHOSPHOSERINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *19(H2 O) HELIX 1 1 ARG A 298 VAL A 312 1 15 HELIX 2 2 ASP A 316 SER A 319 5 4 HELIX 3 3 ARG A 355 GLN A 357 5 3 HELIX 4 4 ARG A 359 GLU A 361 5 3 HELIX 5 5 LEU A 362 TYR A 373 1 12 HELIX 6 6 LEU A 403 THR A 408 1 6 HELIX 7 7 ASN A 413 GLN A 434 1 22 HELIX 8 8 LYS A 442 ASP A 444 5 3 HELIX 9 9 ASP A 458 CYS A 462 5 5 HELIX 10 10 THR A 478 MET A 482 5 5 HELIX 11 11 ALA A 483 SER A 488 1 6 HELIX 12 12 PRO A 494 GLY A 511 1 18 HELIX 13 13 PRO A 519 ASN A 530 1 12 HELIX 14 14 SER A 542 LEU A 553 1 12 HELIX 15 15 THR A 562 LEU A 567 1 6 HELIX 16 16 LYS A 568 ALA A 575 5 8 HELIX 17 17 PRO A 577 ARG A 589 5 13 HELIX 18 18 VAL B 299 VAL B 312 1 14 HELIX 19 19 ASP B 316 SER B 319 5 4 HELIX 20 20 ARG B 355 GLN B 357 5 3 HELIX 21 21 ARG B 359 GLU B 361 5 3 HELIX 22 22 LEU B 362 TYR B 373 1 12 HELIX 23 23 LEU B 403 THR B 408 1 6 HELIX 24 24 ASN B 413 GLN B 434 1 22 HELIX 25 25 LYS B 442 ASP B 444 5 3 HELIX 26 26 ASP B 458 CYS B 462 5 5 HELIX 27 27 ALA B 483 SER B 488 1 6 HELIX 28 28 PRO B 494 GLY B 511 1 18 HELIX 29 29 PRO B 519 ASN B 530 1 12 HELIX 30 30 SER B 542 LEU B 553 1 12 HELIX 31 31 THR B 562 LEU B 567 1 6 HELIX 32 32 LYS B 568 ALA B 575 5 8 HELIX 33 33 PRO B 577 ARG B 589 5 13 SHEET 1 A 5 LEU A 321 GLU A 329 0 SHEET 2 A 5 ILE A 334 VAL A 340 -1 O VAL A 335 N GLY A 328 SHEET 3 A 5 LEU A 346 ASP A 353 -1 O VAL A 349 N CYS A 336 SHEET 4 A 5 GLU A 390 GLU A 396 -1 O MET A 395 N ALA A 348 SHEET 5 A 5 MET A 381 VAL A 387 -1 N TYR A 385 O TRP A 392 SHEET 1 B 3 GLY A 401 ALA A 402 0 SHEET 2 B 3 ILE A 446 LEU A 448 -1 O LEU A 448 N GLY A 401 SHEET 3 B 3 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 SHEET 1 C 2 VAL A 436 ILE A 437 0 SHEET 2 C 2 ALA A 463 GLN A 464 -1 O ALA A 463 N ILE A 437 SHEET 1 D 5 LEU B 321 GLU B 329 0 SHEET 2 D 5 ILE B 334 VAL B 340 -1 O VAL B 335 N ILE B 327 SHEET 3 D 5 LEU B 346 ASP B 353 -1 O VAL B 349 N CYS B 336 SHEET 4 D 5 GLU B 390 GLU B 396 -1 O MET B 395 N ALA B 348 SHEET 5 D 5 MET B 381 VAL B 387 -1 N TYR B 385 O TRP B 392 SHEET 1 E 3 GLY B 401 ALA B 402 0 SHEET 2 E 3 ILE B 446 LEU B 448 -1 O LEU B 448 N GLY B 401 SHEET 3 E 3 VAL B 454 LEU B 456 -1 O LYS B 455 N LEU B 447 SHEET 1 F 2 VAL B 436 ILE B 437 0 SHEET 2 F 2 ALA B 463 GLN B 464 -1 O ALA B 463 N ILE B 437 LINK C LYS A 473 N SEP A 474 1555 1555 1.33 LINK C SEP A 474 N LEU A 475 1555 1555 1.33 LINK C LYS B 473 N SEP B 474 1555 1555 1.33 LINK C SEP B 474 N LEU B 475 1555 1555 1.33 LINK MG MG B 601 O1A ANP B 602 1555 1555 1.83 LINK O1A ANP A1001 MG MG A1002 1555 1555 2.08 LINK O2B ANP A1001 MG MG A1002 1555 1555 2.45 LINK MG MG B 601 O2B ANP B 602 1555 1555 2.47 SITE 1 AC1 16 GLU A 329 GLY A 330 SER A 331 THR A 332 SITE 2 AC1 16 VAL A 335 LYS A 350 GLU A 366 GLU A 396 SITE 3 AC1 16 PHE A 397 LEU A 398 ASP A 440 LEU A 447 SITE 4 AC1 16 ASP A 458 GLY A 460 PHE A 461 MG A1002 SITE 1 AC2 1 ANP A1001 SITE 1 AC3 1 ANP B 602 SITE 1 AC4 16 GLU B 329 GLY B 330 SER B 331 THR B 332 SITE 2 AC4 16 VAL B 335 LYS B 350 GLU B 366 MET B 395 SITE 3 AC4 16 GLU B 396 LEU B 398 ASP B 440 LEU B 447 SITE 4 AC4 16 ASP B 458 GLY B 460 PHE B 461 MG B 601 CRYST1 141.918 141.918 61.872 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007046 0.004068 0.000000 0.00000 SCALE2 0.000000 0.008136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016162 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -1.000000 0.000164 0.000475 70.95676 1 MTRIX2 2 -0.000164 -1.000000 0.000323 -40.96133 1 MTRIX3 2 0.000475 0.000323 1.000000 -30.94825 1 MASTER 457 0 6 33 20 0 10 12 0 0 0 54 END