HEADER SIGNALING PROTEIN 07-MAY-12 4F2H TITLE STRUCTURE OF THE MINIMAL STE5 VWA DOMAIN SUBJECT TO AUTOINHIBITION BY TITLE 2 THE STE5 PH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN STE5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VWA DOMAIN (UNP RESIDUES 583-787); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: STE5, NUL3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VON WILDEBRAND TYPE A, STE5MS, COACTIVATION OF FUS3, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.M.COYLE,J.G.ZALATAN,W.A.LIM REVDAT 2 19-SEP-12 4F2H 1 JRNL REVDAT 1 22-AUG-12 4F2H 0 JRNL AUTH J.G.ZALATAN,S.M.COYLE,S.RAJAN,S.S.SIDHU,W.A.LIM JRNL TITL CONFORMATIONAL CONTROL OF THE STE5 SCAFFOLD PROTEIN JRNL TITL 2 INSULATES AGAINST MAP KINASE MISACTIVATION. JRNL REF SCIENCE V. 337 1218 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 22878499 JRNL DOI 10.1126/SCIENCE.1220683 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 4395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 220 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6945 - 4.0162 0.89 2107 111 0.1778 0.2434 REMARK 3 2 4.0162 - 3.1920 0.92 2068 109 0.1897 0.2752 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 24.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.820 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.83120 REMARK 3 B22 (A**2) : 4.72620 REMARK 3 B33 (A**2) : 1.10510 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1564 REMARK 3 ANGLE : 1.982 2115 REMARK 3 CHIRALITY : 0.174 249 REMARK 3 PLANARITY : 0.003 262 REMARK 3 DIHEDRAL : 14.983 577 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'A' and (resseq 584:616) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1609 -35.1256 -9.1265 REMARK 3 T TENSOR REMARK 3 T11: -0.4085 T22: -0.1621 REMARK 3 T33: -0.1942 T12: -0.3253 REMARK 3 T13: 0.3095 T23: 0.2353 REMARK 3 L TENSOR REMARK 3 L11: 0.0160 L22: 0.1491 REMARK 3 L33: 0.1009 L12: -0.0548 REMARK 3 L13: 0.0422 L23: -0.1457 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: 0.0151 S13: 0.1211 REMARK 3 S21: -0.0006 S22: -0.1625 S23: -0.1534 REMARK 3 S31: -0.0768 S32: 0.1063 S33: -0.2153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'A' and (resseq 617:626) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9042 -33.9512 -9.6874 REMARK 3 T TENSOR REMARK 3 T11: 0.1865 T22: 0.3608 REMARK 3 T33: 0.3672 T12: -0.1423 REMARK 3 T13: -0.0201 T23: 0.1762 REMARK 3 L TENSOR REMARK 3 L11: 0.0084 L22: 0.0046 REMARK 3 L33: 0.0023 L12: -0.0052 REMARK 3 L13: -0.0037 L23: -0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0208 S13: 0.0099 REMARK 3 S21: 0.0104 S22: -0.0231 S23: 0.0247 REMARK 3 S31: 0.0096 S32: 0.0108 S33: -0.0029 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'A' and (resseq 627:692) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4067 -21.9166 -16.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.0190 T22: 0.0541 REMARK 3 T33: 0.1743 T12: 0.0836 REMARK 3 T13: -0.0604 T23: 0.1742 REMARK 3 L TENSOR REMARK 3 L11: 0.0381 L22: 0.1437 REMARK 3 L33: 0.0869 L12: -0.0292 REMARK 3 L13: 0.0347 L23: -0.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.2322 S12: 0.2135 S13: 0.4567 REMARK 3 S21: -0.0340 S22: 0.1478 S23: 0.1945 REMARK 3 S31: -0.1653 S32: 0.0147 S33: 0.4718 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'A' and (resseq 693:721) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7634 -29.5036 -21.7125 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.1862 REMARK 3 T33: 0.1222 T12: 0.0216 REMARK 3 T13: 0.0110 T23: 0.0710 REMARK 3 L TENSOR REMARK 3 L11: 0.1473 L22: 0.0188 REMARK 3 L33: 0.0699 L12: -0.0538 REMARK 3 L13: -0.0356 L23: 0.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.2989 S13: 0.1415 REMARK 3 S21: -0.1338 S22: -0.0599 S23: 0.0044 REMARK 3 S31: 0.0110 S32: -0.0824 S33: -0.0449 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resseq 722:734) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7360 -29.8845 -23.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.4256 REMARK 3 T33: 0.1067 T12: -0.0008 REMARK 3 T13: 0.0003 T23: 0.2060 REMARK 3 L TENSOR REMARK 3 L11: 0.0405 L22: 0.0251 REMARK 3 L33: 0.0770 L12: -0.0085 REMARK 3 L13: 0.0351 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.0409 S13: -0.0141 REMARK 3 S21: -0.0616 S22: -0.0935 S23: -0.1298 REMARK 3 S31: -0.0224 S32: -0.1020 S33: -0.0742 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resseq 735:774) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2705 -37.4946 -11.2567 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.0157 REMARK 3 T33: 0.0337 T12: 0.0076 REMARK 3 T13: 0.0371 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 0.2149 L22: 0.0543 REMARK 3 L33: 0.0589 L12: -0.0957 REMARK 3 L13: 0.0564 L23: -0.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.1194 S12: -0.0587 S13: 0.1072 REMARK 3 S21: 0.0299 S22: -0.0488 S23: -0.1815 REMARK 3 S31: 0.0302 S32: -0.0738 S33: -0.1276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4F2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-12. REMARK 100 THE RCSB ID CODE IS RCSB072371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-11; 05-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; N REMARK 200 RADIATION SOURCE : ROTATING ANODE; ROTATING ANODE REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU; RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4395 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 5.750 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.91 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.23600 REMARK 200 <I/SIGMA(I)> FOR SHELL : 10.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FZE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.1 M CALCIUM CHLORIDE, REMARK 280 25 MM TRIS, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.92000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.05000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.92000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.05000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.92000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.67500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.05000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.92000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.67500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.05000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -87.35000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -87.35000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -87.35000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 581 REMARK 465 SER A 582 REMARK 465 GLN A 583 REMARK 465 PHE A 775 REMARK 465 ASP A 776 REMARK 465 GLU A 777 REMARK 465 HIS A 778 REMARK 465 ASP A 779 REMARK 465 ASP A 780 REMARK 465 ASP A 781 REMARK 465 ASP A 782 REMARK 465 GLU A 783 REMARK 465 GLU A 784 REMARK 465 ASP A 785 REMARK 465 ASN A 786 REMARK 465 ASP A 787 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 680 O HIS A 698 8444 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 622 CB - CA - C ANGL. DEV. = 21.3 DEGREES REMARK 500 GLU A 623 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 ILE A 686 CB - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 ASN A 696 CB - CA - C ANGL. DEV. = 24.0 DEGREES REMARK 500 ILE A 697 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 GLY A 729 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 606 78.66 52.94 REMARK 500 ASP A 625 10.92 -66.20 REMARK 500 ASN A 653 33.03 77.89 REMARK 500 SER A 676 43.90 -103.70 REMARK 500 SER A 679 146.81 -173.89 REMARK 500 ASN A 696 -159.36 107.10 REMARK 500 MET A 711 30.00 -89.02 REMARK 500 CYS A 724 4.60 -57.23 REMARK 500 GLU A 753 53.79 77.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 729 ARG A 730 147.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 622 13.6 L L OUTSIDE RANGE REMARK 500 GLU A 623 48.9 L L OUTSIDE RANGE REMARK 500 ASN A 696 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 4F2H A 583 787 UNP P32917 STE5_YEAST 583 787 SEQADV 4F2H GLY A 581 UNP P32917 EXPRESSION TAG SEQADV 4F2H SER A 582 UNP P32917 EXPRESSION TAG SEQRES 1 A 207 GLY SER GLN SER THR VAL ASP SER ILE GLN SER VAL LEU SEQRES 2 A 207 THR THR ILE SER SER ILE LEU SER LEU LYS ARG GLU LYS SEQRES 3 A 207 PRO ASP ASN LEU ALA ILE ILE LEU GLN ILE ASP PHE THR SEQRES 4 A 207 LYS LEU LYS GLU GLU ASP SER LEU ILE VAL VAL TYR ASN SEQRES 5 A 207 SER LEU LYS ALA LEU THR ILE LYS PHE ALA ARG LEU GLN SEQRES 6 A 207 PHE CYS PHE VAL ASP ARG ASN ASN TYR VAL LEU ASP TYR SEQRES 7 A 207 GLY SER VAL LEU HIS LYS ILE ASP SER LEU ASP SER ILE SEQRES 8 A 207 SER ASN LEU LYS SER LYS SER SER SER THR GLN PHE SER SEQRES 9 A 207 PRO ILE TRP LEU LYS ASN THR LEU TYR PRO GLU ASN ILE SEQRES 10 A 207 HIS GLU HIS LEU GLY ILE VAL ALA VAL SER ASN SER ASN SEQRES 11 A 207 MET GLU ALA LYS LYS SER ILE LEU PHE GLN ASP TYR ARG SEQRES 12 A 207 CYS PHE THR SER PHE GLY ARG ARG ARG PRO ASN GLU LEU SEQRES 13 A 207 LYS ILE LYS VAL GLY TYR LEU ASN VAL ASP TYR SER ASP SEQRES 14 A 207 LYS ILE ASP GLU LEU VAL GLU ALA SER SER TRP THR PHE SEQRES 15 A 207 VAL LEU GLU THR LEU CYS TYR SER PHE GLY LEU SER PHE SEQRES 16 A 207 ASP GLU HIS ASP ASP ASP ASP GLU GLU ASP ASN ASP HELIX 1 1 SER A 584 GLU A 605 1 22 HELIX 2 2 SER A 626 THR A 638 1 13 HELIX 3 3 VAL A 661 ILE A 665 1 5 HELIX 4 4 LEU A 668 LEU A 674 1 7 HELIX 5 5 LYS A 675 LYS A 677 5 3 HELIX 6 6 SER A 684 TYR A 693 1 10 HELIX 7 7 ASP A 721 THR A 726 5 6 HELIX 8 8 SER A 759 SER A 770 1 12 SHEET 1 A 6 VAL A 655 SER A 660 0 SHEET 2 A 6 GLN A 645 ASP A 650 -1 N PHE A 648 O LEU A 656 SHEET 3 A 6 ASN A 609 ILE A 616 1 N LEU A 614 O CYS A 647 SHEET 4 A 6 LEU A 701 SER A 707 1 O VAL A 706 N GLN A 615 SHEET 5 A 6 GLU A 735 VAL A 740 1 O LEU A 736 N ILE A 703 SHEET 6 A 6 LEU A 754 ALA A 757 1 O VAL A 755 N LYS A 739 CRYST1 63.840 87.350 100.100 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015664 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009990 0.00000 MASTER 444 0 0 8 6 0 0 6 0 0 0 16 END